Lag0014601 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014601
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPhloem filament protein
Locationchr12: 2538016 .. 2538372 (+)
RNA-Seq ExpressionLag0014601
SyntenyLag0014601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAGTTGCAAAGTTTGCTGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAAGAATGTTGATTGTGGTTGGTATGTGGAGCTGGCGGGTGGAAAATTTCTGGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGACATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTCAACTGA

mRNA sequence

ATGGCAGCCGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAGTTGCAAAGTTTGCTGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAAGAATGTTGATTGTGGTTGGTATGTGGAGCTGGCGGGTGGAAAATTTCTGGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGACATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTCAACTGA

Coding sequence (CDS)

ATGGCAGCCGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAGTTGCAAAGTTTGCTGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAAGAATGTTGATTGTGGTTGGTATGTGGAGCTGGCGGGTGGAAAATTTCTGGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGACATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTCAACTGA

Protein sequence

MAAVARIAPNDIVLKAMDKSVSNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTFKNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVSVGLDIFDPKNWNLEAFNPLAVN
Homology
BLAST of Lag0014601 vs. NCBI nr
Match: KAG6588756.1 (hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 1  MAAVARIAPNDIVLK-AMDKSV--SNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTF 60
          MAAV   APND + +  +D ++   + W+PIP+V ++ V  VAKFAVE YN++    + +
Sbjct: 1  MAAVVH-APNDPINQLKIDGNLLCPSKWIPIPNVSEICVQNVAKFAVEDYNLEHKESFKY 60

Query: 61 KNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVS 97
          KN+ CGW++EL G      LHV V D LG   +++VVVS
Sbjct: 61 KNIKCGWFMELKGEDLAFRLHVEVKDCLGRVFEMDVVVS 98

BLAST of Lag0014601 vs. NCBI nr
Match: XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 9.1e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 1  MAAVARIAPNDIVLKAMDKS---VSNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTF 60
          MA VA IA ND + +          + W+ IP V +V V  +AKFAV+ YN+     + +
Sbjct: 1  MAVVAHIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60

Query: 61 KNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVS 97
          K++ CGW++EL G     HLH+ V D LG   +++VVVS
Sbjct: 61 KSIKCGWFMELKGEDLAFHLHIEVKDCLGRIFELDVVVS 99

BLAST of Lag0014601 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-10
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 1  MAAVARIAPNDIVLKAMDKS---VSNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTF 60
          MA VA+IA ND + +          + W+ IP V +V V  +AKFAVE YN+     + +
Sbjct: 1  MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60

Query: 61 KNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVS 97
          K++ CGW++EL G      LH+ V D LG   ++ VVVS
Sbjct: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVS 99

BLAST of Lag0014601 vs. NCBI nr
Match: KAG6588759.1 (hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-10
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 1  MAAVARIAPNDIVLKAMDKS---VSNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTF 60
          MA VA+IA ND + +          + W+ IP V +V V  +AKFAV+ YN+     + +
Sbjct: 1  MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60

Query: 61 KNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVS 97
          +++ CGW++EL G      LH+VV D LG   +++VVVS
Sbjct: 61 QSIKCGWFMELKGEDLAFRLHIVVKDCLGRIFELDVVVS 99

BLAST of Lag0014601 vs. NCBI nr
Match: KAG6588757.1 (hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-10
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 1  MAAVARIAPNDIVLKAMDKS---VSNNWLPIPSVWDVIVDEVAKFAVEQYNIQFGGHYTF 60
          MA VA++A ND + +          + W+ IP V +V V  VAKFAVE YN+     + +
Sbjct: 1  MAVVAQVALNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNVAKFAVEDYNLVHKESFKY 60

Query: 61 KNVDCGWYVELAGGKFLVHLHVVVTDFLGGTLKIEVVVS 97
          K++ CGW++EL G      LHV V D LG    ++VVVS
Sbjct: 61 KSIKCGWFMELKGEDLAYRLHVEVKDCLGRIFVLDVVVS 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6588756.11.1e-1143.43hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023522970.19.1e-1139.39uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo][more]
KAG6588758.13.5e-1039.39hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588759.13.5e-1038.38hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588757.15.9e-1040.40hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.10coord: 33..115
e-value: 2.0E-5
score: 26.5
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 24..90
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 35..97
e-value: 7.1E-14
score: 51.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014601.1Lag0014601.1mRNA