Lag0014704 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014704
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	elastin-like
Location	chr12: 3723399 .. 3725696 (+)
RNA-Seq Expression	Lag0014704
Synteny	Lag0014704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGGATATAGTTTTCAGGTGGAGGATTAGTGTTGGGCACCTGGTTGGCGAGTCTTTGGCTCCGATTGATGATGAATGCGGGTTGAAACTAGGTTGTCCTCTTAGCGTGTGGTGGTTTTTTTGGTTTTGCTATTTCAATCCTTATGTAATTTCTCTAATGCGGTCTTCTTGATTGTGAATGAAAGAAGGTTAGGATGTTGATAAAAAAGAAAAAAAAAAAAAGAAGAAGATTTTACTTTATTTTGGTATTTAAATTTTCTAAATTTACTATTTAGATTATGTTTGATAACCATTTAATTTTTTGGTTATTTGTTTTTGAAAATTAAATTTGTTTTCTCACAATTTTTTTATCATGGTATTCATCTTTATTAAAGAAATATTTGAATAGTTAAATAAATATTGCACAAATAATGAATTTTGCTTTCATTCAATATTTACAAAAGTACAAACTGTAAGGGCACAAGCTTGAAGAGATCTTCTGTTAATTTTTTTTATTTTATTTTATTTATTTTAAGCTCAACAATATTTGAAGGGATTCCATTATTTGTACTCTGGAACCGGTAGATTCTCATCCTTAACAACTATAAATAGTTCAACAAAATGAAAAATCAATAAAGCTGAGACAATATGCTATCAGGTTTTTTTTTAATAACATAAGAGGATGGAGAGATTCGAACCACAGACATGTTGGTCATCAATACAAGTTTTATGTCAGTTGAGTTATGCTCATGTTGGCTACAAACATATAATTACTAGAATCCAATTTTGTTAATATTAGTGTATTTACATTGGACAAAAGAAAAATCGGTGAATGAAATATCCATGTGTTTAACATTGGCAACAATGAAGTAGCAAGGTGTGAGAATCAATAAATAAGGTTGCAAACCTTTTTTCTAAGGACTTTAAAGATTGGTTCGAGTATTTAGGTTTGTATTCCCTACTTATTCTCAACACAAGTGATCAAATGATATGCATGTCTCAAAGTTCTAATACACCGATCAGAATTAAAAGTTTTTTTTTTTTTTTTTTTTGGCCAACAAGAGCATAGTTCGACTAGCATAAACCTCGTACTCTCAATCAAGAGATTGAAAGGTTTAAATCCCCCACCCTACATATTGTCAAAAAAAAAAAAAAAAATTCTAAAAGATTTTAAAAAATAAACTATGTTTTCATTCCTGGTATACAATGAGAACTAAAGAAATTATACAAAATTTATAAAATACACAAAAAAAAAAATCTTAATCTATTAAATGCAACTAATTTATAACAGAATATAATAGAATGTATACATTATAGTGAGAGGAAGAGCTTAGTATTAATTTAAGTATATTGAATATGAAACAATGTTAACTACTAATTAAATTAAAATACAAATTAGAATGATTTACTTTGGTCTTTTTTTACAAATTTGACCATTTGTGCAATTATTTATTGAGCTTTCCAATTACTTAATTTTGGTTCTAAATGAAGTTATATGGTTATTTGTTGGTACAAGTAAAAAAAAAAAAAAAAAGAAAAAAAAGGCCATGGAATAACACTGATTAATATCACTCATACATAACTTTTATTATAAATGTATAGTTTGAGGTTACATATGATATTGTAATAGTTTAGATAGTGAACTCAAAAGAAGCTCCAACATCTAAACTTCCACTATATGAAAATAAAACTTGAATTGAAACCCATACTTTGGAGTCCAAATCACATACATATGTTTATTCTTTGATAATATAAAAGACAAAGTAGTTGATGGAATACTAAGAAGATGAAGAAAAGTGGTAGGTGAAATTTCAAGGAGAAGAGGGTATGGTAGTCATTGAAATATTCAACCCTAGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACTAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGGTGGAGTACGGGAAATAGAAGGAATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGAGATTGGTGGAAAACCAGGAATACTTATGGGTGAAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAATGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAATACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

mRNA sequence

ATGATCGAGGATATAGTTTTCAGGTGGAGGATTAGTGTTGGGCACCTGGTTGGCGAGTCTTTGGCTCCGATTGATGATGAATGCGGGTTGAAACTAGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACTAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGGTGGAGTACGGGAAATAGAAGGAATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGAGATTGGTGGAAAACCAGGAATACTTATGGGTGAAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAATGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAATACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

Coding sequence (CDS)

