Lag0014514 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014514
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pathogenesis-related protein 1
Location	chr12: 1561121 .. 1561609 (-)
RNA-Seq Expression	Lag0014514
Synteny	Lag0014514

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTCTTAAACTTATGGGTGTTTTTCAATTCTATCTTCTTCTTGTGAGCCTTTTGATCAAGTGTTCTTATGCTCAAAATTCAGCTCAAGACTACATCAACAGCCACAACTCAGCTAGATCTCAAGTGGGCGTTGGAAACATTGTATGGAACACAACTCTTGCTGCCTATGCTCAAACGTACGCCAACTCTAGGAAAGCAGATTGCCAATTGGTGCATTCCACAGGGCCTTATGGCGAGAACCTTGCAAAGGGCAACAATGGCTTCACTGGCACAGCTGCAGTGAACTTATGGGTTGCCGAAAAGCCTTACTATAGTTATAACAACAACGCCTGCGTCGGGGGCGACTGTCTCCATTACACGCAAGTCGTTTGGCAAACTTCGTCTCGTGTTGGCTGTGCGAGAGTTCAGTGCAACAATGGTTGGTGGTTTGTGTCTTGCAACTATGATCCTCCGGGCAACTGGGATGGGGAGTGGCCTTATTAG

mRNA sequence

ATGTGTTTTCTTAAACTTATGGGTGTTTTTCAATTCTATCTTCTTCTTGTGAGCCTTTTGATCAAGTGTTCTTATGCTCAAAATTCAGCTCAAGACTACATCAACAGCCACAACTCAGCTAGATCTCAAGTGGGCGTTGGAAACATTGTATGGAACACAACTCTTGCTGCCTATGCTCAAACGTACGCCAACTCTAGGAAAGCAGATTGCCAATTGGTGCATTCCACAGGGCCTTATGGCGAGAACCTTGCAAAGGGCAACAATGGCTTCACTGGCACAGCTGCAGTGAACTTATGGGTTGCCGAAAAGCCTTACTATAGTTATAACAACAACGCCTGCGTCGGGGGCGACTGTCTCCATTACACGCAAGTCGTTTGGCAAACTTCGTCTCGTGTTGGCTGTGCGAGAGTTCAGTGCAACAATGGTTGGTGGTTTGTGTCTTGCAACTATGATCCTCCGGGCAACTGGGATGGGGAGTGGCCTTATTAG

Coding sequence (CDS)

ATGTGTTTTCTTAAACTTATGGGTGTTTTTCAATTCTATCTTCTTCTTGTGAGCCTTTTGATCAAGTGTTCTTATGCTCAAAATTCAGCTCAAGACTACATCAACAGCCACAACTCAGCTAGATCTCAAGTGGGCGTTGGAAACATTGTATGGAACACAACTCTTGCTGCCTATGCTCAAACGTACGCCAACTCTAGGAAAGCAGATTGCCAATTGGTGCATTCCACAGGGCCTTATGGCGAGAACCTTGCAAAGGGCAACAATGGCTTCACTGGCACAGCTGCAGTGAACTTATGGGTTGCCGAAAAGCCTTACTATAGTTATAACAACAACGCCTGCGTCGGGGGCGACTGTCTCCATTACACGCAAGTCGTTTGGCAAACTTCGTCTCGTGTTGGCTGTGCGAGAGTTCAGTGCAACAATGGTTGGTGGTTTGTGTCTTGCAACTATGATCCTCCGGGCAACTGGGATGGGGAGTGGCCTTATTAG

Protein sequence

MCFLKLMGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSRKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVVWQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY

Homology

[Close]

BLAST of Lag0014514 vs. NCBI nr
Match: XP_038888711.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 313.9 bits (803), Expect = 8.0e-82
Identity = 144/162 (88.89%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 1   MCFLKLMGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQ 60
           MCFLKL  VFQ YLLL++LL+K SYAQNSAQDYIN HNSARS VGVGNIVWNTTLAAYAQ
Sbjct: 1   MCFLKLRSVFQLYLLLLTLLVKSSYAQNSAQDYINGHNSARSIVGVGNIVWNTTLAAYAQ 60

Query: 61  TYANSRKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLH 120
           TYANSRKADCQLVHS GPYGENLAKGNNGFTG+AAV LWV EKPYYSYNNNACVGG+CLH
Sbjct: 61  TYANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSYNNNACVGGECLH 120

Query: 121 YTQVVWQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           YTQVVWQ+S RVGCARVQCN+GW+FVSCNYDPPGNWDGEWPY
Sbjct: 121 YTQVVWQSSYRVGCARVQCNDGWYFVSCNYDPPGNWDGEWPY 162

[Close]

