Lag0014655 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014655
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionleucine-rich repeat extensin-like protein 4
Locationchr12: 3152159 .. 3152557 (-)
RNA-Seq ExpressionLag0014655
SyntenyLag0014655
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCCTCTCCGACGTCGAAGCTCTTTACATCCGCCACCGCCAGCTTCTCTACTACAGAGACGAGTTCGGTGACTGTGGCAAGCATGTCACCGTCGACCCCTCTCGTCTTTGAAAATGAAAGGATCAGAAACTCCTATATTGTGCTTCAGGCTTGGAAACTCGCCACTTTGTCTGATCCTCTGAATCAAACCGCCAATTGGCTCAGATCTGATGTCTGCAGCTACACCGCGCGTCTACTGTGCTCCTGCATTGGACAACCCCAAGATCCGCACCGTCGTCAGAATCGATCTCAACCACAGCGACGTTGTCGGATACCTCCCCAAAGAGCGAGTTCATCTTCCAAACCGAGCCCACCCCCTTCTCACTGCCTCCGCCTTTTGATTACAGGGTGTTGA

mRNA sequence

ATGGTGCCCTCTCCGACGTCGAAGCTCTTTACATCCGCCACCGCCAGCTTCTCTACTACAGAGACGAGTTCGGTGACTGTGGCAAGCATGTCACCGTCGACCCCTCTCGTCTTTGAAAATGAAAGGATCAGAAACTCCTATATTGTGCTTCAGGCTTGGAAACTCGCCACTTTGTCTGATCCTCTGAATCAAACCGCCAATTGGCTCAGATCTGATGTCTGCAGCTACACCGCGCGTCTACTGTGCTCCTGCATTGGACAACCCCAAGATCCGCACCGTCGTCAGAATCGATCTCAACCACAGCGACGTTGTCGGATACCTCCCCAAAGAGCGAGTTCATCTTCCAAACCGAGCCCACCCCCTTCTCACTGCCTCCGCCTTTTGATTACAGGGTGTTGA

Coding sequence (CDS)

ATGGTGCCCTCTCCGACGTCGAAGCTCTTTACATCCGCCACCGCCAGCTTCTCTACTACAGAGACGAGTTCGGTGACTGTGGCAAGCATGTCACCGTCGACCCCTCTCGTCTTTGAAAATGAAAGGATCAGAAACTCCTATATTGTGCTTCAGGCTTGGAAACTCGCCACTTTGTCTGATCCTCTGAATCAAACCGCCAATTGGCTCAGATCTGATGTCTGCAGCTACACCGCGCGTCTACTGTGCTCCTGCATTGGACAACCCCAAGATCCGCACCGTCGTCAGAATCGATCTCAACCACAGCGACGTTGTCGGATACCTCCCCAAAGAGCGAGTTCATCTTCCAAACCGAGCCCACCCCCTTCTCACTGCCTCCGCCTTTTGATTACAGGGTGTTGA

Protein sequence

MVPSPTSKLFTSATASFSTTETSSVTVASMSPSTPLVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQPQDPHRRQNRSQPQRRCRIPPQRASSSSKPSPPPSHCLRLLITGC
Homology
BLAST of Lag0014655 vs. NCBI nr
Match: XP_023007157.1 (leucine-rich repeat extensin-like protein 4 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQP 89
           LVFENERIRN+YI LQAWKLA LSDPLNQTANW+ SDVC+YT     S +  P
Sbjct: 65  LVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSDVCTYTGVYCASALDNP 117

BLAST of Lag0014655 vs. NCBI nr
Match: KAG6587943.1 (Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQP 89
           LVFENERIRN+YI LQAWKLA LSDPLNQTANW+ SDVC+YT       +  P
Sbjct: 61  LVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSDVCTYTGVYCAPALDNP 113

BLAST of Lag0014655 vs. NCBI nr
Match: KAG7021831.1 (Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQP 89
           LVFENERIRN+YI LQAWKLA LSDPLNQTANW+ SDVC+YT       +  P
Sbjct: 61  LVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSDVCTYTGVYCAPALDNP 113

BLAST of Lag0014655 vs. NCBI nr
Match: XP_023531535.1 (leucine-rich repeat extensin-like protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQP 89
           LVFENERIRN+YI LQAWKLA LSDPLNQTANW+ SDVC+YT       +  P
Sbjct: 61  LVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSDVCTYTGVYCAPALDNP 113

BLAST of Lag0014655 vs. NCBI nr
Match: XP_022933483.1 (leucine-rich repeat extensin-like protein 4 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQP 89
           LVFENERIRN+YI LQAWKLA LSDPL QTANW+ SDVC+YT       +  P
Sbjct: 61  LVFENERIRNAYIALQAWKLAILSDPLKQTANWVGSDVCTYTGVYCAPALDNP 113

BLAST of Lag0014655 vs. ExPASy Swiss-Prot
Match: Q9SN46 (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-11
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYT 78
           LVFEN R+RN+YI LQAWK A LSDP N T NW+ SDVCSYT
Sbjct: 71  LVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYT 112

BLAST of Lag0014655 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCS 84
           L FEN R+RN+YI LQAWK A LSDP N T+NW+ S+VC+YT  + CS
Sbjct: 59  LNFENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTG-VFCS 105

BLAST of Lag0014655 vs. ExPASy Swiss-Prot
Match: Q9LHF1 (Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=LRX4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 36  LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCS 84
           L+FEN R+R++YI LQAWK A LSDP N T NW+ S+VC+YT  + CS
Sbjct: 67  LIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTG-VFCS 113

BLAST of Lag0014655 vs. ExPASy Swiss-Prot
Match: Q9XIB6 (Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 36 LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSY 77
          L FEN+R++ +YI LQAWK A  SDP   TANW+ SDVCSY
Sbjct: 52 LKFENDRLKRAYIALQAWKKAIYSDPFKTTANWVGSDVCSY 92

BLAST of Lag0014655 vs. ExPASy Swiss-Prot
Match: O65375 (Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRX1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 36 LVFENERIRNSYIVLQAWKLATLSDPLNQTANWLRSDVCSYTARLLCSCIGQPQDPHRR 95
          L FEN ++R +YI LQ+WK A  SDP N TANW  SDVCSY       C   P  P  R
Sbjct: 44 LKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNG---IYCAPSPSYPKTR 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023007157.11.4e-1271.70leucine-rich repeat extensin-like protein 4 [Cucurbita maxima][more]
KAG6587943.15.4e-1269.81Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma sub... [more]
KAG7021831.15.4e-1269.81Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma sub... [more]
XP_023531535.15.4e-1269.81leucine-rich repeat extensin-like protein 4 [Cucurbita pepo subsp. pepo][more]
XP_022933483.12.7e-1167.92leucine-rich repeat extensin-like protein 4 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9SN462.8e-1173.81Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9T0K55.3e-1062.50Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9LHF15.3e-1060.42Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9XIB65.8e-0963.41Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thali... [more]
O653752.2e-0850.85Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..122
NoneNo IPR availablePANTHERPTHR32093LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATEDcoord: 32..82
NoneNo IPR availablePANTHERPTHR32093:SF125LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4coord: 32..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014655.1Lag0014655.1mRNA