ATGATCGAGGATATAGTTTTCAGGTGGAGGATTAGTGTTGGGCACCTGGTTGGCGAGTCTTTGGCTCCGATTGATGATGAATGCGGGTTGAAACTAGGAAATCAGGGAAAAGTTGTTGATGGAGTAGAACCACTAATTTGTGGAAAACGATCGAATCCTGGAAAAACAGGAATAGTTATTTGTGGAGAACGAGGGATAGTGATTGTTGGAGTACTTGGAATAGAAGGAGTAGTAATTGGTGGAGTACGGGAAATAGAAGGAATAGTGATAGTGATTGGTGGAGAACCGGGAATAATGATTGGTGGAGTACCAGAGATTGGTGGAAAACCAGGAATACTTATGGGTGAAAGACCAGGGATAGTTCTTGGCGGAAAACCAGGGATAATGATTGTTTTACTAGGAGTAGAAGGAGCAGTGATTGGTGGAATACTGGGAATAGAAGGGGTAGTGATTGGTGGAGTTCCCGGAAGAGTTATTTGTGGAATACTAGGAATAGGAGAGATGGAAATTGGTGGAATAGGAAGAGATGATGTTGGACGACTTTGTTGCAGATAA

Protein sequence

MIEDIVFRWRISVGHLVGESLAPIDDECGLKLGNQGKVVDGVEPLICGKRSNPGKTGIVICGERGIVIVGVLGIEGVVIGGVREIEGIVIVIGGEPGIMIGGVPEIGGKPGILMGERPGIVLGGKPGIMIVLLGVEGAVIGGILGIEGVVIGGVPGRVICGILGIGEMEIGGIGRDDVGRLCCR

Homology

[Close]

BLAST of Lag0014704 vs. NCBI nr
Match: KAG6588808.1 (hypothetical protein SDJN03_17373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 68/175 (38.86%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 14  GHLVGESLAPIDDECGLKLGNQGKVVDGVEPLICGKRSN-PGKTGIV---ICGERGIVIV 73
           G L+G     +  E G   G  G ++ GV   +  +    PG  G +   + G  G V+ 
Sbjct: 9   GTLMGGVPGSVGTEMGGVPGIVGTLMGGVPGSVGTEMGGVPGIVGTLMGGVPGSVGTVMG 68

Query: 74  GVLGIEGVVIGGVREIEGIVIVIGGEPGI---MIGGVP-----EIGGKPGI---LMGERP 133
           GV GI G ++GGV    G   V+GG PGI   ++GGVP     E+GG PGI   LMG  P
Sbjct: 69  GVPGIVGTLMGGVPGSVG--AVMGGVPGIVGTLMGGVPGSVGTEMGGVPGIVGTLMGGVP 128

Query: 134 GIV---LGGKPGIMIVLLGVEGAVIGGILGIEGVVIGGVPGRVICGILGIGEMEI 171
           G V   +GG PGI+  L G          GI G+++GG PGR +  ILG+GE EI
Sbjct: 129 GSVGTEMGGVPGIVGTLTG----------GIMGMMMGGTPGREMI-ILGVGESEI 170

[Close]

BLAST of Lag0014704 vs. NCBI nr
Match: HCM13323.1 (hypothetical protein [Lachnospiraceae bacterium])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 32  LGNQGKVVDGVEPLICGKRSNPGKTGIVICGERGIVIVGVLGIEGVVIGGVREIEGIVIV 91
           LG  G VV G+  ++      PG  G+V+ G  G+V+ G+ G  G  I GV  +  + +V
Sbjct: 47  LGILGVVVPGIPGVVV-----PGMPGVVVLGMLGVVVPGIPGAVGPGIPGVVVLGILGVV 106

Query: 92  IGGEPGIMIGGV--PEIGGKPGILMGERPGIVLGGKPGIMIVLLGVEGAVIGGI-----L 151
           + G PG+++ G+    + G PG+++    G+V+ G PG  +V+LG+ G V+ GI     L
Sbjct: 107 VPGIPGVVVRGILGVVVPGIPGVVVLGICGVVVPGIPG--VVVLGICGVVVPGIPGVVVL 166

Query: 152 GIEGVVIGGVPGRVICGILGI 166
           G+ GVV+ G+PG V+ G+LG+
Sbjct: 167 GMLGVVVPGMPGVVVLGMLGV 180

[Close]

BLAST of Lag0014704 vs. NCBI nr
Match: XP_022927703.1 (elastin-like [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-06
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 33  GNQGKVVDGVEPLICGKRSN--PGKTGIVICGERGIV---IVGVLGIEGVVIGGVREIEG 92
           G+ G V+ GV P I G      PG  G V+ G  GIV   + GV G  G V+GGV  I G
Sbjct: 17  GSVGTVMGGV-PGIVGTLMGGVPGSVGTVMGGVPGIVGTLMGGVSGSVGTVMGGVPGIVG 76

