Lag0014711 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014711
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	serine/threonine-protein phosphatase 6 regulatory subunit 2
Location	chr12: 3836273 .. 3836966 (+)
RNA-Seq Expression	Lag0014711
Synteny	Lag0014711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTGTTGCGGAAGTCAATTCCTTTTTTGCAATATGTTCAAGCGCATCAAGTAATTATAAGAAGCTAGTTGATCTGATAGAAATTACTTCCATCATGGAGGTTTTGATAAGGTTTCTGGGTGCTGATAAGCATCTGTATTCAAGCTTTTCAGAATCAATAAAGTGGATTGTAGAGTCTGTCGTTCTGGAGTTAATAGTGGTCAAGTTCAGCTCTTCAGATTGTTCAAAAGTTCATTCTTATGCCGCAAGAACACTTTGTGCTTTTACTCGATTTGCTCCTCCTGGTCTTTTGGCTATAATTTCCAGCCAAGTTTTGTAGGAAGAATGTTTCGCCATGCCTCGGAAGATTCACGACCAACATATGTTTTAATTATCTCGTTATCAAAGTGTATATCTTTGTTAGATCCTAGGAGGATAACTACTGGAACAGCTTTTGTATACACCCGTCAAATATCCCATGGATCTTCTACTTCAGCATCTATGGCGACAGTGGAAGGCATGTTGGTGACTCTGGGTTGGTTGCTCAGGCTTCTGGATGTTTCTTCATCAGAGAAAGTTTTAGTTACAACATTCAGATAGTTTCAGACACCTCAAAGCTTCGTCATGGAGTTCGTTGTCCAAAGCTTTATTCAGCCTTCTTTATTCAGATCTTTTACCTTAATTGGGATGCTTTCATTTCTCCATCCTAA

mRNA sequence

ATGCTTGTTGTTGCGGAAGTCAATTCCTTTTTTGCAATATGTTCAAGCGCATCAAGTAATTATAAGAAGCTAGTTGATCTGATAGAAATTACTTCCATCATGGAGGTTTTGATAAGGTTTCTGGGTGCTGATAAGCATCTGTATTCAAGCTTTTCAGAATCAATAAAGTGGATTGTAGAGTCTGTCGTTCTGGAGTTAATAGTGGTCAAGTTCAGCTCTTCAGATTGTTCAAAAGTTCATTCTTATGCCGCAAGAACACTTTGTGCTTTTACTCGATTTGCTCCTCCTGGTCTTTTGGCTATAATTTCCAGCCAAGAGGATAACTACTGGAACAGCTTTTGTATACACCCGTCAAATATCCCATGGATCTTCTACTTCAGCATCTATGGCGACAGTGGAAGGCATGTTGGTGACTCTGGGTTGGTTGCTCAGGCTTCTGGATGTTTCTTCATCAGAGAAAGTTTTAGTTACAACATTCAGATAGTTTCAGACACCTCAAAGCTTCGTCATGGAGTTCGTTGTCCAAAGCTTTATTCAGCCTTCTTTATTCAGATCTTTTACCTTAATTGGGATGCTTTCATTTCTCCATCCTAA

Coding sequence (CDS)

ATGCTTGTTGTTGCGGAAGTCAATTCCTTTTTTGCAATATGTTCAAGCGCATCAAGTAATTATAAGAAGCTAGTTGATCTGATAGAAATTACTTCCATCATGGAGGTTTTGATAAGGTTTCTGGGTGCTGATAAGCATCTGTATTCAAGCTTTTCAGAATCAATAAAGTGGATTGTAGAGTCTGTCGTTCTGGAGTTAATAGTGGTCAAGTTCAGCTCTTCAGATTGTTCAAAAGTTCATTCTTATGCCGCAAGAACACTTTGTGCTTTTACTCGATTTGCTCCTCCTGGTCTTTTGGCTATAATTTCCAGCCAAGAGGATAACTACTGGAACAGCTTTTGTATACACCCGTCAAATATCCCATGGATCTTCTACTTCAGCATCTATGGCGACAGTGGAAGGCATGTTGGTGACTCTGGGTTGGTTGCTCAGGCTTCTGGATGTTTCTTCATCAGAGAAAGTTTTAGTTACAACATTCAGATAGTTTCAGACACCTCAAAGCTTCGTCATGGAGTTCGTTGTCCAAAGCTTTATTCAGCCTTCTTTATTCAGATCTTTTACCTTAATTGGGATGCTTTCATTTCTCCATCCTAA

