Lag0014701 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014701
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease
Location	chr12: 3697175 .. 3702023 (-)
RNA-Seq Expression	Lag0014701
Synteny	Lag0014701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGGTTTTCCCCCTTCGCCCTTCGTCCTTCGTTTCTCAAGGTGTCGGGGATGGAGATCTGAAGCAGCATGGCATTCGACGGGATTTTAACGGAGACCAGATCGTCGGCCGACGGGGTTTTGACGAAGTTGAGGATCCGGAGCAGTGGGAGAAGATAGAATAAGAAAAAGAGAAGAGGGAGGAAAAGAGAGAAAAAAAAAGAAGTCGGCGCCGGTCGGAGAAGGAGAAGAAAAAGTAAGAAGAAGAAGAAGGAGGGAGAAAGAAGAAGAAGAAGGGAGAAAGAAATAATAGAAAATTTAAAAATAATATTATTTTTTTTATTATATTATATTTTTATTTTAAAAAGTTAAAAATTATTTTTTTAATTAAAATAATATTGTCACGTCAGTAGCCTGTTAAATTTAACGACAAAATGGATGGGTAGGGACCAAATTGCTCCTTATCTCAAACCTCAGGGGTTAAATTATTGAGTTTAAAAACTCAGGGACCAAAGTGTAACTTAACTCAAACCTCAGGGACCAAAAATGTATTTTTCCCTATTCTTTTTTAGAAAAAAAAAAAGAAAGTGAAGAGAAAGATGAAGAAAGAAAAAAAGAAATATGAGAGAAAAAGAAAAGGAAAAAAAAAATTTGTTGGCCGTCGGCGGTCAGTGACGGCCGACGGTAAGGTGATGATGGTGAATAAAATGAAGAAGGTGGCGAAGAAGATAGGGAAAAAAGAAATTAAAAAAATTATAAATAATAATATTTTTATTATTTTATTATAATTATATTTAAAAAAACTTAAAAAATATTTTTTTAATAAAATAAATTTGTCGTCAGCATTCCGTTAATTATTAACGGAAAATTGGATGGAGGGACCAAAATGAAACTAAAACCAAACCTCAGGGACTAAATTGTTGAGTTTGAAAACTCAGGATCAAAATGAAACCTAACTCAAACCTCATGGACTAAAAATGTATTTTTCCCAAGAAAACAAAATTACACTAAAAAAAGGAACGAAATAAAAAAAAACTTTTAAAATTGTAGAGACCAATTTGAAACAAAGCCTAACAATAATATACCTAACTAAAATAAAAGTTAAAAAAAAAAAAAAACTGAATTAAAACCTTTTGTTAATTTCATGTACCCAAAATGAAGGATGATACATAAATCCCAACCTCTTAAAAATACAAATGAGATTAACAAAATGGTAACCAAAATATAATAGAGAATAACACATAAAATTAAAATCTCAATGTAATCTTCCAAAATATAATAGAGAATGTATCACAATTGAATGGTGAGAAAAGAGAGATATTGTGCAATAGGTAAATCTTCACCGATTGGATTGTTTTTATCAGAGTTAGAATTACTTGCTCCAAATTTCAAGTGGTTGAATAAATCAACTGTTGCCCACTAAACGTTGATTGGATTGGATGTGGACTTGGTAATTCTAACTCTCCATCTATTGCTACTACTAGTCGATTGATTCGCAAAACAAAATTTTCTTGTAGGGTTGTACGTAGGTGAAGGTCAATCGGACTTGAGAGTAGAACTCTTCTCTTCTTGTTTGATTGACCGTGCTTGTAGATCTTCCCTATATATATTAATTTTTGTTCTTTTGTGAGTTTATTTTAATTTAATCACACTTCAAATAACGTTTTTATATGTAATAGTTTTACTTTTTTTAAATGTCCTGTTAACACTGTAATTTGGTTAATAACCACGTACACTTTTTTTTAAATAATGTTAACCATATACACATAATCTCTCTCTAAAAAGAGTAGTTCTTTTCCATAAATAAATAAATAAAATAAAATAAAAAAGTTAGCTCCACGTTTTTCTTTAACTAATAAAATTATAATTAAAATTTAAAAATTCATTTTTTTTTGGAAATTAATGGTTAATGGCACACTTTGGAAATTTAGAAATTAAATAAGGACAACAGCTAATAGTCCAACTATAAGTTAAGGAACATAGTTGGAATTAGAAAATTAGTATTGGAACATAATGGTCCAAAAATGATTCTCCAAATAAACCATTTTTTATAATAGTATGAAGTATGATATAATATGATAGTATGGATGGATGTGGATTTTTTTTTTCGTAAAAAAAACCACAACCTTTTTTCTTATCAACAAAATAAACAGGATGGAGAAACTTTGTGTGCCAAATTTACCATTTCATTATAAATCATGTACCCTTTTGTCTTATATTTGAAATTATCTAAAGATGAATTTTACATTATCAAAAAAAAAAAAAAAATCTATATTCATGGAACATAATAGACTTGTAAATTTTAAAAAATGTTTGAATAGGTCGAGGGCTTACACAAAATTGAAAGTTGAGGGACCAATTGAACACAAAAGTAAAAGTTTAAACACCTACTAGATACTTTTTAAAGTCGAGAGACTGATTGGACACAAAATTGAAAGTTTGACCTTTCACTGCAAGAAAATATGTTTTCAGCGACAAGTTTTTAGTGACACAGCAAAAACAAGCGGCTAAAGATGACTTTCAGCGGCACTGTAAACCAAATGTCACAATTACATATTTTCATGATAAAATTAGATATCGCTAATAGTTTTAGAGATGCATAAACACGCGCTACAAAAAGTTTTATTTTTAGCAACATGTATATGACGTTGCTAAAGAATGAGTTCGAGGCCACTAAAAATTCTATTTTTATCACGTTTTTAGCAACATTTTTAAATAATCAGGCTTTTTTTTCCCTCCTTCCTTTTCAATCGGCGCCTCCATTGTCTTCTAAAAAAAACCACTTGCCGTTGAATAACACTTCTCTCCCTCGATTTTTTTTCCCCCAACACTTCTCTCCCTCGATTTCTACTGCTCACGCCGAAGTCCCACACCTTGCCGTCAAATCTGCCGTCGAATCAGGGGAGTCTCGTCGTGGAATCTGCCGCCGAAGTCGAATCCTGCCGAGTCTCGCCGTGGAATCCTGCTGCCGAAAGTTCATCTCGTCGAAGCTCAGGTACCCGTTTTCCCGCCGCCCATCCTCAGTACAGAGGTGTTTTTCTTATGAACTTTCTCTGCTTGTTTAAAAACCTTTAAGATGTCAAATTTTTCTGGTATAAATCAAGAATGAAATCCAAATTTTTAATCACTTGTCATGGCTGCTGGAAAAAAAAACATTAAAAAAAAGCCTAAGTCTAAAGGTATATATATGCTTATGTTTCATATCTATAGCGGACTGTATTGGAAGGGAATTCTAAAGGGTATATATATGCTTTAGTATGTGGGATTTTCTAAATAAATGTGTGCAATTATTATGTATTTGAAAGAACATATAGCTTGGATTGTAGTCTATATGTGTATAGTTTGGTGTAGTTTTGTGTGTTATATAGCAACCTATATGTTAAAAAGGAATCTTAAGAAATGGAAAAAGGAGTGATGATTATAGAGAGATAGAAACGCGGCTGAAAAGAGAGAGGTGTAACCCAAATGCTCCCTAATTTACACTAAACTACCATGTCGAGCATAGACTTCACTTCCTAGTTCTATTTAATGTTTATGTCTATAGACATAAACATTCAAAAAAAACATTTACTCGTCAAACCTTTAAGGGCCCTTGAAGAGGTGTAACCCTCTTATTATTGAGAAAAAAGTCTAAGTCTCTCAGGCTAAAGGTAGAAAATTCTTACAGTTTTGACTTGATTGATTGAAAATTCCTCTAATACCTATTTAAAATTTGGCGAAAATGTTTCGTTTCTCTTAACTTTCTAGCCCATCTTTTTGTTTGTCAAATTTTGTACACTTTAAGAATTAAGAAATCTTCGTGGGCTTGACATAAATAACATTGATGGCTCTGGAATATATATAGGTCAGTGTTGCCATTCTTCTTGAGCTTGAATCTTATTTTGTTCACTCTCTCAAAAGTTAAGGTTGTCCATTTTTATTATCTGCTTGTTTATTTTCCTTGGTATTATTGGAATTATAAATGCAGGTAAGGGAGCAAGGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGCAGAACTACTACGTCTTGAAGACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGCAAGGTTACTACTTAGACACTTGCATTTACACTCACTACCATTATTTGTTTACCAAGTGCTAGTTCACATCGAACAATTCTTTACCTATGAATCCTTAGTAATTAATATCTTTGACAATAGATCTTGTAAGTCCTTTTTTTTTTCACTTTCTTTCCTCCCAATTGAAGTAGTTATTTAGTAATATTGAACTATGAAGGAAGGATATCAAACTCAATGTTTTAGTTGACTGCCTATGCTGAGGTGAAAATAATGATTTATGGTTTTGCAAAATAATTATTTTTTGCTTCTAATTGTTGTTGATTGTATTTTGTTGGTTCCTCTTGTCTTGATGAGTTTCTGAAGCAAACAATCGAGTGAGGCTGTTCAATATCAACTTTAGTTTCATGCAGTTAAATATAATTTGAAATGACTGGTATGAATTGGTTATTCGTCGTGGCTTTTAGGATTTTTCCTTTCTACTCTATCTCAACTTTTGCATTTCTGTGTTTAGATTCATGGATCTTCATCCATTCTTTATTTTAAAATTTACACTTTTCAAAATGTTTGCCATGCTAAATGGTAAATCCAGTACATGAAAATAAGGTACTCTAGGAGTGTTAAATGATAATTTAGTACACCATCGTTTTCTGGATGGATATTTTTCCACTGTGATCTTTATGTTGTGTTCAATGTTTGAGCTAATATTTTAGCAGGTTTTGCATTTGTATAAATTGTGGAAGATTTTTGTATGATAGTATAAAAAATGTCATTTATGTTACTCTTATTGCCTCCTGTAGGTTCATGGTTCTTGTGTGTAG

