Lag0014449 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014449
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMADS-box protein JOINTLESS-like
Locationchr12: 893254 .. 894341 (-)
RNA-Seq ExpressionLag0014449
SyntenyLag0014449
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGGAAGAAAATTCAGATCAAGAAGATCGACAACATAGCTGCAAGGCAAGTGGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAAAAAGCTAAAGAGCTTGCAATTCTCTGTGATGCTGAGATTGGCCTTCTGGTTTTTTCTGCTTCTGGAAAGCTCTTTGACTATGCAAGTTCAAGGTTTTTTTTTTTTTAATTTTCTCTCTCAAAACTTACAAATCTTCATTCTATTCTTGTTTTTGCTTCAACCCTTTTTTCTAGAGAGAGAGAAGAGGAGAGAGAAAAAATAATTGCACTTTAAAAGAAATTAAATAATAGTAGAGAAGGCAAGTACACAAATTCCAGTCAAAAGAAGCCATTGAAAATGGAGATGAAGTGCCAATCTAAAATCTAGGCTAGTTGGGATTTGAAAGCTTTCTTTGCTGATTTTCTTTGGAGGATAATGCTTCTTTTTTGATTTCATAAAATATAGGGTATTTTTTAGTTTGTTATATGATATATGTTGGTGGCTTGAAGATATGTGGAAATTTGAGAGCTTTGCATAAGATTGGGGGAGTTTTTGCAAGTTTTGAGGATGGGTTTGATTCTAAATTTGAATTTGGATTTGGGTTTTCTTGGAATTTAGAAAATTTGTGCTTATATGTTCATATTTTGCATTCATTTTGTGTCCAATTTCTCATATATATTGTATTAATACCATTCAATATAGTCATCCAATAAGATTAGGAATGAGAGTAAAAAATTTTAAAAAGTACAGAAAAATACAAAAACATAGGTTGAGTGAAAAACAAAGGAATTTATCAAAGGACAAAAAAAAAAAAAAAAAAAAAAGAAGAAGCTTTGATAGTACATTACAAAGAAGCTTTTGTTGAAGATGAAACATATAGGTTTTGTTCAAGGTAGATTTTCAAGTATAAGATTCAAAACACTAAAAAGATTTAGTTCGTTCTTCTGTTCGAACCAATTAGTACATATAAGCTTCAAAAGTGACATTTTGAGTGATGGGTTTTCATATCGTCCCTTAACTTTGGATTAGGTAGAAGGGCGAAGCTTAAATCCTCCATGTTGATATCAAATGAAACATAA

mRNA sequence

ATGACGAGGAAGAAAATTCAGATCAAGAAGATCGACAACATAGCTGCAAGGCAAGTGGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAAAAAGCTAAAGAGCTTGCAATTCTCTGTGATGCTGAGATTGGCCTTCTGGTTTTTTCTGCTTCTGGAAAGCTCTTTGACTATGCAAGTAGAAGGGCGAAGCTTAAATCCTCCATGTTGATATCAAATGAAACATAA

Coding sequence (CDS)

ATGACGAGGAAGAAAATTCAGATCAAGAAGATCGACAACATAGCTGCAAGGCAAGTGGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAAAAAGCTAAAGAGCTTGCAATTCTCTGTGATGCTGAGATTGGCCTTCTGGTTTTTTCTGCTTCTGGAAAGCTCTTTGACTATGCAAGTAGAAGGGCGAAGCTTAAATCCTCCATGTTGATATCAAATGAAACATAA

Protein sequence

MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASRRAKLKSSMLISNET
Homology
[Close]
BLAST of Lag0014449 vs. NCBI nr
Match: XP_023511719.1 (MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59

[Close]
BLAST of Lag0014449 vs. NCBI nr
Match: XP_031744925.1 (MADS-box protein SVP isoform X2 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59

[Close]
BLAST of Lag0014449 vs. NCBI nr
Match: XP_038886864.1 (MADS-box protein SVP-like isoform X3 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59

[Close]
BLAST of Lag0014449 vs. NCBI nr
Match: XP_038886865.1 (MADS-box protein SVP-like isoform X4 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59

[Close]
BLAST of Lag0014449 vs. NCBI nr
Match: XP_022971944.1 (MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 59

[Close]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-18
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASR 60
          M R+KIQIKKIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLFDY+S 
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61 RAK 64
            K
Sbjct: 61 SMK 63

[Close]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-17
Identity = 41/63 (65.08%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASR 60
          M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L++FSA+GKLF+++S 
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 RAK 64
          R +
Sbjct: 61 RMR 63

[Close]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-17
Identity = 42/57 (73.68%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 3  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYAS 60
          R++I I++IDN+AARQV FSKRR+GLFKKA+EL+ILCDAE+GL+VFSA+GKLF +AS
Sbjct: 22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 78

[Close]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match: Q6VAM4 (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS23 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-17
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASR 60
          M R KI+IK+IDN  +RQV FSKRR GLFKKA+EL+ILCDAE+GLLVFS++ +L+D+AS 
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFAS- 60

Query: 61 RAKLKSSMLISNET 75
           + +KS +   NET
Sbjct: 61 -SSMKSIIERYNET 72

[Close]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-17
Identity = 40/63 (63.49%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASR 60
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLF++ S 
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61 RAK 64
            K
Sbjct: 61 SMK 63

The following BLAST results are available for this feature:
BLAST of Lag0014449 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023511719.12.1e-21100.00MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo][more]
XP_031744925.12.1e-21100.00MADS-box protein SVP isoform X2 [Cucumis sativus][more]
XP_038886864.12.1e-21100.00MADS-box protein SVP-like isoform X3 [Benincasa hispida][more]
XP_038886865.12.1e-21100.00MADS-box protein SVP-like isoform X4 [Benincasa hispida][more]
XP_022971944.12.1e-21100.00MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima][more]
BLAST of Lag0014449 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FUY65.0e-1868.25MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
O827941.5e-1765.08MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1[more]
Q5K4R04.3e-1773.68MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q6VAM49.5e-1762.16MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q9FVC19.5e-1763.49MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 54.81
coord: 3..23
score: 53.82
coord: 23..38
score: 66.87
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 2.4E-34
score: 130.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 4.1E-23
score: 80.7
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 27.866053
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..72
e-value: 1.2E-21
score: 78.3
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 2..61
NoneNo IPR availablePANTHERPTHR48019:SF6MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1coord: 1..63
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014449.1Lag0014449.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding