Lag0014454 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014454
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr12: 985571 .. 986341 (-)
RNA-Seq Expression	Lag0014454
Synteny	Lag0014454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATAAGGCTTTCTTTTGTGAGGACAGATGGAGGGGCGATCAACCTTTTATAACTGTCTTTCCTAATTTGTATAGAATCTCTCTATCCAATGGCTCCTTCATAAAAGACCTTTTGAATGACGACACTTGGGATCTTCGGTTCCACATGAACTTGATGAATCAGATAGAAGAGTGGGACAGCTTGGTCTCTTTGATAGGCAGGTTTAACCCTTCTAATCGGGAAGATCTCCTTATCTGGAGCTTGGACAATTTAGGTTTGTTTTTGGTCAAGTCAGCCTTAGAGTCTTTGCAATCTAAGCGTCTTATTCTTGAAGATAACCTCAGCTACCAAATTTGGAAAGGCTCAGCCCCTATGAAAGTTAAATTTTTCCTGAGGTCAGCGACCCTTAAGAGCATAAACACCACAAACAGAATTCAAAAGAGATTCCCTAATTTGTACCTCTCCCCTGGTTGGTGCGTGATGTGTGGCAAGAGTGAGGAGTCTCAACCTCATGCTTTGATTCACTGTGACTTTGCAACCTCTGTTTGGGGTCATTTCAGCAAGATTTTTGGGTGGAAAGGTTGTAGACCAAAATGTATGGAAAGATGGTTGGCTGAAATTCTTGATGGTAAGTTTGTGAAAGGCAAAGCTAGGGTGTTGTGGAGGAATGTGGTGCGAGCTGTCCCTTGGCTTCTTTGGAAGGAGAGGAATTCAAGAATTTTTGCAAATAAGAGCTCTTCTTTTGATTTCTTTTGTGATCTTGTACAGTTTACGACAACCTCTTAG

mRNA sequence

ATGGGCGATAAGGCTTTCTTTTGTGAGGACAGATGGAGGGGCGATCAACCTTTTATAACTGTCTTTCCTAATTTGTATAGAATCTCTCTATCCAATGGCTCCTTCATAAAAGACCTTTTGAATGACGACACTTGGGATCTTCGGTTCCACATGAACTTGATGAATCAGATAGAAGAGTGGGACAGCTTGGTCTCTTTGATAGGCAGGTTTAACCCTTCTAATCGGGAAGATCTCCTTATCTGGAGCTTGGACAATTTAGGTTTGTTTTTGGTCAAGTCAGCCTTAGAGTCTTTGCAATCTAAGCGTCTTATTCTTGAAGATAACCTCAGCTACCAAATTTGGAAAGGCTCAGCCCCTATGAAAGTTAAATTTTTCCTGAGGTCAGCGACCCTTAAGAGCATAAACACCACAAACAGAATTCAAAAGAGATTCCCTAATTTGTACCTCTCCCCTGGTTGGTGCGTGATGTGTGGCAAGAGTGAGGAGTCTCAACCTCATGCTTTGATTCACTGTGACTTTGCAACCTCTGTTTGGGGTCATTTCAGCAAGATTTTTGGGTGGAAAGGTTGTAGACCAAAATGTATGGAAAGATGGTTGGCTGAAATTCTTGATGGTAAGTTTGTGAAAGGCAAAGCTAGGGTGTTGTGGAGGAATGTGGTGCGAGCTGTCCCTTGGCTTCTTTGGAAGGAGAGGAATTCAAGAATTTTTGCAAATAAGAGCTCTTCTTTTGATTTCTTTTGTGATCTTGTACAGTTTACGACAACCTCTTAG

Coding sequence (CDS)

