Lag0014545 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014545
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionvacuolar-sorting receptor 3-like
Locationchr12: 1935824 .. 1936485 (+)
RNA-Seq ExpressionLag0014545
SyntenyLag0014545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTCAAAAGTCGGGTTTGAGTTTGTTTTTAGGGTTTCTTCTTGTGCTGTCTTTGGTGCCACCCTCTCTGGCCAAGTTCGTGGTTGAAAAGAATAGCTTGAGGGTTACATCGCCCGAGAATTTGAAAGGTACCTACGATAGTGCCATTGGGAATTTTGGAATTCCTCAATATGGAGGTAGCATGTCTGGAACTGTGGTGTTTCCAAAGGAGAATCAGAAGGGTTGTAGAGAGTTCAGCGATGCTGGGATTTCGTTCGAGTCGAAACCAGGAGCTCTCCCTACGTTCGTTTTGGTTGATCGAGGAGGTAAATTTCGCTTTTAGTTATGATTTTTGTTATTGGTAAGTCGTTGTTTGGTTCTTTTGAGGCTGAATTGGGTTCCATTTGGCTAATCGAAGAAATGATATTCTCTTTCTTTGTTGAGTAAGTGTAGTGCTTGTTTGTCTAAATGCTGCTTGAGTTTGTTAAAGTAATGGTTCATTTCATTAACCAAGAGAATTCAGTTGTTTGGGTCTTGAGTTTTTCGGGAGTTTTGTTATATTGAAATTTGGGAGGCTGCCTAGTTCTTTTCGTTTTTGTCTCGTTTTAGATAGGAAACTGGAACTCTGTATCTAGAGAAAAGTTGGTTGAAAGAAGGGAGAGGAGAGGAATCGCCTGA

mRNA sequence

ATGGAGCTTCAAAAGTCGGGTTTGAGTTTGTTTTTAGGGTTTCTTCTTGTGCTGTCTTTGGTGCCACCCTCTCTGGCCAAGTTCGTGGTTGAAAAGAATAGCTTGAGGGTTACATCGCCCGAGAATTTGAAAGGTACCTACGATAGTGCCATTGGGAATTTTGGAATTCCTCAATATGGAGGTAGCATGTCTGGAACTGTGGTGTTTCCAAAGGAGAATCAGAAGGGTTGTAGAGAGTTCAGCGATGCTGGGATTTCGTTCGAGTCGAAACCAGGAGCTCTCCCTACGTTCGTTTTGGTTGATCGAGGAGGAAACTGGAACTCTGTATCTAGAGAAAAGTTGGTTGAAAGAAGGGAGAGGAGAGGAATCGCCTGA

Coding sequence (CDS)

ATGGAGCTTCAAAAGTCGGGTTTGAGTTTGTTTTTAGGGTTTCTTCTTGTGCTGTCTTTGGTGCCACCCTCTCTGGCCAAGTTCGTGGTTGAAAAGAATAGCTTGAGGGTTACATCGCCCGAGAATTTGAAAGGTACCTACGATAGTGCCATTGGGAATTTTGGAATTCCTCAATATGGAGGTAGCATGTCTGGAACTGTGGTGTTTCCAAAGGAGAATCAGAAGGGTTGTAGAGAGTTCAGCGATGCTGGGATTTCGTTCGAGTCGAAACCAGGAGCTCTCCCTACGTTCGTTTTGGTTGATCGAGGAGGAAACTGGAACTCTGTATCTAGAGAAAAGTTGGTTGAAAGAAGGGAGAGGAGAGGAATCGCCTGA

Protein sequence

MELQKSGLSLFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRGGNWNSVSREKLVERRERRGIA
Homology
[Close]
BLAST of Lag0014545 vs. NCBI nr
Match: XP_022148747.1 (vacuolar-sorting receptor 3-like [Momordica charantia])

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-46
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MELQKSGLSLFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYG 60
           MELQKSGLSLFLGFLLVLSLVP S AKFVVEKNSLRVTSPE+LKGTYDSAIGNFGIPQYG
Sbjct: 4   MELQKSGLSLFLGFLLVLSLVPLSAAKFVVEKNSLRVTSPEDLKGTYDSAIGNFGIPQYG 63

