Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCAAAGAAAGCTCTCGTGAAGGTTACAACATCAAACGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCCTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAACAGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAACCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGGAAAGTTGTCGTGCATGAGGACCAACTGCAACACTCTGCATCAGTTGCCTCTTTGTCTGTCCAACAACTGCAGGACATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCTCTCCTCTCATGGGTTTTCGCCGCCATCGTAGTCGAAGTCGAACGCCGCCGTCGTTTTCGTTCGACCTCTCCTCGTGGGTTTTCGTCGTCGTCGTAG
mRNA sequence
ATGGCACCAAAGAAAGCTCTCGTGAAGGTTACAACATCAAACGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCCTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAACAGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAACCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGGAAAGTTGTCGTGCATGAGGACCAACTGCAACACTCTGCATCAGTTGCCTCTTTGTCTGTCCAACAACTGCAGGACATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCTCTCCTCTCATGGGTTTTCGCCGCCATCGTAGTCGAAGTCGAACGCCGCCGTCGTTTTCGTTCGACCTCTCCTCGTGGGTTTTCGTCGTCGTCGTAG
Coding sequence (CDS)
ATGGCACCAAAGAAAGCTCTCGTGAAGGTTACAACATCAAACGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCCTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAACAGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAACCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGGAAAGTTGTCGTGCATGAGGACCAACTGCAACACTCTGCATCAGTTGCCTCTTTGTCTGTCCAACAACTGCAGGACATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCTCTCCTCTCATGGGTTTTCGCCGCCATCGTAGTCGAAGTCGAACGCCGCCGTCGTTTTCGTTCGACCTCTCCTCGTGGGTTTTCGTCGTCGTCGTAG
Protein sequence
MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPAAGKNDKGKVVVHEDQLQHSASVASLSVQQLQDMIMNSIRAQYGGPLLSWVFAAIVVEVERRRRFRSTSPRGFSSSS
Homology
BLAST of Lag0014737 vs. NCBI nr
Match:
XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])
HSP 1 Score: 184.9 bits (468), Expect = 7.3e-43
Identity = 111/183 (60.66%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA K + ++D+YTGPITRSRS+GI I+ A+A I K + ES K + +K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+ S +S +PDVMSVMMAD+ + MAEMERK+NLLMK VDERD EIA L
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
K Q+Q RETAESSQTP +DKGK VV E+Q Q S SVASLSVQQLQDMI NSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 184.9 bits (468), Expect = 7.3e-43
Identity = 111/183 (60.66%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA K + ++D+YTGPITRSRS+GI I+ A+A I K + ES K + +K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+ S +S +PDVMSVMMAD+ + MAEMERK+NLLMK VDERD EIA L
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
K Q+Q RETAESSQTP +DKGK VV E+Q Q S SVASLSVQQLQDMI NSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 183.0 bits (463), Expect = 2.8e-42
Identity = 110/183 (60.11%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA K + ++D+YTGPITRSRS+GI I+ A+A I K + ES K + +K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+ S +S +PDVMSVMMAD+ + MAEMERK+NLLMK VDERD EIA L
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
K Q+Q RETAESSQTP +DKGK VV E+Q Q S SVASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. NCBI nr
Match:
XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])
HSP 1 Score: 183.0 bits (463), Expect = 2.8e-42
Identity = 110/183 (60.11%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA K + ++D+YTGPITRSRS+GI I+ A+A I K + ES K + +K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+ S +S +PDVMSVMMAD+ + MAEMERK+NLLMK VDERD EIA L
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
K Q+Q RETAESSQTP +DKGK VV E+Q Q S SVASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. NCBI nr
Match:
XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])
HSP 1 Score: 183.0 bits (463), Expect = 2.8e-42
Identity = 110/183 (60.11%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA K + ++D+YTGPITRSRS+GI I+ A+A I K + ES K + +K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+ S +S +PDVMSVMMAD+ + MAEMERK+NLLMK VDERD EIA L
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
K Q+Q RETAESSQTP +DKGK VV E+Q Q S SVASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 4.3e-41