mRNA sequence

ATGAAGGGGGTTTTCCCCCTTCGCCCTTCGTCCTTCGTTTCTCAAGGTGTCGGGGATGGAGATCTGAAGCAGCATGGCATTCGACGGGATTTTAACGGAGACCAGATCGTCGGCCGACGGGGTTTTGACGAAGTTGAGGATCCGGAGCAGGGAGTCTCGTCGTGGAATCTGCCGCCGAAGTCGAATCCTGCCGAGTCTCGCCGTGGAATCCTGCTGCCGAAAGTTCATCTCGTCGAAGCTCAGGTAAGGGAGCAAGGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGCAGAACTACTACGTCTTGAAGACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGCAAGGTTCATGGTTCTTGTGTGTAG

Coding sequence (CDS)

ATGAAGGGGGTTTTCCCCCTTCGCCCTTCGTCCTTCGTTTCTCAAGGTGTCGGGGATGGAGATCTGAAGCAGCATGGCATTCGACGGGATTTTAACGGAGACCAGATCGTCGGCCGACGGGGTTTTGACGAAGTTGAGGATCCGGAGCAGGGAGTCTCGTCGTGGAATCTGCCGCCGAAGTCGAATCCTGCCGAGTCTCGCCGTGGAATCCTGCTGCCGAAAGTTCATCTCGTCGAAGCTCAGGTAAGGGAGCAAGGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGCAGAACTACTACGTCTTGAAGACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGCAAGGTTCATGGTTCTTGTGTGTAG