Query: 93  IVI-VIGGEPGIMIGGVPEIGGKPGILMGERP---GIVLGGKPGIMIVLL----GVEGAV 152
            ++  + G  G ++GGVP   G  G LMG  P   G V+GG PGI+ +L+    G  G V
Sbjct: 77  TLMGGVPGSVGTVMGGVP---GTEGTLMGGVPGSVGTVMGGVPGIVGMLMGGVPGSVGTV 136

Query: 153 IGGILGIEGVVIGGVP---GRVICGILGIGEMEIGGI 174
           +GG+ G EG ++GGVP   G V+ G+ GI    +GG+
Sbjct: 137 MGGVPGTEGTLMGGVPGSVGTVMGGVPGIVGTLMGGV 169

[Close]

BLAST of Lag0014704 vs. NCBI nr
Match: WP_206175362.1 (hypothetical protein [Variovorax sp. RKNM96] >QSI33116.1 hypothetical protein GNX71_27535 [Variovorax sp. RKNM96])

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-05
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 0


Query: 14  GHLVGESLAPIDDECGLKLGNQGKVVDGV---EPLICGKRSNPGKTGIVICGERGIVIVG 73
           G L+G  L   D   G  LG  G ++ GV   + ++ G     G    V+ GE GIV  G
Sbjct: 712 GGLLGGLLGD-DGLLGGLLGGDGGLLGGVLGEDGIVGGLLGGDGGLLGVVIGENGIV-GG 771

Query: 74  VLGIEGVVIGGVREIEGIVIVIGGEPGIMIGGVPEIGGKPGILMGERPGIVLG--GKPGI 133
           +LG EG ++GGV   +GIV  + G  G ++GGV    G  G L+G   G++ G  G+ GI
Sbjct: 772 LLGGEGGLLGGVLGEDGIVGGLLGGDGGLLGGVLGENGIVGGLLGGDGGLLGGVLGENGI 831

Query: 134 MIVLLGVEGAVIGGILGIEGVVIG--GVPGRVICGILGIGEMEIGGIGRDDVGRL 182
           +  LLG +G ++GG+LG +G+V G  G  G ++ G+LG   + +GG+   D G L
Sbjct: 832 VGGLLGGDGGLLGGVLGEDGIVGGLLGGDGGLLGGVLGENGI-VGGLLGGDGGLL 883

[Close]

BLAST of Lag0014704 vs. NCBI nr
Match: PVU99408.1 (hypothetical protein BB559_000728 [Furculomyces boomerangus])

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-05
Identity = 50/148 (33.78%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 38  VVDGVEPLICGKRSNPGKTGI---VICGERGIVIVGVLGIEGVVIGGVREIEGIVIVIG- 97
           VV GV  ++ G     G  G+   V+ G  G+V+  V+G+ GVV+G V  + G+V V+G 
Sbjct: 236 VVVGVVDVVVGVVGVVGVVGVVVGVVVGVVGVVVGAVVGVVGVVVGVVGVVVGVVGVVGV 295

Query: 98  -GEPGIMIGGVPEIGGKPGILMGERPGIVLGGKPGIMIVLLGVEGAVIGGILGIEGVVIG 157
            G  G+++G V  + G  G+++G   G+V+ G  G+++ ++GV   V+G ++G+ GVV+G
Sbjct: 296 VGVVGVVVGVVGVVVGVVGVVVGV-VGVVV-GVVGVVVGVVGVVVGVVGVVVGVVGVVVG 355

Query: 158 GVPG--RVICGILGIGEMEIGGIGRDDV 179
            V G   V+ G++G+    +G +   DV
Sbjct: 356 AVVGVVGVVVGVVGVVVGVVGVVDGSDV 381

The following BLAST results are available for this feature:

BLAST of Lag0014704 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588808.1	1.2e-06	38.86	hypothetical protein SDJN03_17373, partial [Cucurbita argyrosperma subsp. sorori...	[more]
HCM13323.1	1.6e-06	36.17	hypothetical protein [Lachnospiraceae bacterium]	[more]
XP_022927703.1	2.8e-06	41.40	elastin-like [Cucurbita moschata]	[more]
WP_206175362.1	6.8e-05	37.14	hypothetical protein [Variovorax sp. RKNM96] >QSI33116.1 hypothetical protein GN...	[more]
PVU99408.1	8.9e-05	33.78	hypothetical protein BB559_000728 [Furculomyces boomerangus]	[more]

BLAST of Lag0014704 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014704.1	Lag0014704.1	mRNA