Protein sequence

MLVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISSQEDNYWNSFCIHPSNIPWIFYFSIYGDSGRHVGDSGLVAQASGCFFIRESFSYNIQIVSDTSKLRHGVRCPKLYSAFFIQIFYLNWDAFISPS

Homology

[Close]

BLAST of Lag0014711 vs. NCBI nr
Match: XP_008439556.1 (PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis melo] >XP_016899299.1 PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-26
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 22  KKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHS 81
           KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+ VLE+IV KFSSSDCS+VHS
Sbjct: 152 KKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEETDVLEMIVDKFSSSDCSEVHS 211

Query: 82  YAARTLCAFTRFAPPGLLAIISS 105
            AA TLCA TRFAPPGLLA ISS
Sbjct: 212 NAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. NCBI nr
Match: XP_022146511.1 (serine/threonine-protein phosphatase 6 regulatory subunit 2 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-26
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   LVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVES 61
           L++ +   F     +  +  KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+
Sbjct: 132 LLLRKTIPFMQYVQAHQAIVKKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEET 191

Query: 62  VVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISS 105
            VLE+IV KFSSSDCS+VHS AA TLCA TRFAPPGLLA ISS
Sbjct: 192 DVLEMIVDKFSSSDCSEVHSNAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. NCBI nr
Match: XP_038881900.1 (serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-26
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   LVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVES 61
           L++ +   F     +  +  KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+
Sbjct: 132 LLLRKTVPFMQYVQAHQAIVKKLVDLIGITSIMEVLIRLLGADEHLYSSYAESMKWIEET 191

Query: 62  VVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISS 105
            VLE+IV KFSSSDCS+VHS AA TLCA TRFAPPGLLA ISS
Sbjct: 192 DVLEMIVDKFSSSDCSEVHSNAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. NCBI nr
Match: XP_038881899.1 (serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-26
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   LVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVES 61
           L++ +   F     +  +  KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+
Sbjct: 132 LLLRKTVPFMQYVQAHQAIVKKLVDLIGITSIMEVLIRLLGADEHLYSSYAESMKWIEET 191

Query: 62  VVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISS 105
            VLE+IV KFSSSDCS+VHS AA TLCA TRFAPPGLLA ISS
Sbjct: 192 DVLEMIVDKFSSSDCSEVHSNAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. NCBI nr
Match: XP_004134561.1 (serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis sativus] >XP_011658318.1 serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis sativus] >KGN49455.1 hypothetical protein Csa_003849 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 9.8e-26
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 22  KKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHS 81
           KKLVDLI ITSIMEVLIR LGAD+HLYSS+++S+KWI E+ VLE+IV KFSSSDCS+VHS
Sbjct: 152 KKLVDLIGITSIMEVLIRLLGADEHLYSSYTDSMKWIEETDVLEMIVDKFSSSDCSEVHS 211

Query: 82  YAARTLCAFTRFAPPGLLAIISS 105
            AA TLCA TRFAPPGLLA ISS
Sbjct: 212 NAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. ExPASy TrEMBL
Match: A0A1S4DTI2 (serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Cucumis melo OX=3656 GN=LOC103484319 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 22  KKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHS 81
           KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+ VLE+IV KFSSSDCS+VHS
Sbjct: 152 KKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEETDVLEMIVDKFSSSDCSEVHS 211

Query: 82  YAARTLCAFTRFAPPGLLAIISS 105
            AA TLCA TRFAPPGLLA ISS
Sbjct: 212 NAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. ExPASy TrEMBL
Match: A0A6J1CZK7 (serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Momordica charantia OX=3673 GN=LOC111015714 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-26
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   LVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVES 61
           L++ +   F     +  +  KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+
Sbjct: 132 LLLRKTIPFMQYVQAHQAIVKKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEET 191

