Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTCTCAAGCTCTCCCTCTCCCTCTTCTGTGTCTTGAGCTTCACCACACTTCCCTCTGCCCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCAGCCCGCGCCCAAGTCGGCGTCGGCCCCGTGCAATGGGACGAAAGGGTGGCAAGCTACGCTCGACAGTATGCCAACCAACGCATCAACGACTGTCGATTGATGCACTCCGGTGGCCCGTATGGGGAGAATATCGCATGGGGTAGCCCCGACTTGTCGGGCACCGCGGCGGTTCGGATGTGGGTCGACGAGAAGCAATTCTACGATCATGGCACCAACACATGTGCTGCTGGCAAGGTGTGCGGCCATTACACACAGGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCAAAAGTGAGATGCACCAACGGCCGTGGTACTTTCATCACTTGCAACTATGATCCCAGAGGCAATTTCATAGGGCAGAGGCCATATTGA
mRNA sequence
ATGGATCTTCTCAAGCTCTCCCTCTCCCTCTTCTGTGTCTTGAGCTTCACCACACTTCCCTCTGCCCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCAGCCCGCGCCCAAGTCGGCGTCGGCCCCGTGCAATGGGACGAAAGGGTGGCAAGCTACGCTCGACAGTATGCCAACCAACGCATCAACGACTGTCGATTGATGCACTCCGGTGGCCCGTATGGGGAGAATATCGCATGGGGTAGCCCCGACTTGTCGGGCACCGCGGCGGTTCGGATGTGGGTCGACGAGAAGCAATTCTACGATCATGGCACCAACACATGTGCTGCTGGCAAGGTGTGCGGCCATTACACACAGGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCAAAAGTGAGATGCACCAACGGCCGTGGTACTTTCATCACTTGCAACTATGATCCCAGAGGCAATTTCATAGGGCAGAGGCCATATTGA
Coding sequence (CDS)
ATGGATCTTCTCAAGCTCTCCCTCTCCCTCTTCTGTGTCTTGAGCTTCACCACACTTCCCTCTGCCCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCAGCCCGCGCCCAAGTCGGCGTCGGCCCCGTGCAATGGGACGAAAGGGTGGCAAGCTACGCTCGACAGTATGCCAACCAACGCATCAACGACTGTCGATTGATGCACTCCGGTGGCCCGTATGGGGAGAATATCGCATGGGGTAGCCCCGACTTGTCGGGCACCGCGGCGGTTCGGATGTGGGTCGACGAGAAGCAATTCTACGATCATGGCACCAACACATGTGCTGCTGGCAAGGTGTGCGGCCATTACACACAGGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCAAAAGTGAGATGCACCAACGGCCGTGGTACTTTCATCACTTGCAACTATGATCCCAGAGGCAATTTCATAGGGCAGAGGCCATATTGA
Protein sequence
MDLLKLSLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQYANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY
Homology
BLAST of Lag0014517 vs. NCBI nr
Match:
XP_038887491.1 (pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 143/162 (88.27%), Postives = 155/162 (95.68%), Query Frame = 0
Query: 1 MDLLKLSLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQY 60
MDLLKLSLSLFCVLSFT LPS+LAQDSPQD++NAHNAARAQVGVGPVQWDERVAS+ARQY
Sbjct: 1 MDLLKLSLSLFCVLSFTMLPSSLAQDSPQDYLNAHNAARAQVGVGPVQWDERVASFARQY 60
Query: 61 ANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGHY 120
ANQRINDC+L+HSGGPYGENIAWG PDLSGTAAV+MWV+EKQFY++GTNTCAAGKVCGHY
Sbjct: 61 ANQRINDCKLIHSGGPYGENIAWGWPDLSGTAAVQMWVNEKQFYNYGTNTCAAGKVCGHY 120
Query: 121 TQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
TQVVWR SVRIGCAKV+CTN GTFI CNYDPRGN IGQ+PY
Sbjct: 121 TQVVWRKSVRIGCAKVKCTNNGGTFIICNYDPRGNIIGQKPY 162
BLAST of Lag0014517 vs. NCBI nr
Match:
XP_008455064.1 (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa] >TYK06836.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa])
HSP 1 Score: 307.4 bits (786), Expect = 7.4e-80
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 0
Query: 1 MDLLK--LSLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYAR 60
MD+LK LSLSLFCVL+F LPS+LAQDSP+DFVNAHNAARAQVGVGPV WDERVAS+AR
Sbjct: 1 MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFAR 60
Query: 61 QYANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCG 120
QYANQRINDCRL+HSGGPYGENIAWG PDLSGTAAV+MWV+EKQFY++G+NTCAAGKVCG
Sbjct: 61 QYANQRINDCRLVHSGGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCG 120
Query: 121 HYTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
HYTQVVWRNSVRIGCAKVRCTN RGTFI CNY+PRGN IGQ+PY
Sbjct: 121 HYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYEPRGNIIGQKPY 164
BLAST of Lag0014517 vs. NCBI nr
Match:
XP_023553946.1 (pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 144/163 (88.34%), Postives = 149/163 (91.41%), Query Frame = 0
Query: 1 MDLLKLSLSLFCV-LSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQ 60
MDL KLSLSLF V LSF S+LAQDSPQDFVNAHNAARAQVGVGPVQWDERVAS+ARQ
Sbjct: 1 MDLFKLSLSLFYVGLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQ 60
Query: 61 YANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGH 120
YANQRINDCRL+HSGGPYGENIAWGSPDLSGT AVRMWVDEKQFY+ NTCAAGKVCGH
Sbjct: 61 YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGKVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
YTQVVWRNSVRIGCAKVRCTN RGTFI CNYDPRGN IGQRP+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163
BLAST of Lag0014517 vs. NCBI nr
Match:
XP_022972506.1 (pathogenesis-related protein PR-1 type-like [Cucurbita maxima])
HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 142/163 (87.12%), Postives = 150/163 (92.02%), Query Frame = 0
Query: 1 MDLLKLSLSLF-CVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQ 60
MDL KLSLSLF VLSF S+LAQDSPQDFVNAHNAARAQVGVGP++WDERVAS+ARQ
Sbjct: 1 MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQ 60
Query: 61 YANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGH 120
YANQRINDCRL+HSGGPYGENIAWGSPDLSGT AVRMWVDEKQFY+ TNTCAAGKVCGH
Sbjct: 61 YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
YTQVVWRNSVRIGCAKVRCTN RGTFITCNYDP GN +GQRP+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFITCNYDPPGNVVGQRPF 163
BLAST of Lag0014517 vs. NCBI nr
Match:
XP_022952868.1 (pathogenesis-related protein 1-like [Cucurbita moschata])
HSP 1 Score: 301.6 bits (771), Expect = 4.1e-78
Identity = 142/163 (87.12%), Postives = 149/163 (91.41%), Query Frame = 0
Query: 1 MDLLKLSLSLF-CVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQ 60
MDL KLSLS+F VLSF S+LAQDSPQDFVNAHNAARAQVGVGPVQWDERVAS+ARQ
Sbjct: 1 MDLFKLSLSIFYVVLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQ 60
Query: 61 YANQRINDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGH 120
YANQRINDCRL+HSGGPYGENIAWGSPDLSGT AVRMWVDEKQFY+ NTCAAG+VCGH
Sbjct: 61 YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGRVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
YTQVVWRNSVRIGCAKVRCTN RGTFI CNYDPRGN IGQRP+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163
BLAST of Lag0014517 vs. ExPASy Swiss-Prot
Match:
P35793 (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 100/164 (60.98%), Postives = 121/164 (73.78%), Query Frame = 0
Query: 1 MDLLKLSLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQY 60
M KL + L +S + + AQ+SPQD+V+ HNAARA VGVG V W ++ ++A+ Y
Sbjct: 1 MQTPKLVILLALAMSAAMVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNY 60
Query: 61 ANQRINDCRLMHSGGPYGENIAWGS--PDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCG 120
ANQRINDC+L HSGGPYGENI WGS D + AV WV EK+ YD+G+NTCAAGKVCG
Sbjct: 61 ANQRINDCKLQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCG 120
Query: 121 HYTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
HYTQVVWR S IGCA+V C N RG FITCNY+PRGN +GQ+PY
Sbjct: 121 HYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164
BLAST of Lag0014517 vs. ExPASy Swiss-Prot
Match:
P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 99/155 (63.87%), Postives = 118/155 (76.13%), Query Frame = 0
Query: 8 LSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQYANQRIND 67
L +F L + + AQDSPQD++ HN AR VGVGP+QWDERVA+YAR YA Q +
Sbjct: 10 LIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGN 69
Query: 68 CRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGHYTQVVWRN 127
CRL+HSGGPYGEN+AWGS DLSG +AV MWV EK Y++ NTC VCGHYTQVVWR
Sbjct: 70 CRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC--NGVCGHYTQVVWRK 129
Query: 128 SVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
SVR+GCAKVRC NG GT I+CNYDPRGN++ ++PY
Sbjct: 130 SVRLGCAKVRCNNG-GTIISCNYDPRGNYVNEKPY 161
BLAST of Lag0014517 vs. ExPASy Swiss-Prot
Match:
Q05968 (Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.7e-55
Identity = 99/164 (60.37%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MDLLKLSLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQY 60
M KL++ L ++ + + AQ+SPQD+V+ HNAAR+ VGVG V W ++ ++A+ Y
Sbjct: 1 MQTPKLAILLALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNY 60
Query: 61 ANQRINDCRLMHSGGPYGENIAWGS--PDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCG 120
ANQRINDC+L HSGGPYGENI WGS D + AV WV EK+ YD+G+NTCAAGKVCG
Sbjct: 61 ANQRINDCKLQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCG 120
Query: 121 HYTQVVWRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
HYTQVVWR S IGCA+V C N RG FITCNY+PRGN IGQ+PY
Sbjct: 121 HYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIIGQKPY 164
BLAST of Lag0014517 vs. ExPASy Swiss-Prot
Match:
P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)
HSP 1 Score: 216.1 bits (549), Expect = 3.0e-55
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 0
Query: 6 LSLSLFCVLSFTTL-PSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQYANQR 65
L+ + C ++F L S+ AQ+SPQD++N HNAAR QVGVGP+ WD R+A+YA+ YANQR
Sbjct: 4 LTTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQR 63
Query: 66 INDCRLMHSGGPYGENIAWGSPDLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGHYTQVV 125
I DC ++HS GPYGEN+A P L+ AV+MWVDEK+FYD+ +N+C G VCGHYTQVV
Sbjct: 64 IGDCGMIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGG-VCGHYTQVV 123
Query: 126 WRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
WRNSVR+GCA+VR NG FITCNYDP GNFIGQRP+
Sbjct: 124 WRNSVRLGCARVRSNNG-WFFITCNYDPPGNFIGQRPF 159
BLAST of Lag0014517 vs. ExPASy Swiss-Prot
Match:
Q41359 (Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1)
HSP 1 Score: 214.9 bits (546), Expect = 6.6e-55
Identity = 102/158 (64.56%), Postives = 124/158 (78.48%), Query Frame = 0
Query: 7 SLSLFCVLSFTTLPSALAQDSPQDFVNAHNAARAQVGVGPVQWDERVASYARQYANQRIN 66
S++L CV++ + ++AQ+SPQD+V+AHNAAR+ V VGPV WDE VA++ARQYA R
Sbjct: 11 SVALVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAG 70
Query: 67 DCRLMHSGGP-YGENIAWGSP-DLSGTAAVRMWVDEKQFYDHGTNTCAAGKVCGHYTQVV 126
DCRL+HSG P YGEN+A+GS +L+G AV MWV E+ Y+ TNTCA GKVCGHYTQVV
Sbjct: 71 DCRLVHSGDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVV 130
Query: 127 WRNSVRIGCAKVRCTNGRGTFITCNYDPRGNFIGQRPY 163
WRNSVRIGCA+VRC NG FITCNY P GN+ GQRPY
Sbjct: 131 WRNSVRIGCARVRCNNG-AWFITCNYSPPGNYAGQRPY 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887491.1 | 1.4e-81 | 88.27 | pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_008455064.1 | 7.4e-80 | 86.59 | PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1... | [more] |
XP_023553946.1 | 1.4e-78 | 88.34 | pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022972506.1 | 2.4e-78 | 87.12 | pathogenesis-related protein PR-1 type-like [Cucurbita maxima] | [more] |
XP_022952868.1 | 4.1e-78 | 87.12 | pathogenesis-related protein 1-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
P35793 | 1.0e-55 | 60.98 | Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |
P33154 | 1.3e-55 | 63.87 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1... | [more] |
Q05968 | 1.7e-55 | 60.37 | Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |
P11670 | 3.0e-55 | 63.29 | Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... | [more] |
Q41359 | 6.6e-55 | 64.56 | Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1 | [more] |