Lag0014521 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014521
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	chr12: 1683845 .. 1685021 (-)
RNA-Seq Expression	Lag0014521
Synteny	Lag0014521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAATAAGATGGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATAAAAGTGCTGGTCTGTTCATGTGGATTGATTATTCCTGCTGGTGGTCCGTGGTTGTAGACCGTATGCGTAATATTCCTGCTATTGTGAGATATAGATAGTTGGAGTACGCAAAATCACCTGTCTCTCCCGTGAGAATAAGTAGACCTAAGACTTTGCTAGAGGTTTTATTTACCAACGCACAGCTCTATAAGTAGGATCTGACTAAAAAGTACTAATCTGTTGGCGTGAATTAACTAGTGACTATTGAGTTTGCTGGTGGTGGTGGTTATAGATAGTAGGTCTTTCAAGGTATGGTCTAAAATGATTCCGGTATAGAAAGAACAGAAAAGTTTCAACAAGTTGAAACTAATCAAGGTCAATAGGAGGTTTCAGAATTTATTGACAAAGTTCGTTCAACGCAGATCTCCAAGGAAGGATAGTTTTGTTAATGTATTCTTGTCGAGAAAAACTATGGTGGTCTCACGTGTAAGTGGCCGAGGGTTTGACAGCATTCCAAGGCTTCCCTTTGGATTTTCTCAACTAAGTTTTCTTTCCTCCTTAGTTCCTGAGGATACTAAGGACTGGAGATTTGTTTTTTCTTTGTGAGAACTATATACTTTTTAGCTCCTTTCTTTGGTTCTTGGCCATCATTTCTGTACAACTTTGCTCCCTTCTACCTCTATTTTTCTTTAATTTTTTATTTTTATTTTTTTTTATAAGAAATTGAGGATTATATTGAAAAGGGAAAAAAAGAACATCCTAAAAGGGGTAGAACCCCTTCGCAAAAGAATGCTCCCCTTTTGCTCTCTTCTACTTTCAATTTTCTCAACACTGCCATCCTTCAATAGAAAAAGAAAAAAGGAAAAAAAGAAAAAAAAGGAAATTATTTTTATGGAGACCATATCCAATTTTCAAAGTTTCCCCCTTCAGATTTTCTTATTGGAACTCTTCATTTATTTCCTCTGCTACTATGTGAAATCTTAGGTGATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTTGATCAACTCGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA

mRNA sequence

ATGACAAGAATAAGATGGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATAAAAGTGCTGGTCTGTTCATGTGGATTGATTATTCCTGCTGGTGGTCCGTGGTTGTAGACCGTATGCGTAATATTCCTGCTATTGTGATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTTGATCAACTCGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA

Coding sequence (CDS)

ATGACAAGAATAAGATGGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATAAAAGTGCTGGTCTGTTCATGTGGATTGATTATTCCTGCTGGTGGTCCGTGGTTGTAGACCGTATGCGTAATATTCCTGCTATTGTGATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTTGATCAACTCGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA

Protein sequence

MTRIRWYLTLFVVYSEVDKSAGLFMWIDYSCWWSVVVDRMRNIPAIVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS

Homology

[Close]

BLAST of Lag0014521 vs. NCBI nr
Match: XP_023530484.1 (LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 47  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS 99
           VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Sbjct: 152 VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Lag0014521 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 47  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS 99
           VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Sbjct: 152 VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Lag0014521 vs. NCBI nr
Match: KAG6588721.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 47  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS 99
           VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Sbjct: 152 VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Lag0014521 vs. NCBI nr
Match: XP_022927841.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 47  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS 99
           VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Sbjct: 152 VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Lag0014521 vs. NCBI nr
Match: KAG7022508.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 47  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS 99
           VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF++LDDDQHHAWTGAQPAS
Sbjct: 195 VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 246

The following BLAST results are available for this feature:

BLAST of Lag0014521 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530484.1	4.0e-20	98.08	LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pe...	[more]
XP_022988955.1	4.0e-20	98.08	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
KAG6588721.1	4.0e-20	98.08	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022927841.1	4.0e-20	98.08	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]	[more]
KAG7022508.1	1.5e-19	96.15	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0014521 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 47..98
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 47..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014521.1	Lag0014521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane