Lag0014506 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014506
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionpathogenesis-related gene 1
Locationchr12: 1510068 .. 1510550 (+)
RNA-Seq ExpressionLag0014506
SyntenyLag0014506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA

mRNA sequence

ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA

Coding sequence (CDS)

ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA

Protein sequence

MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY
Homology
BLAST of Lag0014506 vs. NCBI nr
Match: XP_022988983.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 5.3e-86
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0

Query: 1   MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
           MA LANLLSFI LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1   MALLANLLSFIALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60

Query: 61  ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
           ANKKIGTCE+QHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHR NRCVGDEC HYT
Sbjct: 61  ANKKIGTCEMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYT 120

Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           QVVWRNTKHVGCARVKC NNWIFVICNYDPPGNY GQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICNYDPPGNYAGQLPY 160

BLAST of Lag0014506 vs. NCBI nr
Match: XP_023531814.1 (basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 149/160 (93.12%), Postives = 153/160 (95.62%), Query Frame = 0

Query: 1   MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
           MA LANLLSFI LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1   MALLANLLSFIALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60

Query: 61  ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
           ANKKIGTCE+QHSYGPYGENLAEGY EMTAVEAVNFWVSEKKYYDHR NRC+GDEC HYT
Sbjct: 61  ANKKIGTCEMQHSYGPYGENLAEGYREMTAVEAVNFWVSEKKYYDHRLNRCIGDECGHYT 120

Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           QVVWRNTKHVGCARVKC NNWIFVICNYDPPGNYVGQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICNYDPPGNYVGQLPY 160

BLAST of Lag0014506 vs. NCBI nr
Match: XP_038888600.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 150/158 (94.94%), Postives = 154/158 (97.47%), Query Frame = 0

Query: 4   LANLLSFITLMGLI-LAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYAN 63
           L  LLSFITLMG+I LAPITLAQNSHQDFVNAHNAARA+VGVGPVSWNYTLAAYAQTYAN
Sbjct: 3   LLKLLSFITLMGIITLAPITLAQNSHQDFVNAHNAARAKVGVGPVSWNYTLAAYAQTYAN 62

Query: 64  KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQV 123
           KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKK+YDHRSNRC+GDECRHYTQV
Sbjct: 63  KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKFYDHRSNRCIGDECRHYTQV 122

Query: 124 VWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           VWR TKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY
Sbjct: 123 VWRGTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 160

BLAST of Lag0014506 vs. NCBI nr
Match: XP_022927847.1 (basic form of pathogenesis-related protein 1-like [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 148/160 (92.50%), Postives = 154/160 (96.25%), Query Frame = 0

Query: 1   MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
           MA LANLLSF+ LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1   MALLANLLSFLALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60

Query: 61  ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
           ANKKIGTC++QHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHR NRCVGDEC HYT
Sbjct: 61  ANKKIGTCKMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYT 120

Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           QVVWRNTKHVGCARVKC NNWIFVIC+YDPPGNYVGQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICSYDPPGNYVGQLPY 160

BLAST of Lag0014506 vs. NCBI nr
Match: XP_022158625.1 (basic form of pathogenesis-related protein 1-like [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 4.5e-85
Identity = 147/157 (93.63%), Postives = 153/157 (97.45%), Query Frame = 0

Query: 4   LANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK 63
           LANLLS ITL+G+ LAP+T+AQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK
Sbjct: 6   LANLLSAITLLGVTLAPLTMAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK 65

Query: 64  KIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV 123
           KIGTCELQHSYGPYGENL+EGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV
Sbjct: 66  KIGTCELQHSYGPYGENLSEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV 125

Query: 124 WRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           WR+TKHVGCARVKCHNNWIFVICNYDPPGNY GQ PY
Sbjct: 126 WRDTKHVGCARVKCHNNWIFVICNYDPPGNYQGQFPY 162

BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match: P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.7e-51
Identity = 88/151 (58.28%), Postives = 113/151 (74.83%), Query Frame = 0

Query: 10  FITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCE 69
           FIT    IL   + AQNS QD++N HNAAR +VGVGP++W+  LAAYAQ YAN++IG C 
Sbjct: 11  FITF--AILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCG 70

Query: 70  LQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRNTKH 129
           + HS+GPYGENLA  + ++ A  AV  WV EK++YD+ SN CVG  C HYTQVVWRN+  
Sbjct: 71  MIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVR 130