Query: 62  VVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISS 105
            VLE+IV KFSSSDCS+VHS AA TLCA TRFAPPGLLA ISS
Sbjct: 192 DVLEMIVDKFSSSDCSEVHSNAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. ExPASy TrEMBL
Match: A0A5D3CT01 (Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009530 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-26
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 22  KKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHS 81
           KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+ VLE+IV +FSSSDCS+VHS
Sbjct: 161 KKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEETDVLEMIVDRFSSSDCSEVHS 220

Query: 82  YAARTLCAFTRFAPPGLLAIISS 105
            AA TLCA TRFAPPGLLA ISS
Sbjct: 221 NAAETLCAITRFAPPGLLAKISS 243

[Close]

BLAST of Lag0014711 vs. ExPASy TrEMBL
Match: A0A0A0KI97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525410 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-26
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 22  KKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVESVVLELIVVKFSSSDCSKVHS 81
           KKLVDLI ITSIMEVLIR LGAD+HLYSS+++S+KWI E+ VLE+IV KFSSSDCS+VHS
Sbjct: 152 KKLVDLIGITSIMEVLIRLLGADEHLYSSYTDSMKWIEETDVLEMIVDKFSSSDCSEVHS 211

Query: 82  YAARTLCAFTRFAPPGLLAIISS 105
            AA TLCA TRFAPPGLLA ISS
Sbjct: 212 NAAETLCAITRFAPPGLLAKISS 234

[Close]

BLAST of Lag0014711 vs. ExPASy TrEMBL
Match: A0A6J1IIS2 (serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477833 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 2   LVVAEVNSFFAICSSASSNYKKLVDLIEITSIMEVLIRFLGADKHLYSSFSESIKWIVES 61
           L++ +  SF     +  +  KKLVDLI ITSIMEVLIR LGAD+HLYSS++ES+KWI E+
Sbjct: 132 LLLRKTISFMQYVQAHQAIVKKLVDLIGITSIMEVLIRLLGADEHLYSSYTESMKWIEET 191

Query: 62  VVLELIVVKFSSSDCSKVHSYAARTLCAFTRFAPPGLLAIISS 105
            VLE+IV KFSSSD S+VHS AA TLCA TRFAPPGLLA ISS
Sbjct: 192 DVLEMIVEKFSSSDSSEVHSNAAETLCAVTRFAPPGLLAKISS 234

The following BLAST results are available for this feature:

BLAST of Lag0014711 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439556.1	4.4e-26	80.72	PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis ...	[more]
XP_022146511.1	7.5e-26	66.99	serine/threonine-protein phosphatase 6 regulatory subunit 2 [Momordica charantia...	[more]
XP_038881900.1	7.5e-26	66.99	serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X2 [Benincas...	[more]
XP_038881899.1	7.5e-26	66.99	serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 [Benincas...	[more]
XP_004134561.1	9.8e-26	79.52	serine/threonine-protein phosphatase 6 regulatory subunit 2 [Cucumis sativus] >X...	[more]

BLAST of Lag0014711 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0014711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTI2	2.1e-26	80.72	serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Cucumis melo OX=3...	[more]
A0A6J1CZK7	3.6e-26	66.99	serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Momordica charant...	[more]
A0A5D3CT01	4.8e-26	79.52	Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Cucumis melo var....	[more]
A0A0A0KI97	4.8e-26	79.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525410 PE=3 SV=1	[more]
A0A6J1IIS2	1.4e-25	66.99	serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 OS=Cucurb...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007587	SIT4 phosphatase-associated protein family	PANTHER	PTHR12634	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	coord: 22..105
None	No IPR available	PANTHER	PTHR12634:SF20	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN	coord: 22..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014711.1	Lag0014711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043666	regulation of phosphoprotein phosphatase activity
molecular_function	GO:0019903	protein phosphatase binding
molecular_function	GO:0019888	protein phosphatase regulator activity