Lag0014420 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014420
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein PXR1 isoform X1
Locationchr12: 581294 .. 584210 (-)
RNA-Seq ExpressionLag0014420
SyntenyLag0014420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAAGCGAAAGAAAATCCAAGGAGAAGAGGAAGAACAGAAGACCGGCCTCATCTTCTGAAGGTACAGATTTCTGTTCTTCTTTTGTCTATGAAGATTTCATTTCCCCTCGAATTTTGATTTACTCCAGTATTTTCAACAAGATTGCCCAAATGAAAACGGTATCCCTAGAGATTTCTGTGTCTTTTCTCAGTAATCTACGGTGAATTACTTGATTGCACTGTGTTTTAATGCTGTTGTTCGTAAAAGTTTAGACGAGAAGAGGAGCAAGAGACCGAGAGCTGCAGAAGATGAGGAAAGGGAGAGTAGAAGGAGCGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGGTAAAGTTGAACCGGCAGTTTCCAGAGATATGCATGTTACGAATTATGTTTGGTATTACTATGTATTATCTGCTAGGTTGTCGAGAGGTTTTTTGCTTCTTCGTTGGGTTGCTCGTTTAGGTTATCTGGTATTAAACTGATGTTGATGTTGAGGATCACATTGAAAAGTTTGGTAGAGACCTCACAATTGATAAGCTACAAGGGTCACTCCACTCATTGCCAATTGGTTTTGAGATGAAACCCCATGTTAATCTAATATGGTATCGGAGTCCATTAAATCCAAACGGGTGTTCGGTCTAAAAGAAAAAAAAAAGGGAATGGTGAACCAAAGAGGCATCATCTTGAGGGTGTATGTTGAGGATCCCACATTGAAAAAGATTAGTGGAGACCTCACAATTTATAAGCTATAAGGGTCACCCCACTCATTGCCAATTGGTTTTGAGATGGAACCCATTTTAATCTAATAGTAGATTCTATGGTCAAGTAATATAGAAATTTGAAATCTTTTTGTTTTGATATATTCATCAAATTTATTCTCTCTGCTACTTTTTCTGTCTTTTTCTCCAATTTCACGTTTGGAACTTGTGGTTTCAAGAGAGAAGATTATCCTGTAAGATTTTGAATACACGAGTTTTTACTGTTCCAGTTTTTCCACAGCAGCCTCATTGCAGATGCAGATGTAACTTTGACTTATTTACTTGTGAACGGGATTGTGAAGAAGTACTTTATAAATAGATTTCAAAAGTAAAGTTTTGTCATGCCCTGCCTTTTTCTCTCAGAGAAGAAGTCGAAGGATAGTCACAAAGGCAAGCATCATAGGGGCGACCACCGTTCAGTGAGTTCTTCTGTAGTGATGTAGCATGCATTTTGGTTTATGTTTTATTTTTTCTACTTTTACATTCATTTACTGAACTACACTTCTCGTGTTGCCTTTTTCGTGCAATTGAGCATCCCTTCACTTTTCCTCTGTTTGTTATTCTTAGTTGGGTGGGATTGGGAAGTAGGAAATTGATTTCAATGCTTTATGTAGGCAGTTTTGATTTATCATGCTTCAGTTTTTTTTCTACTTCACCGCCTCTCAATTATTAATATTATTTCTTGAGGTATTCATATTCAGTAAATCTAGTATTCAATTATCCTACTTTAGGATCATCCTAAGTGGTTTTGAAATATGGTTCACTCATATATAATGAAAGACAATAAAAATGTCTGGAAGATATTGGATTGTTTTTCACTATTTACTTTTTAAATTCATGGATCTGTGCAGCTGAACTCAATTTATGGGATCACTGGGAGTGAGAAACAAGAATATAATGGAAGGGACTTGTTAAAGATTAATCAAAATGGAAGATTGAGGTCATTAGTGTTTACTGGTGTTTAAGGATTTCGTTTAGGTATGTAGAGGGCTAGAAATGACTAACGTAAGTTGCACAAGGGGAATGTGTTTGCAATCTAACATTCAGCTTCTCATAACCTGGGCTTTCCTATTCTTTGTTATTTTTCTTTTGCTTTTTCATGGGAAGAACCATTGTTAATATCAAATTGTTCGGTACTATGCTTCTTGAATATAGAAATTAATATTAATCTAGTTGCAATAAGGTTGTCCTATGACCAATTCTGAACTCTGAACTACGTTAACCATGTACTCCTTTCCTTAATCTTATATAGGAATTACATTTATGTTACACGGTCCTAGAGAAGTGAAGAATCAAATGAACCAAAATCTTTTACATTTTATAGCCCATCTTGTTTCTTTTGTGGGGAGGGGTGGATGTTGAAGTTACTGGATCGGCATTATCCACTAAAATTAATTTATGGTTTGCTGATTTGACCAATAGGAGAAACATCTTGGCTTTATTCATATTTTTTAGTTATTTTGTCCCTTCTACCAAACTTCCTGCTTCAGAAGATCTCTTTCCTGCCTCATCAGATTATGGTGAACCTTCTACCTGAATTCAGCCAGCGAAGTACTGGCATGAATTTTATTGGGAAGTTTATAAATTTTCTAGGACTAGCAATTCTGGGCAAAATTCAACTTTGTGTCAGGATCTCCCCATTTAAGGCTTGATCTTTTAGTTACTTCTGCAGAACTCCATGCAAGATTTGTTCCTCGAAGTATGAGAGGAAAATTTTGATGCGACTGTACTTTTCTATTTCTTTTTAAGCAATTAAAAGCAATGCCTTCGTTTGTTTTAGTTTTTTCCTTTTGGAATTGGAGAGCATTTACTATGTTCTATTTCTTGTTTTTCGGCTGTGAACCTTCTGGATCTTTGGGATTAATTTTGGCATAATTTTGTTGATTCAGAGAGCCAAAATTCAAGAACTGTCTAAGGAAGATTACTTCTCAAAGAATAACGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTTTCATCCGAGTCAGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACCAAAAGCTCGAATCTCGATATTATGAGGGTATTTCAAGTGGGCCTCGGACATCTCATAACTGGAAAATCAAGGGGTGA