Query: 61  GSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           GSMSGTVV+PKENQKGCREFSDAGISF+SKPGALPTFVLVDRG
Sbjct: 64  GSMSGTVVYPKENQKGCREFSDAGISFQSKPGALPTFVLVDRG 106

[Close]
BLAST of Lag0014545 vs. NCBI nr
Match: XP_023553795.1 (vacuolar-sorting receptor 3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MELQKSGLSLFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYG 60
           ME++KSGLSLFLGFLLVLSL   S+AKFVVEKNSLRVTSPE+LKGTYDSAIGNFGIPQYG
Sbjct: 1   MEIRKSGLSLFLGFLLVLSLASLSVAKFVVEKNSLRVTSPEDLKGTYDSAIGNFGIPQYG 60

Query: 61  GSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           GSMSGTVVFPK+NQKGCREFSDAGISF+SKPGALPTFVLVDRG
Sbjct: 61  GSMSGTVVFPKDNQKGCREFSDAGISFQSKPGALPTFVLVDRG 103

[Close]
BLAST of Lag0014545 vs. NCBI nr
Match: XP_023553796.1 (vacuolar-sorting receptor 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MELQKSGLSLFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYG 60
           ME++KSGLSLFLGFLLVLSL   S+AKFVVEKNSLRVTSPE+LKGTYDSAIGNFGIPQYG
Sbjct: 1   MEIRKSGLSLFLGFLLVLSLASLSVAKFVVEKNSLRVTSPEDLKGTYDSAIGNFGIPQYG 60

Query: 61  GSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           GSMSGTVVFPK+NQKGCREFSDAGISF+SKPGALPTFVLVDRG
Sbjct: 61  GSMSGTVVFPKDNQKGCREFSDAGISFQSKPGALPTFVLVDRG 103

[Close]
BLAST of Lag0014545 vs. NCBI nr
Match: XP_022988709.1 (vacuolar-sorting receptor 3-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0 

Query: 1   MELQKSGLSLFLG-FLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQY 60
           ME+QKSGLSLFLG FLL+LSLVP S+AKFVVEKNSLRVTSPE LKGTYDSAIGNFGIPQY
Sbjct: 4   MEVQKSGLSLFLGLFLLLLSLVPLSVAKFVVEKNSLRVTSPEGLKGTYDSAIGNFGIPQY 63

Query: 61  GGSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           GGSMSGTVVFPKENQKGCREFSDAGISF+SKPGALPTFVL+DRG
Sbjct: 64  GGSMSGTVVFPKENQKGCREFSDAGISFQSKPGALPTFVLLDRG 107

[Close]
BLAST of Lag0014545 vs. NCBI nr
Match: KAG6571923.1 (Vacuolar-sorting receptor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 5.0e-44
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MELQKSGLSLFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYG 60
           ME++KSGLSLFLGFLLVLSL   S+AKFVVEKNSLRVTSPE+LKGTYDSAIGNFGIPQYG
Sbjct: 1   MEIRKSGLSLFLGFLLVLSLASLSVAKFVVEKNSLRVTSPEDLKGTYDSAIGNFGIPQYG 60

Query: 61  GSMSGTVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           GSMSGTVVFPK+NQKGC+EFSDAGISF+SKPGALPTFVLVDRG
Sbjct: 61  GSMSGTVVFPKDNQKGCKEFSDAGISFQSKPGALPTFVLVDRG 103

[Close]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match: Q56ZQ3 (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana OX=3702 GN=VSR4 PE=2 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 8.4e-34
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 8   LSLFLGFLLVLSLV--PPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSG 67
           L  +L +LL+LSLV  P + A+FVVEKNSL VTSPE++KGT+DSAIGNFGIPQYGGSM+G
Sbjct: 4   LLCYLPWLLLLSLVVSPFNEARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAG 63