BLAST of Lag0014514 vs. NCBI nr
Match: XP_022148822.1 (pathogenesis-related leaf protein 6-like [Momordica charantia])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MCFLKLMGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQ 60
           M FLKL+G+FQ YLL+++LL+K S AQNSAQDYIN HNSARSQVGVGNI WNTTLAAYAQ
Sbjct: 1   MHFLKLIGLFQLYLLIMTLLVKSSNAQNSAQDYINGHNSARSQVGVGNITWNTTLAAYAQ 60

Query: 61  TYANSRKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLH 120
           TYANSRK DCQL+HS GPYGENLAKGNNGF+G+ AVNLWV EKPYYSY+NNAC GG+CLH
Sbjct: 61  TYANSRKGDCQLMHSNGPYGENLAKGNNGFSGSTAVNLWVNEKPYYSYSNNACNGGECLH 120

Query: 121 YTQVVWQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           YTQVVWQ+S RVGCARVQCN+GWWFVSCNYDPPGNW+GEWPY
Sbjct: 121 YTQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWEGEWPY 162

[Close]

BLAST of Lag0014514 vs. NCBI nr
Match: XP_022952873.1 (basic form of pathogenesis-related protein 1-like [Cucurbita moschata])

HSP 1 Score: 294.3 bits (752), Expect = 6.5e-76
Identity = 133/157 (84.71%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 6   LMGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANS 65
           +M +    LLL +LL+K S AQNSAQDYIN+HNSARS VGVGN+VWNTTLAAYAQTYANS
Sbjct: 1   MMTILTLILLLSTLLVKSSDAQNSAQDYINNHNSARSSVGVGNLVWNTTLAAYAQTYANS 60

Query: 66  RKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVV 125
           RK DCQLVHS GPYGENLAKGNNGFTGTAAV LWV EKPYYSYN NAC GG+CLHYTQVV
Sbjct: 61  RKGDCQLVHSNGPYGENLAKGNNGFTGTAAVKLWVDEKPYYSYNTNACAGGECLHYTQVV 120

Query: 126 WQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           WQ+S RVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY
Sbjct: 121 WQSSYRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 157

[Close]

BLAST of Lag0014514 vs. NCBI nr
Match: XP_023511428.1 (basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 133/156 (85.26%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 7   MGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSR 66
           M +    LLL +LL+K S AQNSAQDYIN+HNSARS VGVGN+VWNTTLAAYAQTYANSR
Sbjct: 1   MTILTLILLLSTLLVKSSDAQNSAQDYINNHNSARSAVGVGNMVWNTTLAAYAQTYANSR 60

Query: 67  KADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVVW 126
           K DCQLVHS GPYGENLAKGNNGFTGTAAV LWV EKPYYSYN NAC GG+CLHYTQVVW
Sbjct: 61  KGDCQLVHSNGPYGENLAKGNNGFTGTAAVKLWVDEKPYYSYNTNACAGGECLHYTQVVW 120

Query: 127 QTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           Q+S RVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY
Sbjct: 121 QSSYRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 156

[Close]

BLAST of Lag0014514 vs. NCBI nr
Match: XP_022972513.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 132/156 (84.62%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 7   MGVFQFYLLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSR 66
           M + +  LL+ +LL+K S AQNSAQDYIN+HNSARS VGVGN+VWNTTLAAYAQTYANSR
Sbjct: 1   MTILKLILLISTLLVKSSDAQNSAQDYINNHNSARSFVGVGNLVWNTTLAAYAQTYANSR 60

Query: 67  KADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVVW 126
           K DCQLVHS GPYGENLAKGNNGFTGTAAV LWV EKPYYSYN+NAC GG+CLHYTQVVW
Sbjct: 61  KGDCQLVHSNGPYGENLAKGNNGFTGTAAVKLWVDEKPYYSYNSNACAGGECLHYTQVVW 120

Query: 127 QTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           Q+S RVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY
Sbjct: 121 QSSYRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 156

[Close]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot
Match: Q04108 (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.4e-50
Identity = 96/161 (59.63%), Postives = 113/161 (70.19%), Query Frame = 0


Query: 7   MGVFQFYLLLVSLLIKCSY----AQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTY 66
           MG+F   LLL  L++   +    AQNS QDY+  HN AR+QVGVG + W+  LA+ AQ Y
Sbjct: 1   MGLFNISLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNY 60

Query: 67  ANSRKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGD-CLHY 126
           ANSR  DC L+HS    GENLAKG   FTG AAV LWV+E+P Y+Y  N CVGG  C HY
Sbjct: 61  ANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHY 120

Query: 127 TQVVWQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           TQVVW+ S R+GC R +CNNGWWF+SCNYDP GNW GE PY
Sbjct: 121 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159

[Close]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot
Match: P04284 (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum OX=4081 GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 6.4e-50
Identity = 95/161 (59.01%), Postives = 113/161 (70.19%), Query Frame = 0


Query: 7   MGVFQFYLLLVSLLIKCSY----AQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTY 66
           MG+F   LLL  L++   +    AQNS QDY+  HN AR+QVGVG + W+  LA+ AQ Y
Sbjct: 1   MGLFNISLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNY 60

Query: 67  ANSRKADCQLVHSTGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGG-DCLHY 126
           ANSR  DC L+HS    GENLAKG   FTG AAV LWV+E+P Y+Y  N CVGG  C HY
Sbjct: 61  ANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHY 120

Query: 127 TQVVWQTSSRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           TQVVW+ S R+GC R +CNNGWWF+SCNYDP GNW G+ PY
Sbjct: 121 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY 159

[Close]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot
Match: P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-49
Identity = 87/145 (60.00%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 18  SLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSRKADCQLVHSTG 77
           ++LI  S AQNS QDY+N HN+AR QVGVG + W+  LAAYAQ YAN R  DC ++HS G
Sbjct: 15  AILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHG 74

Query: 78  PYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVVWQTSSRVGCARV 137
           PYGENLA          AV +WV EK +Y YN+N+CVGG C HYTQVVW+ S R+GCARV
Sbjct: 75  PYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARV 134

Query: 138 QCNNGWWFVSCNYDPPGNWDGEWPY 163
           + NNGW+F++CNYDPPGN+ G+ P+
Sbjct: 135 RSNNGWFFITCNYDPPGNFIGQRPF 159

[Close]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot
Match: Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.9e-47
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 16  LVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSRKADCQLVHS 75
           LV  L+    AQ+S QDY+N+HN ARSQ+GVG + W+  LAAYA+ YAN  K DC+LVHS
Sbjct: 16  LVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHS 75

Query: 76  TGPYGENLAKGNNGFTGTAAVNLWVAEKPYYSYNNNACVGGDCLHYTQVVWQTSSRVGCA 135
            GPYGENLAK     +G AAVNLWV EK  Y+Y+ N C  G C HYTQVVW+ S R+GCA
Sbjct: 76  RGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHYTQVVWRNSVRLGCA 135

Query: 136 RVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           +V+CNNG   +SCNYDPPGN+  + PY
Sbjct: 136 KVRCNNGGTIISCNYDPPGNYANQKPY 161

[Close]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.2e-45
Identity = 88/151 (58.28%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 14  LLLVSLLIKCSYAQNSAQDYINSHNSARSQVGVGNIVWNTTLAAYAQTYANSRKADCQLV 73
           LLL  ++     AQNS QDY+++HN+AR+ VGV  + W+  +AAYAQ YA+   ADC LV
Sbjct: 18  LLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLV 77

Query: 74  HSTGPYGENLAKGNNGF-TGTAAVNLWVAEKPYYSYNNNACVGGD-CLHYTQVVWQTSSR 133
           HS G YGENLA+G+  F T   AV +WV EK YY +++N C  G  C HYTQVVW+ S R
Sbjct: 78  HSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 137

Query: 134 VGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 163
           VGCARVQCNNG + VSCNYDPPGN+ GE PY
Sbjct: 138 VGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168

The following BLAST results are available for this feature:

BLAST of Lag0014514 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888711.1	8.0e-82	88.89	basic form of pathogenesis-related protein 1-like [Benincasa hispida]	[more]
XP_022148822.1	2.4e-78	83.95	pathogenesis-related leaf protein 6-like [Momordica charantia]	[more]
XP_022952873.1	6.5e-76	84.71	basic form of pathogenesis-related protein 1-like [Cucurbita moschata]	[more]
XP_023511428.1	1.1e-75	85.26	basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972513.1	1.1e-75	84.62	basic form of pathogenesis-related protein 1-like [Cucurbita maxima]	[more]

BLAST of Lag0014514 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04108	6.4e-50	59.63	Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P04284	6.4e-50	59.01	Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum OX=4081 GN=PR1B1 PE=...	[more]
P11670	1.9e-49	60.00	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S...	[more]
Q9ZNS4	3.9e-47	59.86	Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1	[more]
P08299	6.2e-45	58.28	Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein-related	PRINTS	PR00837	V5TPXLIKE	coord: 95..108 score: 38.5 coord: 49..67 score: 39.78 coord: 118..134 score: 56.72 coord: 145..158 score: 52.26
IPR001283	Cysteine-rich secretory protein-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 13..162
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 28..158 e-value: 2.7E-54 score: 196.3
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 35..150 e-value: 4.3E-18 score: 66.3
IPR035940	CAP superfamily	GENE3D	3.40.33.10	CAP	coord: 27..162 e-value: 2.3E-41 score: 143.3
IPR035940	CAP superfamily	SUPERFAMILY	55797	PR-1-like	coord: 27..162
None	No IPR available	PANTHER	PTHR10334:SF443	CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN	coord: 13..162
None	No IPR available	CDD	cd05381	CAP_PR-1	coord: 30..162 e-value: 5.17186E-74 score: 215.961
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01010	CRISP_2	coord: 145..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014514.1	Lag0014514.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0005576	extracellular region