ATGGGCGATAAGGCTTTCTTTTGTGAGGACAGATGGAGGGGCGATCAACCTTTTATAACTGTCTTTCCTAATTTGTATAGAATCTCTCTATCCAATGGCTCCTTCATAAAAGACCTTTTGAATGACGACACTTGGGATCTTCGGTTCCACATGAACTTGATGAATCAGATAGAAGAGTGGGACAGCTTGGTCTCTTTGATAGGCAGGTTTAACCCTTCTAATCGGGAAGATCTCCTTATCTGGAGCTTGGACAATTTAGGTTTGTTTTTGGTCAAGTCAGCCTTAGAGTCTTTGCAATCTAAGCGTCTTATTCTTGAAGATAACCTCAGCTACCAAATTTGGAAAGGCTCAGCCCCTATGAAAGTTAAATTTTTCCTGAGGTCAGCGACCCTTAAGAGCATAAACACCACAAACAGAATTCAAAAGAGATTCCCTAATTTGTACCTCTCCCCTGGTTGGTGCGTGATGTGTGGCAAGAGTGAGGAGTCTCAACCTCATGCTTTGATTCACTGTGACTTTGCAACCTCTGTTTGGGGTCATTTCAGCAAGATTTTTGGGTGGAAAGGTTGTAGACCAAAATGTATGGAAAGATGGTTGGCTGAAATTCTTGATGGTAAGTTTGTGAAAGGCAAAGCTAGGGTGTTGTGGAGGAATGTGGTGCGAGCTGTCCCTTGGCTTCTTTGGAAGGAGAGGAATTCAAGAATTTTTGCAAATAAGAGCTCTTCTTTTGATTTCTTTTGTGATCTTGTACAGTTTACGACAACCTCTTAG

Protein sequence

MGDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDDTWDLRFHMNLMNQIEEWDSLVSLIGRFNPSNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS

Homology

[Close]

BLAST of Lag0014454 vs. NCBI nr
Match: XP_030505044.1 (uncharacterized protein LOC115720016 [Cannabis sativa])

HSP 1 Score: 141.7 bits (356), Expect = 8.6e-30
Identity = 77/253 (30.43%), Postives = 121/253 (47.83%), Query Frame = 0


Query: 2   GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNL 61
           GDK  FCED W GD   +  +P L  IS +    I DL+ +         +WD +F  NL
Sbjct: 10  GDKIRFCEDEWLGDSSLLHAYPGLALISRAKNVSIIDLVAEGGAAGESVVSWDFKFRRNL 69

Query: 62  MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
           + +  E  SL+ ++ +       +   D+ IW  D  G+F  KSA     S +       
Sbjct: 70  LER--EIPSLIGMLQQLEHVKLLNVNVDIRIWKPDATGVFSSKSAFAWFNSNQNGARPPW 129

Query: 122 SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
           +  +WK +A  +VK F+       +N  + +Q+R P + +SPGWCV C  S E   H  +
Sbjct: 130 TKSLWKSTAMSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGWCVSCKSSGEEVEHLFL 189

Query: 182 HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
           HC F++ +W    + FG     P+ + + L   + G     +  +LW+  V A  W +W 
Sbjct: 190 HCKFSSKLWSMLLEEFGLIWALPRSVPQMLVSKIKG---SKRQDILWKTAVLATIWAIWL 249

Query: 242 ERNSRIFANKSSS 243
           ERN+RIF +  +S
Sbjct: 250 ERNTRIFEDVENS 257

[Close]

BLAST of Lag0014454 vs. NCBI nr
Match: XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-29
Identity = 77/267 (28.84%), Postives = 127/267 (47.57%), Query Frame = 0


Query: 2   GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNL 61
           GDK  F ED W GD   +  +P L  IS +   +I +L+ +         +WD +F  NL
Sbjct: 65  GDKIRFWEDEWLGDSSLLHTYPGLALISRAKNVYIIELVAEGGAAGESVVSWDFKFRRNL 124

Query: 62  MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
           +   +E  SL+ ++ +       +   D+ IW  D  G+F  KSA     S + +     
Sbjct: 125 LE--KEIPSLIGMLQQMEQVKLLNVNVDIRIWKPDATGVFSSKSAFAWFNSNQNVARPPW 184

Query: 122 SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
           +  +WK  A  +VK F+       +N  + +Q+R P + +SPGWCV C  + E   H  +
Sbjct: 185 TKSLWKSIALSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGWCVCCKSNGEEVEHLFL 244

Query: 182 HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
           HC F++ +W    + FG     P+ + + L   + G     +  +LW+  V A  W +W 
Sbjct: 245 HCKFSSKLWSMLLEEFGLIWALPRSVPQMLMSKIKG---SKRQDILWKTAVLATIWAIWL 304

Query: 242 ERNSRIFANKSSSFDFFCDLVQFTTTS 257
           ERN+RIF +  +S     D ++F T +
Sbjct: 305 ERNTRIFEDVENSAIVVWDKIKFWTAT 326

[Close]