Query: 68  TVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           TVV+PKENQK C+EFSD  ISF+S+PGALPTF+LVDRG
Sbjct: 64  TVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRG 101

[Close]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match: O80977 (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana OX=3702 GN=VSR3 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-33
Identity = 71/98 (72.45%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 8   LSLFLGFLLVLSLV--PPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSG 67
           L  +L +LL+L+L+  P + A+FVVEKNSL VTSPE++KGT+DSAIGNFGIPQYGGSM+G
Sbjct: 4   LLCYLPWLLLLTLLVSPLNDARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAG 63

Query: 68  TVVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           TVV+PKENQK C+EFSD  ISF+S+PGALPTF+LVDRG
Sbjct: 64  TVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRG 101

[Close]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match: P93026 (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana OX=3702 GN=VSR1 PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-29
Identity = 62/97 (63.92%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 8   LSLF-LGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSGT 67
           L LF L FLL+L+L   ++ +FVVEKN+L+VTSP+++KG Y+ AIGNFG+PQYGG++ GT
Sbjct: 3   LGLFTLSFLLILNL---AMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGT 62

Query: 68  VVFPKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           VV+PK NQK C+ +SD  ISF+SKPG LPTFVL+DRG
Sbjct: 63  VVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRG 96

[Close]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match: P93484 (Vacuolar-sorting receptor 1 OS=Pisum sativum OX=3888 GN=BP80 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 10  LFLGFLLVLSLVPPSLAKFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSGTVVF 69
           LFLGF+L  SL   S A+FVVEKNSL VTSPE +KG +DSAIGNFGIPQYGGSM+G VV+
Sbjct: 10  LFLGFMLT-SL---STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVY 69

Query: 70  PKENQKGCREFSDAGISFESKPGALPTFVLVDRG 104
           PK+N KGC++F     SF+S+PGALPT +L+DRG
Sbjct: 70  PKDNSKGCKDFDS---SFKSRPGALPTILLLDRG 96

[Close]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match: O22925 (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana OX=3702 GN=VSR2 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-26
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0 

Query: 27  KFVVEKNSLRVTSPENLKGTYDSAIGNFGIPQYGGSMSGTVVFPKENQKGCREFSDAGIS 86
           +FVVEKN+LRVTSPE+++G Y+ A+GNFG+PQYGGSMSG VV+PK NQK C+ F D  IS
Sbjct: 24  RFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEIS 83

Query: 87  FESKPGALPTFVLVDRG 104
           F S+   LPTFVLVDRG
Sbjct: 84  FRSRVAGLPTFVLVDRG 100

The following BLAST results are available for this feature:
BLAST of Lag0014545 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148747.13.2e-4695.15vacuolar-sorting receptor 3-like [Momordica charantia][more]
XP_023553795.12.3e-4491.26vacuolar-sorting receptor 3-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023553796.12.3e-4491.26vacuolar-sorting receptor 3-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022988709.13.0e-4492.31vacuolar-sorting receptor 3-like [Cucurbita maxima][more]
KAG6571923.15.0e-4490.29Vacuolar-sorting receptor 3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lag0014545 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q56ZQ38.4e-3474.49Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana OX=3702 GN=VSR4 PE=2 SV=2[more]
O809774.2e-3372.45Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana OX=3702 GN=VSR3 PE=2 SV=1[more]
P930262.8e-2963.92Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana OX=3702 GN=VSR1 PE=1 SV=2[more]
P934841.2e-2768.09Vacuolar-sorting receptor 1 OS=Pisum sativum OX=3888 GN=BP80 PE=1 SV=1[more]
O229252.2e-2668.83Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana OX=3702 GN=VSR2 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.50.30.30coord: 25..111
e-value: 1.1E-22
score: 82.7
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 10..104
NoneNo IPR availablePANTHERPTHR22765:SF327BNACNNG47180D PROTEINcoord: 10..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014545.1Lag0014545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006896 Golgi to vacuole transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005768 endosome
cellular_component GO:0017119 Golgi transport complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005802 trans-Golgi network
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity