Lag0014480 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014480
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr12: 1233867 .. 1237336 (-)
RNA-Seq ExpressionLag0014480
SyntenyLag0014480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTGGATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATTTTGAACTACGTTATGACTTGATCCTTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAGAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGGTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCTAAGTTCGAAGGTTCTCACGTCGCTTCGCTGTAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGGTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTTTCACGCACTTCGCTACAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAATTCCTTCCTCCAAATTTGAAGGTTCTCACGCGCTTCGATACAGTTCCTTCCTCCCGAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTTCGAAGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCGAGTTCGAAGGTTCTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTTCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCAAGTGCGAAGGTTCTCTCATGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTACTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTTGCTGCAGTTCCTTCCTCCAAGTTTAAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTATTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCTGTTGCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTTAAAAAAATGCTTGATATCAAACCACAAAAAAAAAAGAAAGAAAGACAATAAAAGTGTTAAAAAAACGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGGCTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGATCGTTGAAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGCGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

mRNA sequence

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTGGATCTCGTCACGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGGTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGTAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGGTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTTTCACGCACTTCGCTACAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAATTCCTTCCTCCAAATTTGAAGGTTCTCACGCGCTTCGATACAGTTCCTTCCTCCCGAAGTTCGAAGTTCCTTCCTCCGAGTTCGAAGGTTCTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTTCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCAAGTGCGAAGGTTCTCTCATGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTACTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTTGCTGCAGTTCCTTCCTCCAAGTTTAAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTATTTTGAAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGAAACTACAGTCATCAAAGTGGCTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGATCGTTGAAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGCGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

Coding sequence (CDS)

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTGGATCTCGTCACGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGGTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGTAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGGTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTTTCACGCACTTCGCTACAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAATTCCTTCCTCCAAATTTGAAGGTTCTCACGCGCTTCGATACAGTTCCTTCCTCCCGAAGTTCGAAGTTCCTTCCTCCGAGTTCGAAGGTTCTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTTCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCAAGTGCGAAGGTTCTCTCATGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTACTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTTGCTGCAGTTCCTTCCTCCAAGTTTAAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAATTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTATTTTGAAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGAAACTACAGTCATCAAAGTGGCTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGATCGTTGAAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGCGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

Protein sequence

MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSGSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSPKFEGSHALRCSSFPPSSKVLTSLRCSSFLQVRRFSRRFAVVPSSKFEGSHIASLRSRASLRSFLQVRRFSRASLCNSFPKFEGSHALRAVPSSNSKVLTRFGEVPSSKSEGFHALRYSSFPQVRRFSRASLQFLPHSSKVLTCFAAVPSPKFEGSHVASLQFLPPNLKVLTRFDTVPSSRSSKFLPPSSKVLAAQFLPPSSKVLMRFVATFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKALLSTASSPSSKALLSVATFLQVRRFSHALLQFLPPSSKVPSRASLAPTPSSKALLSTAPSPSSKALLSVATFLQVRRFSHALLQFLPPSSKVLSRVAAVPSSKFKGSLTRFTRSFSKFEGASLRCYLPPSSKVLSRVLQFLPPSSKVPSRASLAPSPSSKALLSVATFLQVRRFSHALLQFLPPNLKVPSRASLAPSPSSKALLSTAPSPSSKALLSTATSPSSKALLSTAPSPSSKALLSATPSPSSKALLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPILKLTASASLHLQKLTVDNFTSYSKVDGNYSHQSGWSRQVVKSLQLNLMTIVEGESGLVTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGAHEGESGDYPCRLLRSPNKMGTGSSRSYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGSSRSASL
Homology
[Close]
BLAST of Lag0014480 vs. NCBI nr
Match: KAA0056218.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-12
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E N D K+H+
Sbjct: 576 STYTRTSAFKRLSISTSKKHRPSTFVFDRLKMTNDQQQREMKTLKAKPFHEENDDNKIHN 635

Query: 62  GSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSP 121
                  +  ++++         +EPKLH APSP ELKS   +  P  +   +FA+  SP
Sbjct: 636 -------RVPSRMKRKLSVDINIEEPKLHGAPSPQELKSS-TIASPRRRRWYKFAST-SP 694

Query: 122 KFEGSHAL 130
             EG+ +L
Sbjct: 696 NDEGARSL 694

[Close]
BLAST of Lag0014480 vs. NCBI nr
Match: CAE6523816.1 (Tir4p [Saccharomyces cerevisiae PE-2] >CAF1605517.1 Tir4p [Saccharomyces cerevisiae PE-2])

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-11
Identity = 179/587 (30.49%), Postives = 282/587 (48.04%), Query Frame = 0 

Query: 81   SSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSPKFEGSHALRCSSFPPSSKV 140
            SS S+      APS  E+ S   V P SS+V +   A  S     S  +  S  P SS+V
Sbjct: 958  SSSSEVASSSVAPSSSEVVSS-SVAPSSSEVVSSSVAPSS-----SEVVSSSVAPSSSEV 1017

Query: 141  LTSLRCSSFLQVRRFSRRFAVVP-SSKFEGSHIASLRSRASLRSFLQVRRFSRASLCNSF 200
            ++S   SS  +V   S    V P SS+   S +AS  S  +  S   V   S   + +S 
Sbjct: 1018 VSSSVASSSSEVASSS----VAPSSSEVVSSSVASSSSEVASSS---VAPSSSEVVSSSV 1077

Query: 201  PKFEGSHALRAVPSSNSKVLTRFGEVPSSKSEGFHALRYSSFPQVRRFSRASLQFLPHSS 260
                      +V  S+S+V++    V  S SE   +   SS  +V     AS    P SS
Sbjct: 1078 APSSSEVVSSSVAPSSSEVVS--SSVAPSSSEVVSSSVASSSSEV-----ASSSVAPSSS 1137

Query: 261  KVLTCFAAVPSPKFEGSHVASLQFLPPNLKVLTRFDTVPSSR---SSKFLPPSSKVLAAQ 320
            +V++   A  S     S VAS    P + +V++     PSS    SS   P SS+V+++ 
Sbjct: 1138 EVVSSSVASSS-----SEVASSSVAPSSSEVVSS-SVAPSSSEVVSSSVAPSSSEVVSSS 1197

Query: 321  FLPPSSKVLMRFVATFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKALLSTASSPSS 380
              P SS+V+   VA+                 SS   + +S+APS S     S ASS S 
Sbjct: 1198 VAPSSSEVVSSSVAS-----------------SSSEVASSSVAPSSSEVVSSSVASSSSE 1257

Query: 381  KALLSVATFLQVRRFSHALLQFLPPSSKVPSRASLAPTPSSKALLSTAPSPSSKALLSVA 440
             A  SVA        S  +   + PSS     +S+AP+ S     S APS S     SVA
Sbjct: 1258 VASSSVAP-----SSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSVA 1317

Query: 441  TFLQVRRFSHALLQFLPPSSKVLSRVAAVPSSKFKGSLTRFTRSFSKFEGASLRCYLPPS 500
            +         A     P SS+V+S  ++V SS  + + +    S S+   +S+    P S
Sbjct: 1318 S----SSSEVASSSVAPSSSEVVS--SSVASSSSEVASSSVAPSSSEVVSSSV---APSS 1377

Query: 501  SKVLSRVLQFLPPSSKVPSRASLAPSPSSKALLSVA-TFLQVRRFSHALLQFLPPNLKVP 560
            S+V+S      P SS+V S +S+APS S     SVA +  +V   S A       +  V 
Sbjct: 1378 SEVVSS--SVAPSSSEVVS-SSVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVA 1437

Query: 561  SR----ASLAPSPSSKALLSTAPSPSSKALLSTATSPSSKALLSTAPSPSSKALLSATPS 620
            S     AS + +PSS  ++S++ +PSS  ++S++ +PSS  ++S++ +PSS  ++S++ +
Sbjct: 1438 SSSSEVASSSVAPSSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSVA 1484

Query: 621  PSSKALLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPI 659
            PSS  ++S++ +PSS  ++S++ +PSS  ++S++ +PSS  ++S+ +
Sbjct: 1498 PSSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSVAPSSSEVVSSSV 1484

[Close]
BLAST of Lag0014480 vs. NCBI nr
Match: KAA0065966.1 (hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-11
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS
Sbjct: 105 STYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKAKLFHEENGDDKIHS 164

Query: 62  GSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSP 121
                  +  ++++        +++PKLH APSP ELKS     PP +     F+   SP
Sbjct: 165 -------RVPSRMKRKLSVDINTEKPKLHGAPSPQELKS----FPPPN-----FSISLSP 219

Query: 122 KFEGSHALRCSSFPPS 138
           K      L+  S PPS
Sbjct: 225 K-----VLQSCSRPPS 219

[Close]
BLAST of Lag0014480 vs. NCBI nr
Match: TYK26726.1 (hypothetical protein E5676_scaffold124G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-08
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEVNSDKKLH 61
           STS + SAF+RLS+ST KK R STS FD LK+ +D+ +R+M  L+ KL ++E N D K+H
Sbjct: 13  STSAQTSAFKRLSISTLKKDRPSTSTFDHLKMISDRHEREMKTLKAKLSYEENNDDGKIH 72

Query: 62  SGSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPS 121
           S     +   M +  +F      ++EPKLH APSP ELK        S+K+ +R   +  
Sbjct: 73  S----RVPSCMKRKLSFDIN---TEEPKLHGAPSPQELK--------SAKISSRLIQMLL 124

Query: 122 PKFEGSH 128
            + +G H
Sbjct: 133 HQLQGLH 124

[Close]
BLAST of Lag0014480 vs. NCBI nr
Match: KAA0050345.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK03559.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-07
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 106 STYTRTSAFKRLSISTSKKDRPSTSSFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHS 165

[Close]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match: A0A5A7UM99 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold731G00010 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.7e-13
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E N D K+H+
Sbjct: 576 STYTRTSAFKRLSISTSKKHRPSTFVFDRLKMTNDQQQREMKTLKAKPFHEENDDNKIHN 635

Query: 62  GSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSP 121
                  +  ++++         +EPKLH APSP ELKS   +  P  +   +FA+  SP
Sbjct: 636 -------RVPSRMKRKLSVDINIEEPKLHGAPSPQELKSS-TIASPRRRRWYKFAST-SP 694

Query: 122 KFEGSHAL 130
             EG+ +L
Sbjct: 696 NDEGARSL 694

[Close]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match: A0A5A7VHY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00430 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-11
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS
Sbjct: 105 STYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKAKLFHEENGDDKIHS 164

Query: 62  GSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPSP 121
                  +  ++++        +++PKLH APSP ELKS     PP +     F+   SP
Sbjct: 165 -------RVPSRMKRKLSVDINTEKPKLHGAPSPQELKS----FPPPN-----FSISLSP 219

Query: 122 KFEGSHALRCSSFPPS 138
           K      L+  S PPS
Sbjct: 225 K-----VLQSCSRPPS 219

[Close]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match: A0A5D3DSN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00100 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-08
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEVNSDKKLH 61
           STS + SAF+RLS+ST KK R STS FD LK+ +D+ +R+M  L+ KL ++E N D K+H
Sbjct: 13  STSAQTSAFKRLSISTLKKDRPSTSTFDHLKMISDRHEREMKTLKAKLSYEENNDDGKIH 72

Query: 62  SGSRHDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSEWKVLPPSSKVPTRFAAVPS 121
           S     +   M +  +F      ++EPKLH APSP ELK        S+K+ +R   +  
Sbjct: 73  S----RVPSCMKRKLSFDIN---TEEPKLHGAPSPQELK--------SAKISSRLIQMLL 124

Query: 122 PKFEGSH 128
            + +G H
Sbjct: 133 HQLQGLH 124

[Close]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match: A0A5A7U9R6 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00560 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-08
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 106 STYTRTSAFKRLSISTSKKDRPSTSSFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHS 165

[Close]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match: A0A5D3DZF3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002920 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-08
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 5   TRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 62
           TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ KLF E N D K+HS
Sbjct: 170 TRTSAFKRLSISTSKKDRPSTSAFDRLKMANDQQQREMKSLKAKLFREENDDNKIHS 226

The following BLAST results are available for this feature:
BLAST of Lag0014480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056218.11.8e-1246.09ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
CAE6523816.14.4e-1130.49Tir4p [Saccharomyces cerevisiae PE-2] >CAF1605517.1 Tir4p [Saccharomyces cerevis... [more]
KAA0065966.15.8e-1144.12hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa][more]
TYK26726.16.0e-0840.94hypothetical protein E5676_scaffold124G00100 [Cucumis melo var. makuwa][more]
KAA0050345.11.7e-0765.00gag protease polyprotein [Cucumis melo var. makuwa] >TYK03559.1 gag protease pol... [more]
BLAST of Lag0014480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UM998.7e-1346.09Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VHY32.8e-1144.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DSN62.9e-0840.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9R68.4e-0865.00Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DZF38.4e-0864.91Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Lag0014480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014480.1Lag0014480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016020 membrane
molecular_function GO:0008233 peptidase activity