BLAST of Lag0014454 vs. NCBI nr
Match: RVW27524.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-28
Identity = 79/259 (30.50%), Postives = 127/259 (49.03%), Query Frame = 0


Query: 2   GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQI 61
           GD+  F ED W GDQ     FP L R+ +     I  +L      +W+  F  NL  ++I
Sbjct: 740 GDRIRFWEDLWWGDQSLGVRFPRLLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEI 799

Query: 62  EEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---ALESLQSKRLILEDNLSYQI 121
           EE +SL+  +   + S +  D   WSL + GLF VKS   AL  +    L+    L   +
Sbjct: 800 EELESLMQSLDHLHLSPSIPDKRSWSLSSSGLFTVKSFFLALSQISGLPLVFPTKL---V 859

Query: 122 WKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDF 181
           W    P K+KFF+     K +NT++ +Q R P   LSP  C++C +  E+  H  +HC  
Sbjct: 860 WNSQVPFKIKFFVWLVAHKKVNTSDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSM 919

Query: 182 ATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNS 241
              +W    ++       P+ +   ++   +G     +  VLW+    A+ W++W+ERN+
Sbjct: 920 TMGLWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNA 979

Query: 242 RIFANKSSSFDFFCDLVQF 253
           RIF +KS + +   D++ F
Sbjct: 980 RIFEDKSRNSENLWDMIHF 995

[Close]

BLAST of Lag0014454 vs. NCBI nr
Match: CAN77641.1 (hypothetical protein VITISV_007623 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-28
Identity = 79/256 (30.86%), Postives = 122/256 (47.66%), Query Frame = 0


Query: 2    GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLMN-QI 61
            G++  F ED W GDQP  T +P L+R+ +     I  +L      +W+L F  NL + +I
Sbjct: 999  GERIXFWEDLWWGDQPLETQYPRLFRVVVDKNISISSVLGPSRPFSWNLNFRRNLSDFEI 1058

Query: 62   EEWDSLV-SLIGRFNPSNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNLSYQIWKG 121
            E+ + L+ SL   +   +  D  +W L + GLF VKS   +L        D  S  +W  
Sbjct: 1059 EDLEGLMRSLDDLYFSPSVPDARVWPLSSSGLFSVKSFFLALSQSSGSXXDFPSKFVWNS 1118

Query: 122  SAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATS 181
              P KVK F+     K +NT + +Q R P   LSP  C++C K  ES  H  +HC     
Sbjct: 1119 QVPFKVKSFVXLVXHKKVNTNDMLQVRRPYKALSPDICILCMKHGESADHLFLHCSLTIG 1178

Query: 182  VWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIF 241
            +W    ++       P+ +   +     G     +  VLW+    A+  ++W ERN+RIF
Sbjct: 1179 LWHRLFQLAKMDWVPPRSIYDMMYIKFKGFXNSKRGIVLWQAASIALIRVVWWERNARIF 1238

Query: 242  ANKSSSFDFFCDLVQF 253
             NK+ + +F  D + F
Sbjct: 1239 ENKARNSEFLWDSIVF 1254

[Close]

BLAST of Lag0014454 vs. NCBI nr
Match: RVW70235.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-28
Identity = 77/259 (29.73%), Postives = 124/259 (47.88%), Query Frame = 0


Query: 2    GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQI 61
            GD+  F +D W G+QP    +P L R+     + I  +L      +W+  F  NL  ++I
Sbjct: 1746 GDRIRFWDDLWWGEQPLGVQYPRLLRVVTDKNAPISSILGSTRPFSWNFTFRRNLSDSEI 1805

Query: 62   EEWDSLVSLIGRFN-PSNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNLSYQIWKG 121
            E+ + L+    R +  S+  D   WSL + GLF VKS   +L    +      +  +W  
Sbjct: 1806 EDLEGLMQSFDRLHISSSVPDKRSWSLSSSGLFTVKSFFLALSQYSVSPPIFPTKFVWNA 1865

Query: 122  SAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATS 181
              P KVK F+     K +NT + +Q R P   LSP  C +C K  E+  H  +HC     
Sbjct: 1866 QVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIG 1925

Query: 182  VWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIF 241
            +W    +        P+ +   LA   +G     +  VLW+N   A+ W++W+ERN+RIF
Sbjct: 1926 LWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIF 1985

Query: 242  ANKSSSFDFFCDLVQFTTT 256
             +K+ + ++  D + F T+
Sbjct: 1986 EDKARNSEYLWDSICFLTS 2004

[Close]

