Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA
mRNA sequence
ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA
Coding sequence (CDS)
ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA
Protein sequence
MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN
Homology
BLAST of Lag0014509 vs. NCBI nr
Match:
XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 207.6 bits (527), Expect = 8.0e-50
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 0
Query: 1 MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
MA AN+L LCLL L + A I+ P A + P++++ AHNA+RA+VGI+PLHWN TL
Sbjct: 1 MAFANVLSSLCLLALTL--VLAPIS--PIEAKSYPKNYIAAHNAIRAEVGIEPLHWNATL 60
Query: 61 AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
AAYAQNYANTKIATCQM+HS GPYGEN+A+G++ MTAETAV LW +KK +Y S+T N
Sbjct: 61 AAYAQNYANTKIATCQMEHSGGPYGENLAEGYEVMTAETAVSLWADEKKHYDYNSNTCVN 120
Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
+ C H TQ+ WRNTKS+GCAQVKC N+WV +ICNY PP N
Sbjct: 121 DSSHCLHYTQLVWRNTKSIGCAQVKCQNNWVFLICNYYPPGN 158
BLAST of Lag0014509 vs. NCBI nr
Match:
XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 1 MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
M AN+L CLLG L + P +A + P++++ AHNA+RA+VG+ PLHWN+TL
Sbjct: 1 MGFANILSTFCLLGLTLTLASTA----PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTL 60
Query: 61 AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
AAYAQNYANTKIATCQM+HS GPYGEN+A+G++ MTAE AV LW +KK +Y S+T TN
Sbjct: 61 AAYAQNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVSLWADEKKHYDYNSNTCTN 120
Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
+ C H TQ+ WRNTKSVGCA+VKC N+WV +IC+Y PP N
Sbjct: 121 DASNCLHYTQLVWRNTKSVGCAEVKCQNNWVFLICSYYPPGN 158
BLAST of Lag0014509 vs. NCBI nr
Match:
XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus])
HSP 1 Score: 201.1 bits (510), Expect = 7.5e-48
Identity = 97/164 (59.15%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MASANLLFVLCLLG--ANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNT 60
M AN+L LCLLG L + P++A +SP++++ AHNAVRA VG++PLHWN+
Sbjct: 1 MGFANILSTLCLLGLTLTLTLTLTLASTAPSLAKSSPKNYIDAHNAVRAAVGVEPLHWNS 60
Query: 61 TLAAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTS 120
TLA YAQNYANTKIATCQM+HS GPYGEN+A+G + MTAETAV LW +KK +Y S+T
Sbjct: 61 TLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMTAETAVSLWADEKKHYDYNSNTC 120
Query: 121 TNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
+N+ C H TQ+ W NTKSVGCAQVKC N+WV +IC+Y PP N
Sbjct: 121 SNDPSNCLHYTQLVWSNTKSVGCAQVKCQNNWVFLICSYYPPGN 164
BLAST of Lag0014509 vs. NCBI nr
Match:
KAG6588723.1 (hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 192.6 bits (488), Expect = 2.7e-45
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 0
Query: 1 MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
MAS+N+L +CLLG L P A SP+D++ AHNA+RA+VG++PL WN TL
Sbjct: 1 MASSNILSAVCLLGIALTLTTLT----PTTAIISPKDYVDAHNAIRAEVGVEPLQWNETL 60
Query: 61 AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
A YAQNYA TKIA+C+M HS GPYGEN+A+G++ MTAE AVKLW +KK +Y S+T N
Sbjct: 61 ATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMTAENAVKLWVDEKKHYDYDSNTCVN 120
Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
+ C H TQ+ W+NTKSVGCA+V C N+WV ++CNY PP N
Sbjct: 121 DSSHCLHYTQLVWKNTKSVGCAEVLCHNNWVFLVCNYYPPGN 158
BLAST of Lag0014509 vs. NCBI nr
Match:
XP_022927709.1 (pathogenesis-related protein 1A-like [Cucurbita moschata])
HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 89/162 (54.94%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 1 MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
MAS+N+L +C LG L P A SP+D++ AHNA+RA+VG++PL WN TL
Sbjct: 11 MASSNILSAVCFLGIALTLTTLA----PTTAIISPKDYVDAHNAIRAEVGVEPLQWNETL 70
Query: 61 AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
A YAQNYA TKIA+C+M HS GPYGEN+A+G++ MTAE AVKLW +KK +Y S+T N
Sbjct: 71 ATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMTAENAVKLWVDEKKHYDYDSNTCVN 130
Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
+ C H TQ+ W+NT+SVGCA+V C N+WV ++CNY PP N
Sbjct: 131 DSSHCLHYTQLVWKNTESVGCAEVLCHNNWVFLVCNYYPPGN 168
BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match:
P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 8.1e-37
Identity = 70/132 (53.03%), Postives = 89/132 (67.42%), Query Frame = 0
Query: 31 ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
A NSPQD++ HNA R QVG+ P+ W+ LAAYAQNYAN +I C M HS GPYGEN+A
Sbjct: 23 AQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHGPYGENLAA 82
Query: 91 GFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDW 150
F + A AVK+W +K+F +Y S++ G CGH TQV WRN+ +GCA+V+ N W
Sbjct: 83 AFPQLNAAGAVKMWVDEKRFYDYNSNSCVG--GVCGHYTQVVWRNSVRLGCARVRSNNGW 142
Query: 151 VLVICNYDPPCN 163
+ CNYDPP N
Sbjct: 143 FFITCNYDPPGN 152
BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match:
Q08697 (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 0
Query: 31 ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
A ++F+ AHNA R +VG+ P+ W+ LAAYAQNYAN + C M HS GPYGEN+A
Sbjct: 21 AQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMIHSDGPYGENLAA 80
Query: 91 GFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDW 150
F + A AVK+W +K++ +Y S+T K CGH TQV WR + +GCA+V+C + W
Sbjct: 81 AFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGK-VCGHYTQVVWRKSVRLGCARVRCNSGW 140
Query: 151 VLVICNYDPPCN 163
V + CNYDPP N
Sbjct: 141 VFITCNYDPPGN 151
BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match:
Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 6.0e-32
Identity = 67/154 (43.51%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 9 VLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYA 68
+L +L A + ++ P A +S QD++ AHN R+Q+G+ P+ W+ LAAYA+NYA
Sbjct: 9 ILIILAALVGALVV-----PLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYA 68
Query: 69 NTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQ 128
N C++ HS+GPYGEN+AK ++ AV LW +K NY ++T G CGH
Sbjct: 69 NQLKGDCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTC---NGVCGHY 128
Query: 129 TQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
TQV WRN+ +GCA+V+C N ++ CNYDPP N
Sbjct: 129 TQVVWRNSVRLGCAKVRCNNGGTIISCNYDPPGN 154
BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match:
P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0
Query: 31 ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
A NS QD++ AHN RA VG++PL W+ +AAYAQNYA+ A C + HS G YGEN+A+
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAE 89
Query: 91 GFKG-MTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPND 150
G MTA AV++W +K++ ++ S+T + CGH TQV WRN+ VGCA+V+C N
Sbjct: 90 GSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQ-VCGHYTQVVWRNSVRVGCARVQCNNG 149
Query: 151 WVLVICNYDPPCN 163
+V CNYDPP N
Sbjct: 150 GYVVSCNYDPPGN 161
BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match:
P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0
Query: 31 ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
A NS QD++ AHN RA VG++PL W+ +AAYAQNY + A C + HS G YGEN+A+
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSHGQYGENLAQ 89
Query: 91 GFKG-MTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPND 150
G MTA AV++W +K++ ++ S+T + CGH TQV WRN+ VGCA+VKC N
Sbjct: 90 GSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQ-VCGHYTQVVWRNSVRVGCARVKCNNG 149
Query: 151 WVLVICNYDPPCN 163
+V CNYDPP N
Sbjct: 150 GYVVSCNYDPPGN 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038888921.1 | 8.0e-50 | 61.73 | basic form of pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_008455069.1 | 1.5e-48 | 58.64 | PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA... | [more] |
XP_004137080.2 | 7.5e-48 | 59.15 | pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical prote... | [more] |
KAG6588723.1 | 2.7e-45 | 56.17 | hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022927709.1 | 2.3e-44 | 54.94 | pathogenesis-related protein 1A-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
P11670 | 8.1e-37 | 53.03 | Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... | [more] |
Q08697 | 1.2e-32 | 49.24 | Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | [more] |
Q9ZNS4 | 6.0e-32 | 43.51 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1 | [more] |
P08299 | 7.8e-32 | 50.38 | Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
P07053 | 7.8e-32 | 50.38 | Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | [more] |