Protein sequence

MKGVFPLRPSSFVSQGVGDGDLKQHGIRRDFNGDQIVGRRGFDEVEDPEQGVSSWNLPPKSNPAESRRGILLPKVHLVEAQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGSCV

Homology

[Close]

BLAST of Lag0014701 vs. NCBI nr
Match: XP_038878676.1 (ribonuclease TUDOR 1-like [Benincasa hispida] >XP_038878677.1 ribonuclease TUDOR 1-like [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 80  AQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKV G+
Sbjct: 116 AKVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGA 156

[Close]

BLAST of Lag0014701 vs. NCBI nr
Match: XP_004138013.1 (ribonuclease TUDOR 1 [Cucumis sativus] >KGN63427.1 hypothetical protein Csa_014157 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 80  AQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKV G+
Sbjct: 116 AKVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGA 156

[Close]

BLAST of Lag0014701 vs. NCBI nr
Match: XP_022135072.1 (ribonuclease TUDOR 1-like [Momordica charantia] >XP_022135073.1 ribonuclease TUDOR 1-like [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 80  AQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKV G+
Sbjct: 116 AKVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGA 156

[Close]

BLAST of Lag0014701 vs. NCBI nr
Match: XP_008464356.1 (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo] >ADN33852.1 short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] >KAA0057721.1 staphylococcal nuclease domain-containing protein 1 [Cucumis melo var. makuwa] >TYJ98406.1 staphylococcal nuclease domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 80  AQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKV G+
Sbjct: 116 AKVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGA 156

[Close]

BLAST of Lag0014701 vs. NCBI nr
Match: KAG6589330.1 (Ribonuclease TUDOR 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 80  AQVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VREQGQQKGEVSPYLAELLRLEDQAKQQG GRWSKV GS
Sbjct: 183 AKVREQGQQKGEVSPYLAELLRLEDQAKQQGFGRWSKVPGS 223

[Close]

BLAST of Lag0014701 vs. ExPASy Swiss-Prot
Match: Q8VZG7 (Ribonuclease TUDOR 1 OS=Arabidopsis thaliana OX=3702 GN=TSN1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 80  AQVREQGQQ-KGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VRE GQQ + +VSPY+ ELL+LE+ AKQ+G GRWSKV G+
Sbjct: 114 AKVREPGQQNQDKVSPYIKELLQLEELAKQEGYGRWSKVPGA 155

[Close]

BLAST of Lag0014701 vs. ExPASy Swiss-Prot
Match: Q9FLT0 (Ribonuclease TUDOR 2 OS=Arabidopsis thaliana OX=3702 GN=TSN2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 80  AQVREQGQQ-KGEVSPYLAELLRLEDQAKQQGLGRWSKVHGS 121
           A+VR  GQQ + +VSPY+AEL +LE+QA+Q+G GRWSKV G+
Sbjct: 116 AKVRRPGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSKVPGA 157

The following BLAST results are available for this feature:

BLAST of Lag0014701 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878676.1	4.2e-11	92.68	ribonuclease TUDOR 1-like [Benincasa hispida] >XP_038878677.1 ribonuclease TUDOR...	[more]
XP_004138013.1	4.2e-11	92.68	ribonuclease TUDOR 1 [Cucumis sativus] >KGN63427.1 hypothetical protein Csa_0141...	[more]
XP_022135072.1	4.2e-11	92.68	ribonuclease TUDOR 1-like [Momordica charantia] >XP_022135073.1 ribonuclease TUD...	[more]
XP_008464356.1	4.2e-11	92.68	PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo] >A...	[more]
KAG6589330.1	5.5e-11	92.68	Ribonuclease TUDOR 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0014701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZG7	1.1e-06	64.29	Ribonuclease TUDOR 1 OS=Arabidopsis thaliana OX=3702 GN=TSN1 PE=1 SV=1	[more]
Q9FLT0	2.5e-06	61.90	Ribonuclease TUDOR 2 OS=Arabidopsis thaliana OX=3702 GN=TSN2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014701.1	Lag0014701.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016442	RISC complex
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003723	RNA binding