BLAST of Lag0014454 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-34
Identity = 89/253 (35.18%), Postives = 128/253 (50.59%), Query Frame = 0


Query: 2    GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLND--------DTWDLRFHMNL 61
            GD+  F ED W  D P ++ FP+L  IS    + IK+L+ D        ++W+ +F  NL
Sbjct: 1635 GDRIRFWEDVWIDDYPLVSAFPDLAVISEGRNTPIKELIVDEGLPGGWVESWNFKFRRNL 1694

Query: 62   MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
            M++  E  SL+SL+ +       S  ED  IW  D  G+F  KSA   + S       + 
Sbjct: 1695 MDR--ELPSLISLMQKVEHVRVLSISEDSRIWKPDPSGVFSCKSAFSWMVSNPSFRVLDW 1754

Query: 122  SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
            +  +WK  AP KVK F     L+ +N  +++QKR P LY+SPGWCV C  S ES  H  +
Sbjct: 1755 TKSLWKSCAPSKVKVFGWLLALEKVNVHDKVQKRKPFLYISPGWCVCCKGSGESVGHLFL 1814

Query: 182  HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
             C F   +W +    FG     P+ +   +A  L G   K K   LW++ + A  W +W 
Sbjct: 1815 ECKFIGRIWRYVLGEFGLSWVMPRSVSHLIASKLIGSKRKTK---LWKSAILATIWAVWL 1874

Query: 242  ERNSRIFANKSSS 243
            ERN+RIF   + S
Sbjct: 1875 ERNARIFEGTTKS 1882

[Close]

BLAST of Lag0014454 vs. ExPASy TrEMBL
Match: A0A803PZR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30
Identity = 77/253 (30.43%), Postives = 121/253 (47.83%), Query Frame = 0


Query: 2   GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNL 61
           GDK  FCED W GD   +  +P L  IS +    I DL+ +         +WD +F  NL
Sbjct: 10  GDKIRFCEDEWLGDSSLLHAYPGLALISRAKNVSIIDLVAEGGAAGESVVSWDFKFRRNL 69

Query: 62  MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
           + +  E  SL+ ++ +       +   D+ IW  D  G+F  KSA     S +       
Sbjct: 70  LER--EIPSLIGMLQQLEHVKLLNVNVDIRIWKPDATGVFSSKSAFAWFNSNQNGARPPW 129

Query: 122 SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
           +  +WK +A  +VK F+       +N  + +Q+R P + +SPGWCV C  S E   H  +
Sbjct: 130 TKSLWKSTAMSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGWCVSCKSSGEEVEHLFL 189

Query: 182 HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
           HC F++ +W    + FG     P+ + + L   + G     +  +LW+  V A  W +W 
Sbjct: 190 HCKFSSKLWSMLLEEFGLIWALPRSVPQMLVSKIKG---SKRQDILWKTAVLATIWAIWL 249

Query: 242 ERNSRIFANKSSS 243
           ERN+RIF +  +S
Sbjct: 250 ERNTRIFEDVENS 257

[Close]

BLAST of Lag0014454 vs. ExPASy TrEMBL
Match: A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.2e-30
Identity = 85/267 (31.84%), Postives = 125/267 (46.82%), Query Frame = 0


Query: 2    GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNL 61
            G++  F ED W G       FPNL  IS +    I++++ D+        +WDL F  N+
Sbjct: 1284 GERIRFWEDEWVGGSSLRDQFPNLAVISRAKNVSIQEMITDEGEVGDCVASWDLNFRRNI 1343

Query: 62   MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
            M++  E  SL  L+ +       +  ED   W  D+ G+F  KSA     S     E   
Sbjct: 1344 MDR--EIPSLTQLLQKLEHVRVLNILEDSRTWLPDSCGIFSSKSAFSWFTSTENFDELFW 1403

Query: 122  SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
            +  +WK   P KVK F     L  +N   R+QK+ P + +SPGWCV C  S E   H  +
Sbjct: 1404 TKILWKSRGPSKVKVFGWLVALDKLNVHARLQKKRPFMSISPGWCVCCKISGEDNAHLFL 1463

Query: 182  HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
             C  A+S+W      F  +   P  ++  L   + G     ++  LWR  V +V W++W 
Sbjct: 1464 RCRLASSLWIMLMNEFQIQWAMPSSVDYMLVSKVGG---SKRSTSLWRTTVLSVLWVVWL 1523