mRNA sequence

ATGGGCGGAAGCGAAAGAAAATCCAAGGAGAAGAGGAAGAACAGAAGACCGGCCTCATCTTCTGAAGACGAGAAGAGGAGCAAGAGACCGAGAGCTGCAGAAGATGAGGAAAGGGAGAGTAGAAGGAGCGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGAGAAGAAGTCGAAGGATAGTCACAAAGGCAAGCATCATAGGGGCGACCACCGTTCAAGAGCCAAAATTCAAGAACTGTCTAAGGAAGATTACTTCTCAAAGAATAACGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTTTCATCCGAGTCAGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACCAAAAGCTCGAATCTCGATATTATGAGGGTATTTCAAGTGGGCCTCGGACATCTCATAACTGGAAAATCAAGGGGTGA

Coding sequence (CDS)

ATGGGCGGAAGCGAAAGAAAATCCAAGGAGAAGAGGAAGAACAGAAGACCGGCCTCATCTTCTGAAGACGAGAAGAGGAGCAAGAGACCGAGAGCTGCAGAAGATGAGGAAAGGGAGAGTAGAAGGAGCGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGAGAAGAAGTCGAAGGATAGTCACAAAGGCAAGCATCATAGGGGCGACCACCGTTCAAGAGCCAAAATTCAAGAACTGTCTAAGGAAGATTACTTCTCAAAGAATAACGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTTTCATCCGAGTCAGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACCAAAAGCTCGAATCTCGATATTATGAGGGTATTTCAAGTGGGCCTCGGACATCTCATAACTGGAAAATCAAGGGGTGA

Protein sequence

MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKRHSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIKG
Homology
BLAST of Lag0014420 vs. NCBI nr
Match: XP_008447104.1 (PREDICTED: protein PXR1 isoform X2 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 6.0e-66
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60
           MGGSERKSKEKRK+R+ ASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSK 
Sbjct: 1   MGGSERKSKEKRKHRKSASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKS 60

Query: 61  HSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120
           HSEKKSKD HKGKHH+GDH SR KIQELSKEDYFSKNNEFATWLKD KNVYFSDLSSESA
Sbjct: 61  HSEKKSKDLHKGKHHKGDHLSRTKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESA 120

Query: 121 RELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIKG 159
           RELFSDFVELWND+KLESRYYEGISSGPRTSHNWKIKG
Sbjct: 121 RELFSDFVELWNDRKLESRYYEGISSGPRTSHNWKIKG 158

BLAST of Lag0014420 vs. NCBI nr
Match: XP_038888829.1 (style cell-cycle inhibitor 1-A isoform X1 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 2.3e-65
Identity = 147/157 (93.63%), Postives = 152/157 (96.82%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60
           MGGSERKSKEKRK+R+ ASSSEDEK SKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR
Sbjct: 1   MGGSERKSKEKRKHRKAASSSEDEKSSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60

Query: 61  HSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120
           HSEKKSKD HKGKHH+GDH SR KIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA
Sbjct: 61  HSEKKSKDIHKGKHHKGDHLSRDKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120

Query: 121 RELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIK 158
           RELFSDFVELWND+KL+SRYYEGISSGPRTSHNWKIK
Sbjct: 121 RELFSDFVELWNDRKLKSRYYEGISSGPRTSHNWKIK 157

BLAST of Lag0014420 vs. NCBI nr
Match: XP_022147997.1 (protein PXR1 [Momordica charantia])

HSP 1 Score: 259.2 bits (661), Expect = 2.3e-65
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60
           MGGSERKSKEKRKNR+ ASSSEDEKRSKRPRAAED+ RE RRSDKREKRKEKKSHKHSK 
Sbjct: 1   MGGSERKSKEKRKNRKAASSSEDEKRSKRPRAAEDDGREIRRSDKREKRKEKKSHKHSKH 60

Query: 61  HSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120
           HSEKKSKD HKGKHHRGDH SRAK +ELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA
Sbjct: 61  HSEKKSKDIHKGKHHRGDHHSRAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120

Query: 121 RELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIKG 159
           R+LFSDFVELWNDQKLESRYYEGI+SGPRTSHNWKIKG
Sbjct: 121 RKLFSDFVELWNDQKLESRYYEGITSGPRTSHNWKIKG 158

BLAST of Lag0014420 vs. NCBI nr
Match: XP_004139834.1 (style cell-cycle inhibitor 1-A [Cucumis sativus] >KGN44283.1 hypothetical protein Csa_016106 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60
           M GSERKSKEKRK+R+  SSS+D+KRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR
Sbjct: 1   MAGSERKSKEKRKHRKSVSSSDDDKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60

Query: 61  HSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120
           HSEKKSKD HKGKHH+GDH SRAKIQELSKEDYFSKNNEFATWLKD KNVYFSDLSSESA
Sbjct: 61  HSEKKSKDLHKGKHHKGDHLSRAKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESA 120

Query: 121 RELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIKG 159
           RELFSDFVELWND+KLESRYYEGISSGPRTSHNWKIKG
Sbjct: 121 RELFSDFVELWNDRKLESRYYEGISSGPRTSHNWKIKG 158

BLAST of Lag0014420 vs. NCBI nr
Match: XP_023553665.1 (luc7-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 6.2e-63
Identity = 145/158 (91.77%), Postives = 149/158 (94.30%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKR 60
           MGGSERKSKEKRKNRR ASSSEDEKRSKRPRAAEDEERESRR DKREKRKEKKSHKHSKR
Sbjct: 1   MGGSERKSKEKRKNRRAASSSEDEKRSKRPRAAEDEERESRRRDKREKRKEKKSHKHSKR 60

Query: 61  HSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESA 120
            SEKKSKD  KGKHHR DH  RAKI+ELS+EDYF KNNEFATWLKDEKNVYFSDLSSESA
Sbjct: 61  DSEKKSKDILKGKHHRDDHPLRAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESA 120

Query: 121 RELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIKG 159
           R+LFSDFVELWNDQ+LESRYYEGISSGPRTSHNWKIKG
Sbjct: 121 RKLFSDFVELWNDQRLESRYYEGISSGPRTSHNWKIKG 158

BLAST of Lag0014420 vs. ExPASy Swiss-Prot
Match: Q8GWY0 (Style cell-cycle inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=SCI1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-32
Identity = 96/159 (60.38%), Postives = 117/159 (73.58%), Query Frame = 0

Query: 4   SERKSKEKRKNR---RPASSSEDEKRSKRPRAAE-DEERESRRSDKREKRKEKKSHKHSK 63
           SER SKEK+++R     +SSS+ E++ KR R  E D+ER SRRSDK    K+KKSHKH K
Sbjct: 3   SERSSKEKKRSRARSEDSSSSDYEEKVKRHRGTEKDDERRSRRSDK----KDKKSHKHHK 62

Query: 64  RHSEKKSKDSH-KGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSE 123
             + KKSKD   K KH   DH+ +  I ELS EDYFSKNNEFATWLK+EK  YF+DL++E
Sbjct: 63  SSTSKKSKDDKPKKKHTESDHKLKEGIPELSMEDYFSKNNEFATWLKEEKRTYFNDLTTE 122

Query: 124 SARELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIK 158
           +AR LFS FV+ WN  KLESRYYEGIS+ PRT+H+W IK
Sbjct: 123 AARGLFSRFVKRWNRGKLESRYYEGISTAPRTAHDWMIK 157

BLAST of Lag0014420 vs. ExPASy Swiss-Prot
Match: A0A1S4AX27 (Style cell-cycle inhibitor 1-A OS=Nicotiana tabacum OX=4097 GN=SCI1A PE=2 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-31
Identity = 89/158 (56.33%), Postives = 117/158 (74.05%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPASSSE-DEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSK 60
           MG  ++  +EKRK++R + SS  DE +SKR     DEE   RR +K++K K++K   HS 
Sbjct: 1   MGSDKKTPEEKRKHKRSSPSSPLDEVKSKRQNIKGDEE---RRKEKKDKSKKEKHKSHSS 60

Query: 61  RHSEKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSSES 120
              EKKS + HK K H+   +S+ K +ELSK+DYFSKNNEFATWLKD+KN++FSDLSSE+
Sbjct: 61  --EEKKSGEKHKTKSHKHKDKSKNKFEELSKDDYFSKNNEFATWLKDKKNLFFSDLSSET 120

Query: 121 ARELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIK 158
           AR+LFSDFV  WN  KL+S+YYEGI++GPR+SH W IK
Sbjct: 121 ARDLFSDFVIQWNKGKLDSQYYEGIATGPRSSHAWNIK 153

BLAST of Lag0014420 vs. ExPASy Swiss-Prot
Match: A0A1S3XQD6 (Style cell-cycle inhibitor 1-B OS=Nicotiana tabacum OX=4097 GN=SCI1B PE=2 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-30
Identity = 91/160 (56.88%), Postives = 120/160 (75.00%), Query Frame = 0

Query: 1   MGGSERKSKEKRKNRRPA-SSSEDEKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSK 60
           MG  ++ ++EKRK++R + SS  DE +SKR     DEER  R+   + K+++ KSHK SK
Sbjct: 1   MGSDKKTTEEKRKHKRNSPSSPRDEVKSKRQNIKGDEER--RKEKDKSKKEKHKSHK-SK 60

Query: 61  RHS--EKKSKDSHKGKHHRGDHRSRAKIQELSKEDYFSKNNEFATWLKDEKNVYFSDLSS 120
            HS  EKKS + HK K H+   +S+ K +ELSK+DYFSKNNEFA+WLKD+KN++FSDLSS
Sbjct: 61  CHSSEEKKSGEKHKTKSHKHKDKSKNKFEELSKDDYFSKNNEFASWLKDKKNLFFSDLSS 120

Query: 121 ESARELFSDFVELWNDQKLESRYYEGISSGPRTSHNWKIK 158
           E+AR LFSDFV  WN  KL+S+YYEGI++GPR+SH W IK
Sbjct: 121 ETARNLFSDFVIQWNKGKLDSQYYEGIATGPRSSHAWNIK 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008447104.16.0e-6693.67PREDICTED: protein PXR1 isoform X2 [Cucumis melo][more]
XP_038888829.12.3e-6593.63style cell-cycle inhibitor 1-A isoform X1 [Benincasa hispida][more]
XP_022147997.12.3e-6592.41protein PXR1 [Momordica charantia][more]
XP_004139834.13.0e-6592.41style cell-cycle inhibitor 1-A [Cucumis sativus] >KGN44283.1 hypothetical protei... [more]
XP_023553665.16.2e-6391.77luc7-like protein 3 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q8GWY02.6e-3260.38Style cell-cycle inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=SCI1 PE=2 SV=1[more]
A0A1S4AX273.8e-3156.33Style cell-cycle inhibitor 1-A OS=Nicotiana tabacum OX=4097 GN=SCI1A PE=2 SV=2[more]
A0A1S3XQD61.9e-3056.88Style cell-cycle inhibitor 1-B OS=Nicotiana tabacum OX=4097 GN=SCI1B PE=2 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..80
IPR044688Style cell-cycle inhibitor 1-likePANTHERPTHR34117STYLE CELL-CYCLE INHIBITOR 1coord: 4..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014420.1Lag0014420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048467 gynoecium development