Lag0014509 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014509
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionpathogenesis-related protein-1-like
Locationchr12: 1535436 .. 1535924 (+)
RNA-Seq ExpressionLag0014509
SyntenyLag0014509
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA

mRNA sequence

ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA

Coding sequence (CDS)

ATGGCATCTGCCAACCTTCTCTTCGTCCTTTGCTTGTTGGGGGCTAACCTTAACTCTATAGCTGCCAAGATCAACAAATTCCCCGCCGTGGCCAACAACAGCCCACAGGACTTCATGGTCGCCCACAACGCTGTCCGTGCGCAGGTTGGCATTCAACCCCTCCATTGGAACACCACCTTGGCTGCCTATGCTCAGAATTACGCCAACACGAAGATTGCCACTTGTCAAATGGATCACTCCAAAGGACCCTACGGCGAAAACGTAGCGAAGGGATTTAAAGGGATGACGGCGGAGACGGCGGTGAAACTCTGGACTGCCAAGAAGAAGTTCATCAACTACGGTTCCAGCACGAGCACCAACGAGAAGGGCCGTTGTGGCCATCAGACGCAGGTTGAGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTCAAGTGCCCAAACGATTGGGTTCTTGTCATCTGCAACTATGATCCTCCATGCAACTAA

Protein sequence

MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN
Homology
BLAST of Lag0014509 vs. NCBI nr
Match: XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 8.0e-50
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 0

Query: 1   MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
           MA AN+L  LCLL   L  + A I+  P  A + P++++ AHNA+RA+VGI+PLHWN TL
Sbjct: 1   MAFANVLSSLCLLALTL--VLAPIS--PIEAKSYPKNYIAAHNAIRAEVGIEPLHWNATL 60

Query: 61  AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
           AAYAQNYANTKIATCQM+HS GPYGEN+A+G++ MTAETAV LW  +KK  +Y S+T  N
Sbjct: 61  AAYAQNYANTKIATCQMEHSGGPYGENLAEGYEVMTAETAVSLWADEKKHYDYNSNTCVN 120

Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           +   C H TQ+ WRNTKS+GCAQVKC N+WV +ICNY PP N
Sbjct: 121 DSSHCLHYTQLVWRNTKSIGCAQVKCQNNWVFLICNYYPPGN 158

BLAST of Lag0014509 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = 0

Query: 1   MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
           M  AN+L   CLLG  L   +      P +A + P++++ AHNA+RA+VG+ PLHWN+TL
Sbjct: 1   MGFANILSTFCLLGLTLTLASTA----PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTL 60

Query: 61  AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
           AAYAQNYANTKIATCQM+HS GPYGEN+A+G++ MTAE AV LW  +KK  +Y S+T TN
Sbjct: 61  AAYAQNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVSLWADEKKHYDYNSNTCTN 120

Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           +   C H TQ+ WRNTKSVGCA+VKC N+WV +IC+Y PP N
Sbjct: 121 DASNCLHYTQLVWRNTKSVGCAEVKCQNNWVFLICSYYPPGN 158

BLAST of Lag0014509 vs. NCBI nr
Match: XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 7.5e-48
Identity = 97/164 (59.15%), Postives = 122/164 (74.39%), Query Frame = 0

Query: 1   MASANLLFVLCLLG--ANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNT 60
           M  AN+L  LCLLG    L       +  P++A +SP++++ AHNAVRA VG++PLHWN+
Sbjct: 1   MGFANILSTLCLLGLTLTLTLTLTLASTAPSLAKSSPKNYIDAHNAVRAAVGVEPLHWNS 60

Query: 61  TLAAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTS 120
           TLA YAQNYANTKIATCQM+HS GPYGEN+A+G + MTAETAV LW  +KK  +Y S+T 
Sbjct: 61  TLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMTAETAVSLWADEKKHYDYNSNTC 120

Query: 121 TNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           +N+   C H TQ+ W NTKSVGCAQVKC N+WV +IC+Y PP N
Sbjct: 121 SNDPSNCLHYTQLVWSNTKSVGCAQVKCQNNWVFLICSYYPPGN 164

BLAST of Lag0014509 vs. NCBI nr
Match: KAG6588723.1 (hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-45
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 0

Query: 1   MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
           MAS+N+L  +CLLG  L          P  A  SP+D++ AHNA+RA+VG++PL WN TL
Sbjct: 1   MASSNILSAVCLLGIALTLTTLT----PTTAIISPKDYVDAHNAIRAEVGVEPLQWNETL 60

Query: 61  AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
           A YAQNYA TKIA+C+M HS GPYGEN+A+G++ MTAE AVKLW  +KK  +Y S+T  N
Sbjct: 61  ATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMTAENAVKLWVDEKKHYDYDSNTCVN 120

Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           +   C H TQ+ W+NTKSVGCA+V C N+WV ++CNY PP N
Sbjct: 121 DSSHCLHYTQLVWKNTKSVGCAEVLCHNNWVFLVCNYYPPGN 158

BLAST of Lag0014509 vs. NCBI nr
Match: XP_022927709.1 (pathogenesis-related protein 1A-like [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 89/162 (54.94%), Postives = 116/162 (71.60%), Query Frame = 0

Query: 1   MASANLLFVLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTL 60
           MAS+N+L  +C LG  L          P  A  SP+D++ AHNA+RA+VG++PL WN TL
Sbjct: 11  MASSNILSAVCFLGIALTLTTLA----PTTAIISPKDYVDAHNAIRAEVGVEPLQWNETL 70

Query: 61  AAYAQNYANTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTN 120
           A YAQNYA TKIA+C+M HS GPYGEN+A+G++ MTAE AVKLW  +KK  +Y S+T  N
Sbjct: 71  ATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMTAENAVKLWVDEKKHYDYDSNTCVN 130

Query: 121 EKGRCGHQTQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           +   C H TQ+ W+NT+SVGCA+V C N+WV ++CNY PP N
Sbjct: 131 DSSHCLHYTQLVWKNTESVGCAEVLCHNNWVFLVCNYYPPGN 168

BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match: P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-37
Identity = 70/132 (53.03%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 31  ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
           A NSPQD++  HNA R QVG+ P+ W+  LAAYAQNYAN +I  C M HS GPYGEN+A 
Sbjct: 23  AQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHGPYGENLAA 82

Query: 91  GFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDW 150
            F  + A  AVK+W  +K+F +Y S++     G CGH TQV WRN+  +GCA+V+  N W
Sbjct: 83  AFPQLNAAGAVKMWVDEKRFYDYNSNSCVG--GVCGHYTQVVWRNSVRLGCARVRSNNGW 142

Query: 151 VLVICNYDPPCN 163
             + CNYDPP N
Sbjct: 143 FFITCNYDPPGN 152

BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match: Q08697 (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 0

Query: 31  ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
           A    ++F+ AHNA R +VG+ P+ W+  LAAYAQNYAN +   C M HS GPYGEN+A 
Sbjct: 21  AQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMIHSDGPYGENLAA 80

Query: 91  GFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPNDW 150
            F  + A  AVK+W  +K++ +Y S+T    K  CGH TQV WR +  +GCA+V+C + W
Sbjct: 81  AFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGK-VCGHYTQVVWRKSVRLGCARVRCNSGW 140

Query: 151 VLVICNYDPPCN 163
           V + CNYDPP N
Sbjct: 141 VFITCNYDPPGN 151

BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match: Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.0e-32
Identity = 67/154 (43.51%), Postives = 96/154 (62.34%), Query Frame = 0

Query: 9   VLCLLGANLNSIAAKINKFPAVANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYA 68
           +L +L A + ++       P  A +S QD++ AHN  R+Q+G+ P+ W+  LAAYA+NYA
Sbjct: 9   ILIILAALVGALVV-----PLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYA 68

Query: 69  NTKIATCQMDHSKGPYGENVAKGFKGMTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQ 128
           N     C++ HS+GPYGEN+AK    ++   AV LW  +K   NY ++T     G CGH 
Sbjct: 69  NQLKGDCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTC---NGVCGHY 128

Query: 129 TQVEWRNTKSVGCAQVKCPNDWVLVICNYDPPCN 163
           TQV WRN+  +GCA+V+C N   ++ CNYDPP N
Sbjct: 129 TQVVWRNSVRLGCAKVRCNNGGTIISCNYDPPGN 154

BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 31  ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
           A NS QD++ AHN  RA VG++PL W+  +AAYAQNYA+   A C + HS G YGEN+A+
Sbjct: 30  AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAE 89

Query: 91  GFKG-MTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPND 150
           G    MTA  AV++W  +K++ ++ S+T    +  CGH TQV WRN+  VGCA+V+C N 
Sbjct: 90  GSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQ-VCGHYTQVVWRNSVRVGCARVQCNNG 149

Query: 151 WVLVICNYDPPCN 163
             +V CNYDPP N
Sbjct: 150 GYVVSCNYDPPGN 161

BLAST of Lag0014509 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0

Query: 31  ANNSPQDFMVAHNAVRAQVGIQPLHWNTTLAAYAQNYANTKIATCQMDHSKGPYGENVAK 90
           A NS QD++ AHN  RA VG++PL W+  +AAYAQNY +   A C + HS G YGEN+A+
Sbjct: 30  AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSHGQYGENLAQ 89

Query: 91  GFKG-MTAETAVKLWTAKKKFINYGSSTSTNEKGRCGHQTQVEWRNTKSVGCAQVKCPND 150
           G    MTA  AV++W  +K++ ++ S+T    +  CGH TQV WRN+  VGCA+VKC N 
Sbjct: 90  GSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQ-VCGHYTQVVWRNSVRVGCARVKCNNG 149

Query: 151 WVLVICNYDPPCN 163
             +V CNYDPP N
Sbjct: 150 GYVVSCNYDPPGN 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888921.18.0e-5061.73basic form of pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_008455069.11.5e-4858.64PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA... [more]
XP_004137080.27.5e-4859.15pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical prote... [more]
KAG6588723.12.7e-4556.17hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022927709.12.3e-4454.94pathogenesis-related protein 1A-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
P116708.1e-3753.03Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... [more]
Q086971.2e-3249.24Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
Q9ZNS46.0e-3243.51Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1[more]
P082997.8e-3250.38Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1[more]
P070537.8e-3250.38Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein-relatedPRINTSPR00837V5TPXLIKEcoord: 152..162
score: 38.12
coord: 125..141
score: 54.92
coord: 100..113
score: 29.02
coord: 54..72
score: 41.39
IPR001283Cysteine-rich secretory protein-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 27..162
IPR014044CAP domainSMARTSM00198SCP_3coord: 33..162
e-value: 6.0E-36
score: 135.4
IPR014044CAP domainPFAMPF00188CAPcoord: 41..157
e-value: 1.9E-19
score: 70.7
IPR035940CAP superfamilyGENE3D3.40.33.10CAPcoord: 32..162
e-value: 1.0E-34
score: 121.8
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 32..161
NoneNo IPR availablePANTHERPTHR10334:SF488PATHOGENESIS-RELATED PROTEIN 1coord: 27..162
NoneNo IPR availableCDDcd05381CAP_PR-1coord: 35..162
e-value: 3.0413E-59
score: 178.596

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014509.1Lag0014509.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005615 extracellular space