Query: 242  ERNSRIFANKSSSFDFFCDLVQFTTTS 257
            ERN+RIF    SS +   D ++F T S
Sbjct: 1524 ERNNRIFEGSESSIETLWDKIKFWTAS 1545

[Close]

BLAST of Lag0014454 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 77/267 (28.84%), Postives = 127/267 (47.57%), Query Frame = 0


Query: 2    GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNL 61
            GDK  F ED W GD   +  +P L  IS +   +I +L+ +         +WD +F  NL
Sbjct: 1216 GDKIRFWEDEWLGDSSLLHTYPGLALISRAKNVYIIELVAEGGAAGESVVSWDFKFRRNL 1275

Query: 62   MNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNL 121
            +   +E  SL+ ++ +       +   D+ IW  D  G+F  KSA     S + +     
Sbjct: 1276 LE--KEIPSLIGMLQQMEQVKLLNVNVDIRIWKPDATGVFSSKSAFAWFNSNQNVARPPW 1335

Query: 122  SYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALI 181
            +  +WK  A  +VK F+       +N  + +Q+R P + +SPGWCV C  + E   H  +
Sbjct: 1336 TKSLWKSIALSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGWCVCCKSNGEEVEHLFL 1395

Query: 182  HCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWK 241
            HC F++ +W    + FG     P+ + + L   + G     +  +LW+  V A  W +W 
Sbjct: 1396 HCKFSSKLWSMLLEEFGLIWALPRSVPQMLMSKIKG---SKRQDILWKTAVLATIWAIWL 1455

Query: 242  ERNSRIFANKSSSFDFFCDLVQFTTTS 257
            ERN+RIF +  +S     D ++F T +
Sbjct: 1456 ERNTRIFEDVENSAIVVWDKIKFWTAT 1477

[Close]

BLAST of Lag0014454 vs. ExPASy TrEMBL
Match: A0A438CWE0 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_278 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.8e-29
Identity = 79/259 (30.50%), Postives = 127/259 (49.03%), Query Frame = 0


Query: 2   GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQI 61
           GD+  F ED W GDQ     FP L R+ +     I  +L      +W+  F  NL  ++I
Sbjct: 740 GDRIRFWEDLWWGDQSLGVRFPRLLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEI 799

Query: 62  EEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---ALESLQSKRLILEDNLSYQI 121
           EE +SL+  +   + S +  D   WSL + GLF VKS   AL  +    L+    L   +
Sbjct: 800 EELESLMQSLDHLHLSPSIPDKRSWSLSSSGLFTVKSFFLALSQISGLPLVFPTKL---V 859

Query: 122 WKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDF 181
           W    P K+KFF+     K +NT++ +Q R P   LSP  C++C +  E+  H  +HC  
Sbjct: 860 WNSQVPFKIKFFVWLVAHKKVNTSDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSM 919

Query: 182 ATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNS 241
              +W    ++       P+ +   ++   +G     +  VLW+    A+ W++W+ERN+
Sbjct: 920 TMGLWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNA 979

Query: 242 RIFANKSSSFDFFCDLVQF 253
           RIF +KS + +   D++ F
Sbjct: 980 RIFEDKSRNSENLWDMIHF 995

The following BLAST results are available for this feature:

BLAST of Lag0014454 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030505044.1	8.6e-30	30.43	uncharacterized protein LOC115720016 [Cannabis sativa]	[more]
XP_030479135.1	2.5e-29	28.84	uncharacterized protein LOC115696374 [Cannabis sativa]	[more]
RVW27524.1	1.6e-28	30.50	putative ribonuclease H protein [Vitis vinifera]	[more]
CAN77641.1	2.8e-28	30.86	hypothetical protein VITISV_007623 [Vitis vinifera]	[more]
RVW70235.1	2.8e-28	29.73	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]

BLAST of Lag0014454 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0014454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803P465	8.1e-34	35.18	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PZR8	4.1e-30	30.43	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QEA6	9.2e-30	31.84	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QGT5	1.2e-29	28.84	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438CWE0	7.8e-29	30.50	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_278 P...	[more]

BLAST of Lag0014454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 89..178 e-value: 2.4E-13 score: 50.6
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 4..233
None	No IPR available	PANTHER	PTHR33116:SF39	RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN	coord: 4..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014454.1	Lag0014454.1	mRNA