Query: 130 VGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           +GCARV+ +N W F+ CNYDPPGN++GQ P+
Sbjct: 131 LGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159

BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 88/150 (58.67%), Postives = 109/150 (72.67%), Query Frame = 0

Query: 13  LMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQH 72
           L+ LI++  + AQNS QD+++AHN ARA VGV P++W+  +AAYAQ Y ++    C L H
Sbjct: 19  LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVH 78

Query: 73  SYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVWRNTKHV 132
           S+G YGENLA+G G+ MTA +AV  WV EK+YYDH SN C  G  C HYTQVVWRN+  V
Sbjct: 79  SHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRV 138

Query: 133 GCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           GCARVKC+N    V CNYDPPGN +GQ PY
Sbjct: 139 GCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-46
Identity = 90/156 (57.69%), Postives = 111/156 (71.15%), Query Frame = 0

Query: 7   LLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIG 66
           LL    L+ L+++    AQNS QD+++AHN ARA VGV P++W+  +AAYAQ YA++   
Sbjct: 13  LLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAA 72

Query: 67  TCELQHSYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVW 126
            C L HS+G YGENLAEG G+ MTA +AV  WV EK+YYDH SN C  G  C HYTQVVW
Sbjct: 73  DCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVW 132

Query: 127 RNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           RN+  VGCARV+C+N    V CNYDPPGNY G+ PY
Sbjct: 133 RNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168

BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match: Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-45
Identity = 83/154 (53.90%), Postives = 111/154 (72.08%), Query Frame = 0

Query: 7   LLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIG 66
           L+    L+G ++ P+  AQ+S QD+VNAHN AR+++GVGP+ W+  LAAYA+ YAN+  G
Sbjct: 10  LIILAALVGALVVPLK-AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKG 69

Query: 67  TCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRN 126
            C L HS GPYGENLA+  G+++ V AVN WV+EK  Y++ +N C G  C HYTQVVWRN
Sbjct: 70  DCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTCNG-VCGHYTQVVWRN 129

Query: 127 TKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           +  +GCA+V+C+N    + CNYDPPGNY  Q PY
Sbjct: 130 SVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match: P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-44
Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 0

Query: 13  LMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQH 72
           L+ LI++    AQNS QD+++AHN ARA VGV P++W+  +AAYAQ YA++    C L H
Sbjct: 19  LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78

Query: 73  SYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVWRNTKHV 132
           S+G YGENLA G G+ +TA +AV  WV+EK+YY H SN C  G  C HYTQVVWRN+  V
Sbjct: 79  SHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRV 138

Query: 133 GCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
           GCARV+C+N    V CNYDPPGN +G+ PY
Sbjct: 139 GCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022988983.15.3e-8693.75basic form of pathogenesis-related protein 1-like [Cucurbita maxima][more]
XP_023531814.12.0e-8593.13basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_038888600.12.6e-8594.94basic form of pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_022927847.13.4e-8592.50basic form of pathogenesis-related protein 1-like [Cucurbita moschata][more]
XP_022158625.14.5e-8593.63basic form of pathogenesis-related protein 1-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
P116709.7e-5158.28Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... [more]
P070531.1e-4658.67Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
P082991.5e-4657.69Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1[more]
Q9ZNS42.1e-4553.90Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1[more]
P090422.3e-4456.67Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein-relatedPRINTSPR00837V5TPXLIKEcoord: 93..106
score: 39.77
coord: 116..132
score: 58.45
coord: 143..156
score: 55.71
coord: 47..65
score: 39.28
IPR001283Cysteine-rich secretory protein-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 21..160
IPR014044CAP domainSMARTSM00198SCP_3coord: 26..156
e-value: 5.4E-54
score: 195.4
IPR014044CAP domainPFAMPF00188CAPcoord: 32..148
e-value: 2.2E-22
score: 80.2
IPR035940CAP superfamilyGENE3D3.40.33.10CAPcoord: 25..160
e-value: 2.7E-44
score: 152.8
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 16..160
NoneNo IPR availablePANTHERPTHR10334:SF488PATHOGENESIS-RELATED PROTEIN 1coord: 21..160
NoneNo IPR availableCDDcd05381CAP_PR-1coord: 29..160
e-value: 5.84268E-81
score: 233.68
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01009CRISP_1coord: 117..127
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01010CRISP_2coord: 143..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014506.1Lag0014506.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005615 extracellular space
cellular_component GO:0005576 extracellular region