Identity = 107/183 (58.47%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA + ++++YTGPITRSRS+GI +D VA I K + ES K + +K+
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQ-GSNVAQSILKQLMESLKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+++ +S +SK +PDVMSVMMADI + MAEMERK+N LMKAV+ERD EI L
Sbjct: 61 NPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
+ Q++ RETAESSQTP DKGK VV E+Q Q S SVASLSVQQLQDMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPIVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. ExPASy TrEMBL
Match:
A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 104/182 (57.14%), Postives = 125/182 (68.68%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KK ++D+YTGPITRSRS+GI I+E V I K + ES K + +K
Sbjct: 1 MASKKVASNSYVASDAYTGPITRSRSKGI-IQEQDQDSNVVQSILKQLMESPKAGIVIKK 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+++ S SK +PDVMSVMMADI + MAEME+K+N LMKAV+ERD EI L
Sbjct: 61 NPLYDNSDLASSMSKKKAHPDVMSVMMADITVEAAMAEMEKKINFLMKAVEERDHEITAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
+ Q++ RETAESSQTP DKGK VV E+Q Q S SVASLS+QQLQDMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPVVKATDKGKNVVQENQPQQQSISVASLSIQQLQDMIANSIRAQY 180
Query: 181 GG 182
GG
Sbjct: 181 GG 181
BLAST of Lag0014737 vs. ExPASy TrEMBL
Match:
A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 103/183 (56.28%), Postives = 127/183 (69.40%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA + ++D+YTGPITRSRS+GI +D VA RI K + ES K + +K+
Sbjct: 1 MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQ-GSNVAQRILKQLIESPKAGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
N L+++ S +SK +PDV SVMMADI + M EMERK+N LMKAV+ERD EI
Sbjct: 61 NSLYDNSDSASNKSKKEAHPDVKSVMMADIMTEAAMTEMERKINFLMKAVEERDHEITAF 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
+ Q++ RETAESSQTP DKGK V+ E+Q Q S SVASLSVQQLQDMI NSI+AQY
Sbjct: 121 REQIRTRETAESSQTPVVKATDKGKNVLQENQPQQQSVSVASLSVQQLQDMIANSIKAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
BLAST of Lag0014737 vs. ExPASy TrEMBL
Match:
A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 100/183 (54.64%), Postives = 123/183 (67.21%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KKA + + ++D YTGPITR+RS+GI +D V I K + ES K + +K+
Sbjct: 29 MASKKAASRSSVASDGYTGPITRNRSKGITQEQDQGSD-VPQSILKQLMESPKAVIVIKE 88
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
N L+++ S +SK +PDVMSVMM DI + MAEMERK+N LMK V+ERD EI L
Sbjct: 89 NSLYDNSDSASSKSKKKEHPDVMSVMMTDITAEAVMAEMERKINFLMKVVEERDHEITAL 148
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
+ Q+Q RET ESSQT DKGK VV E+Q Q S SVASLSVQQLQ+MI NS RAQY
Sbjct: 149 REQMQTRETVESSQTSVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQNMITNSNRAQY 208
Query: 181 GGP 183
GGP
Sbjct: 209 GGP 210
BLAST of Lag0014737 vs. ExPASy TrEMBL
Match:
A0A5D3CD35 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00070 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 4.2e-36
Identity = 97/183 (53.01%), Postives = 125/183 (68.31%), Query Frame = 0
Query: 1 MAPKKALVKVTTSNDSYTGPITRSRSQGIEIREDHTPPAVASRISKLIEESSKDRVAVKD 60
MA KK + ++D+YTGPIT S S+GI +D VA I K + ES K + +K+
Sbjct: 1 MASKKTASNSSVASDAYTGPITLSHSKGITQEQDQ-GSNVAQSILKQLMESPKVGIVIKE 60
Query: 61 NPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAVDERDLEIAYL 120
NPL+++ S +SK +PDVM VMMADI + MA+ME+K+N LMKA++E D EI L
Sbjct: 61 NPLYDNFDYASSKSKKEAHPDVMFVMMADITAEAAMAKMEKKINFLMKAMEEGDHEITAL 120
Query: 121 KNQLQNRETAESSQTPAAGKNDKGKVVVHEDQ-LQHSASVASLSVQQLQDMIMNSIRAQY 180
+ Q++ RETAESSQTP DKGK VV ++Q Q S S+ASLSVQ+LQDMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPVVKATDKGKNVVQKNQPQQQSVSIASLSVQRLQDMIANSIRAQY 180
Query: 181 GGP 183
GGP
Sbjct: 181 GGP 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BY54 | 4.3e-41 | 58.47 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7UF60 | 5.3e-39 | 57.14 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TFN2 | 5.3e-39 | 56.28 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7VCU1 | 1.9e-36 | 54.64 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3CD35 | 4.2e-36 | 53.01 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |