Lag0014594 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014594
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase family protein
Location	chr12: 2423823 .. 2428232 (+)
RNA-Seq Expression	Lag0014594
Synteny	Lag0014594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGCATCGTACCAACGCTTTCCAAAGGTGAAGATCCGCGAGCTCAGAGATGACTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATCGACCTCGTAGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAACGTGCCATGTCCATGCGTTTCTCTCGCGACTGCGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAATGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTGCCTGTTGATTTCTCTGATGCTGCTGCGGCTACTGGTGAAGCGCTCGATACCAAGTATTTCCCTCTTACTCTTCTCTCTATTAGTATCGTTGCTATCTTCTCGGCTATATTAAGTTATTCCATTGGGTTGGGTAGCCCTAGGCCTGGTCTGTACTGTTTCGACTGCAACTCCATTTGCAATTCGGGTTACAAATGGAGGCTGAAAATACATCTTAGAGATAGTCTATTACTTCTACTTAGGAGCTTGGCCTCTAAAGTTCTGATTCATTCTTTCTTTAAAAATTGCTGTATGTTTGTAAGATAATAATCTCCTTTCTTGTTCTGTTGGACGCTATCATTTTCCTCTGCTTGTTGGTTCACTCACAGGGCAGCAATTTCATTTTAGGCGAATAAATGGGAAAAATTGCGTCTTGTAGAATAAGTTTGTGATGAGAAAGAATGATCAATTTGGGACACCTATAATCTGTTCGACCGAATGCCTCAAGCAACCCACCTCACTACCGTAACCATGAATTTTCTTGCATTCTTCTTGTATGATTTCCTGACTGAAGTTTACATAAAAAAAGAGATTGTATTGGGGAAAATAACATTTTAATCTAGCATCATTATGGTCCATGAAGTAATTGTTGCTCCTCAATTTGAGCTGGTTTTGGGATAATTGTAGAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGAGGCTGAGAGCCATTGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCGGCAACTGTAACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTAACACTAGAGGAAAAGAGAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACCCACCAGGTTCTTCTCATATAACCTCGATTCTTTTTCCTTTTATTTCTTGCAATGGCTTTCTGAAATTTTGAAGTTGCTCTCTGTAGTATTATGCAATTTCGTAGAGGGTTGTGTTGAAGAGCTGATCTGAACTGTATATCTCCTCTAATATCCCTCCGTTGTTCGTGGTTTGTCATGCAGAGTCGGCATGTCTTTAATTCTTGATAATAAACTATAGTACTCTGCTGTTTCTTTTGCTTCTCGTAAGTGGGAGAGCTAAAATAAGAAGCAAGAAAGATATTAGTTTTGTGGTGGATTTATGTTGGAATTTGGCCAATGTATATTGATAATGATGAAGTTGGTCGCATTAATTTTCTTGTTACTGATTTGGTTAAAGAGATAGTTTCTAGTTAATACTGCGTGGTTTAGAAGATAGAATTTAGTACTGCTTATAATTCCATGACCTCGTAAAGAAATGTCTTGTTGTACTTAATTTTGTAGATCTTTTAGCATCACATGTTTGAAAGATATTTGTTTGTGTTCCCTGCAAGTTTTAGATGGCAACTCTGGTCCTTTATGATAACCTTATTTACATGACACCGTCTGAAGGTGTTTTTACCCTTCCATTTTTTAATAGGAAACAATATTTCATTGAGATAAATATACAAAAAGCAGCCGTGCTGATGAGCTAACAGGTTAAAAAGAAACCTTTAAGTTAGCCAATACATCATTTTAACTGTAGTTAGAAAAAAGGTTACTTTTACACCAAGATAAAGCAAGAGCAAGAATGGAATTATATAAGCATTTAAGAGAGCACTTTTTTGCTAGAAGGGTCAGTTATTCCTTTCTAACCAAAAATACCAGAAAAACGTCCTGTGTATATGAAAAAAAAACTTCTATATATGAAGGAGCATGATTAGAAAACTTTGTCTTGAGTTGTGCACCAATTCAATGATTAAGCCATAGAGGGTTGATATGAATTCCCTTTGGACCAAGTAAACTTGATACTAAAAGAGTTGAAATCTCAGTGGCACATAGGGCTCAGATACTAAATGGAGTGAACTCCCTTGGAAATTGAAGTATGAACCATGTTTGGTATCAGAGCACCATTGGTATCATTGCAAGGGTACTGCTTTTGTAAATGGTTGTGTGTGTTAATACTCCCATGACAAAGCAACCAAAGGAAGAATTTGATCTTTTCAGGATATTTGCTCCTCTAGATCAAATCATATAGAGTGGAAAAAGGAGAAACACAGAAGCTAGATATCTCTCAAAATATAGACTGAACCCTGAATTTGTTGCGTGGAAACAGAGGTCATAGAATAGGCATATAATGAACCTCTAGATCAAAATAAGCTTGTTGAGAGAGCAGTCTACTAAGGCAATCCACAACAATAATGAACCAAAAAGGAGATGGGGGATCTCCTTGTTGAGCCCTCTTTATGCCGAGATTTTACCTCTAAGGTCGTTTAATAATGAAAAGTAATTTGCACTAGAGACACATGCATTGATCCATTTCCTCCATGTGTTTCCAAAGCCTTTGGCCTTCAAAACTGCATCTAGAAAATCTCAATTAGCCCTGTCATAAGCTTCCTTGACATATTGCTCTAAGACGATTCCCTCCTTTTTCCTTGATTTCCAATCATTAATGATCTCATTTGCAACGAGGAAGGTGTCAAGAATTTGTCTATTGGAAACAAAAGCAAATTGGAATTACGTAATAGTGTATGCGAGGAAACTTTTTAATCTTTCAAGGAGCACTCTTTGCTATAATCTTATAGGTGCATGGAACAAGGCTGATGGGGCGATAATTGTATTCTTTATTTGCTACAGCTTTTCCAGAATCAGACCTAATATAAGTTCATTAAGGCTAGCATTTATAATGCCATTCTTAAAAGTCAGGGAACACTGCTGTCAGGTCTGGTTGAACGATTTTCTACGATTTCTTTGAAAAACTCAGTGGTGAAACTGTTTGGACTGGGCACTTTTTATTAGCATTCCAAGCCATAACAGCCTGCTGTATCTCCACTTTTTGAACAAATCAGCTTCAAGGAGGTTTTCTGTTCAGGTGTAATTGGTGTATTAGGACAAAATTTTCAATCTCACTATTTCCGCTTCTGAATGGTGTAAAATTTAAGAGGGGCTTTCAATGAATTAGTGTTTTTTCATTTAATTGCAGTAATACCCAAATTTTGGGATATTTTGCTTTCTTATGGCTAAAGAAAGTATGGAATATGAATGATCCGAACTTAGCTATTGTTTTGTTTCTGCTAGCCAATGATTTTTATTTTCTTACTTTTCATTTATCGTGTGTTTCTTTATCTGTCTTTATACTAACTTGTTGCTTACTTTGTTTGTAAAGGTCATGGTGGTTGATCCCGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATCACTGCTAGAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTCGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCCGACACCAGGCTTCCCCATATGTTTCTAGGAGGTTAGGCTAACTTTATTTTGTTTTCATGGACAATCTGGTTTTCTGTAAGAAATATGAATGAACCTGGTTAGTGCAGTCTTGTTCACTTATTCGATGCATTTCTAGCTTCCGGAGATAATTAAAATGTTTTCTCTTTGGCATTGATTGGCTCATCCCGATGTTTGACCCAGTTTAGTGGATTATGACTGATAGTTAATTTAGCTTCTAATATTTCCAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATGTTGTTGGATATCTTTGGTTGAAGATTGTCATCAAACATTTACATTGAAGCTTAGACCATTGTTTTAACCTATTGTGAATCAAATTGTGCAGACATGCTTTCTGAAATGTCATTCTCATTTGAAATGGAAGTTCGATAG

mRNA sequence

ATGGAAGGAGCATCGTACCAACGCTTTCCAAAGGTGAAGATCCGCGAGCTCAGAGATGACTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATCGACCTCGTAGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAACGTGCCATGTCCATGCGTTTCTCTCGCGACTGCGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAATGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTGCCTGTTGATTTCTCTGATGCTGCTGCGGCTACTGGTGAAGCGCTCGATACCAAGTATTTCCCTCTTACTCTTCTCTCTATTAGTATCGTTGCTATCTTCTCGGCTATATTAAGTTATTCCATTGGGTTGGGTAGCCCTAGGCCTGGTCTAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGAGGCTGAGAGCCATTGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCGGCAACTGTAACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTAACACTAGAGGAAAAGAGAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACCCACCAGGTCATGGTGGTTGATCCCGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATCACTGCTAGAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTCGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATACATGCTTTCTGAAATGTCATTCTCATTTGAAATGGAAGTTCGATAG

Coding sequence (CDS)

ATGGAAGGAGCATCGTACCAACGCTTTCCAAAGGTGAAGATCCGCGAGCTCAGAGATGACTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATCGACCTCGTAGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAACGTGCCATGTCCATGCGTTTCTCTCGCGACTGCGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAATGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTGCCTGTTGATTTCTCTGATGCTGCTGCGGCTACTGGTGAAGCGCTCGATACCAAGTATTTCCCTCTTACTCTTCTCTCTATTAGTATCGTTGCTATCTTCTCGGCTATATTAAGTTATTCCATTGGGTTGGGTAGCCCTAGGCCTGGTCTAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGAGGCTGAGAGCCATTGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCGGCAACTGTAACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTAACACTAGAGGAAAAGAGAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACCCACCAGGTCATGGTGGTTGATCCCGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATCACTGCTAGAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTCGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATACATGCTTTCTGAAATGTCATTCTCATTTGAAATGGAAGTTCGATAG

Protein sequence

MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRPGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGNALIINFPEAASFGQFLLSFKGHGWNKTRAMVTKQLYMLSEMSFSFEMEVR

Homology

[Close]

BLAST of Lag0014594 vs. NCBI nr
Match: XP_004138895.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_006771 [Cucumis sativus])

HSP 1 Score: 604.4 bits (1557), Expect = 7.3e-169
Identity = 316/351 (90.03%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDLYSSDHTVVPVDFSD+AAATGEALDTK                             
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EKRTWVESCPTRVFELD VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI
Sbjct: 241 EKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. NCBI nr
Match: XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 603.6 bits (1555), Expect = 1.2e-168
Identity = 315/351 (89.74%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDLYSSDHTVVPVDFSD+AAATGEALDTK                             
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK TWVESCPTRVFELDPVTHQVMVV+PEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI
Sbjct: 241 EKXTWVESCPTRVFELDPVTHQVMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. NCBI nr
Match: KAG7022471.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 598.6 bits (1542), Expect = 4.0e-167
Identity = 313/351 (89.17%), Postives = 323/351 (92.02%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           +SKDLYSSDHTVVPVDFSD+AAA GEALDT +  L ++     A  SAI   +       
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTNWVDLFVVCTVKYATTSAIRFTN------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
            G GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 -GRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK +WVES PT+VFELDPVTHQV+VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 EKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 343

[Close]

BLAST of Lag0014594 vs. NCBI nr
Match: XP_038891253.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida])

HSP 1 Score: 592.8 bits (1527), Expect = 2.2e-165
Identity = 309/351 (88.03%), Postives = 315/351 (89.74%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH+DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHNDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDLYSSDHTVVPVDFSD+AAATGEALD+K                             
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDSK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLM+TLT E
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMDTLTPE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EKRTWVESCPTRVFE D VTHQV VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 EKRTWVESCPTRVFEFDSVTHQVTVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. NCBI nr
Match: XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])

HSP 1 Score: 592.4 bits (1526), Expect = 2.9e-165
Identity = 308/351 (87.75%), Postives = 316/351 (90.03%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDL SSDHTVVPVDF+D+AAA+GE LDTK                             
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           E++TWVESCPTRVFE+DP THQV+VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 ERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot
Match: Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.8e-141
Identity = 262/351 (74.64%), Postives = 293/351 (83.48%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TS+DLYS+D TV PVDF+                               +  S+   S  
Sbjct: 121 TSRDLYSADPTVTPVDFT-------------------------------IDSSVSDSSEH 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP I INED+M+TL+ E
Sbjct: 181 K--GIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK   +ES PT+VF +DPVT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I+ ++DSFI
Sbjct: 241 EKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGA+KASQL+LNAID+LKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRG 318

[Close]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot
Match: Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 466.5 bits (1199), Expect = 3.1e-130
Identity = 244/350 (69.71%), Postives = 283/350 (80.86%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TS+DLYS+D TV PVDF+ + ++T ++ + K                             
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP I INE++M TLT E
Sbjct: 181 ---GIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK   +ES PT+VF +DPVT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I  + DSF+
Sbjct: 241 EKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFV 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMR 351
           FTVESTGA+KASQL+LNAIDILKQKLDA+RLSD+TVEADDQFGELGAHMR
Sbjct: 301 FTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMR 317

[Close]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot
Match: Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.1e-66
Identity = 145/325 (44.62%), Postives = 197/325 (60.62%), Query Frame = 0


Query: 8   RFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
           R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 68  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DL S
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 128 SDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRPGLGIII 187
            +  V+PV  S   ++  E                                      I I
Sbjct: 130 QNSAVIPVS-SQVTSSNSEQ------------------------------------EIPI 189

Query: 188 VKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVE 247
           VKLRRGQE++LRAIA+KG+GK+HAKWSP+   T+ ++P I +N++ ++ LT ++K  WV 
Sbjct: 190 VKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVG 249

Query: 248 SCPTRVFELDP--VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVES 307
           SCPT+V+   P   T QV + DP    Y  E  KKAE+ GK  LV +  ++D FIFTVES
Sbjct: 250 SCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVES 294

Query: 308 TGAIKASQLILNAIDILKQKLDAVR 331
           +GA+K   ++L AI I+K+KL  ++
Sbjct: 310 SGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot
Match: Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-43
Identity = 119/322 (36.96%), Postives = 167/322 (51.86%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRPGLG 185
           L S+   V+PV   +      + ++                                   
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQD--------------------------------D 182

Query: 186 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRT 245
           I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P     ++ +      +   
Sbjct: 183 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP-----DNALRHTVYPKPEE 242

Query: 246 WVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVE 305
           W +S      ELD         D     YD                    + + F + VE
Sbjct: 243 WPKS---EYSELDE--------DESQAPYDP-----------------NGKPERFYYNVE 256

Query: 306 STGAIKASQLILNAIDILKQKL 327
           S G+++   ++L+A+  LK+KL
Sbjct: 303 SCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot
Match: P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 6.5e-43
Identity = 118/322 (36.65%), Postives = 167/322 (51.86%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRPGLG 185
           L S+   V+PV   +      + ++                                   
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQD--------------------------------D 182

Query: 186 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRT 245
           I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P     ++ +      +   
Sbjct: 183 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP-----DNALRHTVYPKPEE 242

Query: 246 WVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVE 305
           W +S      ELD         D     YD                    + + F + VE
Sbjct: 243 WPKS---EYSELDE--------DESQAPYDP-----------------NGKPERFYYNVE 256

Query: 306 STGAIKASQLILNAIDILKQKL 327
           S G+++   ++L+A+  LK+KL
Sbjct: 303 SCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Lag0014594 vs. ExPASy TrEMBL
Match: A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 3.5e-169
Identity = 316/351 (90.03%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDLYSSDHTVVPVDFSD+AAATGEALDTK                             
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EKRTWVESCPTRVFELD VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI
Sbjct: 241 EKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. ExPASy TrEMBL
Match: A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 6.0e-169
Identity = 315/351 (89.74%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDLYSSDHTVVPVDFSD+AAATGEALDTK                             
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK TWVESCPTRVFELDPVTHQVMVV+PEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI
Sbjct: 241 EKXTWVESCPTRVFELDPVTHQVMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. ExPASy TrEMBL
Match: A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.4e-165
Identity = 308/351 (87.75%), Postives = 316/351 (90.03%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TSKDL SSDHTVVPVDF+D+AAA+GE LDTK                             
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           E++TWVESCPTRVFE+DP THQV+VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 ERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. ExPASy TrEMBL
Match: A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 5.3e-165
Identity = 308/351 (87.75%), Postives = 314/351 (89.46%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           +SKDLYSSDHTVVPVDFSD+AAA GEALDTK                             
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK +WVES PT+VFELDPVTHQV+VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 EKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. ExPASy TrEMBL
Match: A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 5.3e-165
Identity = 308/351 (87.75%), Postives = 314/351 (89.46%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           +SKDLYSSDHTVVPVDFSD+AAA GEALDTK                             
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE
Sbjct: 181 ---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK +WVES PT+VFELDPVTHQV+VVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFI
Sbjct: 241 EKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 319

[Close]

BLAST of Lag0014594 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 503.8 bits (1296), Expect = 1.3e-142
Identity = 262/351 (74.64%), Postives = 293/351 (83.48%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TS+DLYS+D TV PVDF+                               +  S+   S  
Sbjct: 121 TSRDLYSADPTVTPVDFT-------------------------------IDSSVSDSSEH 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP I INED+M+TL+ E
Sbjct: 181 K--GIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK   +ES PT+VF +DPVT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I+ ++DSFI
Sbjct: 241 EKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFI 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRG 352
           FTVESTGA+KASQL+LNAID+LKQKLDAVRLSDDTVEADDQFGELGAHMRG
Sbjct: 301 FTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRG 318

[Close]

BLAST of Lag0014594 vs. TAIR 10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 466.5 bits (1199), Expect = 2.2e-131
Identity = 244/350 (69.71%), Postives = 283/350 (80.86%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TS+DLYS+D TV PVDF+ + ++T ++ + K                             
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP I INE++M TLT E
Sbjct: 181 ---GIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDE 240

Query: 241 EKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 300
           EK   +ES PT+VF +DPVT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I  + DSF+
Sbjct: 241 EKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFV 300

Query: 301 FTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMR 351
           FTVESTGA+KASQL+LNAIDILKQKLDA+RLSD+TVEADDQFGELGAHMR
Sbjct: 301 FTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMR 317

[Close]

BLAST of Lag0014594 vs. TAIR 10
Match: AT2G15400.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 321.6 bits (823), Expect = 8.8e-88
Identity = 171/263 (65.02%), Postives = 200/263 (76.05%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPR 180
           TS+DLYS+D TV PVDF+ + ++T ++ + K                             
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHK----------------------------- 180

Query: 181 PGLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLE 240
              GIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP I INE++M TLT E
Sbjct: 181 ---GIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDE 230

Query: 241 EKRTWVESCPTRVFELDPVTHQV 264
           EK   +ES PT+VF +DPVT QV
Sbjct: 241 EKIDLIESSPTKVFGIDPVTGQV 230

[Close]

BLAST of Lag0014594 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-28
Identity = 101/331 (30.51%), Postives = 162/331 (48.94%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRP 182
           + DL             + +    E+ +    P T  S S      ++  ++    +P  
Sbjct: 188 TSDLKW---------LPNGSELLRESENKTSKPKTYTSFSCSQ--DSLPEFANNPITP-C 247

Query: 183 GLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEE 242
            L I+I KL  GQE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L    
Sbjct: 248 DLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA--- 307

Query: 243 KRTWVESCPTRVFELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDS 302
               V  CP  VF+++ +     +  V  P   T   E ++  + +     VD+ + ++ 
Sbjct: 308 -ERLVNVCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNH 367

Query: 303 FIFTVESTGAIKASQLILNAIDILKQKLDAV 330
           FIF +ESTG++    L   A+ IL+ K +A+
Sbjct: 368 FIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of Lag0014594 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-28
Identity = 101/331 (30.51%), Postives = 162/331 (48.94%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDLYSSDHTVVPVDFSDAAAATGEALDTKYFPLTLLSISIVAIFSAILSYSIGLGSPRP 182
           + DL             + +    E+ +    P T  S S      ++  ++    +P  
Sbjct: 188 TSDLKW---------LPNGSELLRESENKTSKPKTYTSFSCSQ--DSLPEFANNPITP-C 247

Query: 183 GLGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEE 242
            L I+I KL  GQE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L    
Sbjct: 248 DLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA--- 307

Query: 243 KRTWVESCPTRVFELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDS 302
               V  CP  VF+++ +     +  V  P   T   E ++  + +     VD+ + ++ 
Sbjct: 308 -ERLVNVCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNH 367

Query: 303 FIFTVESTGAIKASQLILNAIDILKQKLDAV 330
           FIF +ESTG++    L   A+ IL+ K +A+
Sbjct: 368 FIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

The following BLAST results are available for this feature:

BLAST of Lag0014594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138895.1	7.3e-169	90.03	DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343....	[more]
XP_008441761.1	1.2e-168	89.74	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
KAG7022471.1	4.0e-167	89.17	DNA-directed RNA polymerases II, IV and V subunit 3 [Cucurbita argyrosperma subs...	[more]
XP_038891253.1	2.2e-165	88.03	DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]	[more]
XP_022147788.1	2.9e-165	87.75	DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >...	[more]

BLAST of Lag0014594 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39211	1.8e-141	74.64	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
Q39212	3.1e-130	69.71	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
Q54DH7	7.1e-66	44.62	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
Q3T0Q3	2.2e-43	36.96	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
P97760	6.5e-43	36.65	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of Lag0014594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1	3.5e-169	90.03	RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ...	[more]
A0A1S3B3P9	6.0e-169	89.74	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
A0A6J1D221	1.4e-165	87.75	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ...	[more]
A0A6J1JIE7	5.3e-165	87.75	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=...	[more]
A0A6J1ELW4	5.3e-165	87.75	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O...	[more]

BLAST of Lag0014594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15430.1	1.3e-142	74.64	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	2.2e-131	69.71	DNA-directed RNA polymerase family protein	[more]
AT2G15400.2	8.8e-88	65.02	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	2.7e-28	30.51	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	2.7e-28	30.51	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..332 e-value: 7.8E-92 score: 321.1
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 23..326 e-value: 8.2E-21 score: 74.8
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 10..328 e-value: 3.8E-74 score: 251.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 10..334
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 47..211 e-value: 3.8E-74 score: 251.5
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..139
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 183..215
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..214 e-value: 8.0E-31 score: 106.7
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 3..143 coord: 179..349
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 179..349
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 3..143
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 10..335 e-value: 5.64685E-127 score: 365.003
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014594.1	Lag0014594.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity