Lag0014157 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014157
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome c6, chloroplastic
Location	chr1: 55754041 .. 55758067 (-)
RNA-Seq Expression	Lag0014157
Synteny	Lag0014157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTTCTCTCCGTAATTTCAGATTTTAGCCCTAGTCCCCATTGCTTTCCAGTAAAGGTCTCTCTCTCTTCTCTCACTTTTCTTTGTATGTATCTCTCGCTGAACATTGAAAGTTTCAAAGTTGTAAGCCAATCAGGGAGAGCGACGAACAGCAGTTTGTCAAATGCATAGACAAGTTAAGATTCTCAAGACCTTGGCCCCCCCTCTGATTGCTGTGCTTATAGCATTATCTCCTGTCAACAAAACCCCAGGTAAAATCATACCCGCACACACCTATTGTGTATGGAATTCACCTCTTATACCTGTTTTTTTTTTTCAATTTTCTAGAACGCCATAAACGCACATTGTGAAATGTATTACAGAAATCTATTCTGATTTTTATTTCACGGCATGATTGATTTTTCCTAGAATCAGATGCAGTGTGACTGTCAGAATGTTGTCAAATCGTCACTAATCTCAATTTTGGGGTCAATTTATAAATCCTTGTCATCTTTTTCAAGACTCATCTCGTCATATAGATGGTTGTGAATTGACTTGAGAATATATGGTTAACACATTATAACTTCAACCTGAAGGTTGGAGGTGAGAATCCCCCACTCACGTGTTTGTTGAACTAAAAAAATGAAAAAAGAAAAAATGGTTATAAATTAAAGAAAGTCGATTCGTGTATAAACATGTGGAAGTGTGTGAGAGAAATGTCCACTTCTGTTCCTCAAACTCAAATACTGTCTGGTGGTTTCCCTAAAAGTTGAAATGATTTGAATGTAATTGTCAAAGTTATACTTACGCTCATTAAGCTTAAATCACTCTAAATTACTTATGTTAATTAGGAAACAAATGCATGTTAAGGGAAATTTACAAAATCATGAAGAATTTAGAAGATCGTTTCCTTTAGGGTTTCTGCTACCCGATTTTGTTTTTGTTTTTGTTTTGAAAAAATGTGCATTTGGTATATTTTTTCATTTTAAGAAATGATTTAGAAATTTCACATAAATTTCCTTAAACAAAAATGTTCCCATAATTGATTTTTTATTCTTACCTCTCATTTGTCACTTTTTTTTTTTTTTTTTTTTTTAATTACAAGCAAAAGTTTCTATTTGAAATTTAATAGACATAAAACCAGAAATAAGTATTGGAAACGCCATCAAATAGACCCTCGATATACTTTTCCCTTCTCTCTTAACTCAAATCAAAGATCTTATTGATATTCAATTGTTTATAGCATTTCCTGACTTGGCTTCGCGCATTTAATTTATGTAAAAGGATGTCTTGCGCTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCTTTGTTTAGTCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGTTAGTGTTACTATCTCTTACACTATTTAATTTAGATAAACATCTTTTAATATCAGTGTATGGCATGCTAATATCAGCATGTTTATCTGACTGTGTTATAATTATAATCGTACTCTGTTTTGATCGACCAACATCAGTATCTTTCTTGGAATCCGCTTTTCTTGTTCAGTTTCCTTTTCCGTTTCCTATTCTTTCTGTGTGAAACATTTCTGCTGTTACTGTAATTGAATTTTTTCCCCTTCTCTCCTAGGGTGCGACACTCTTTACAAGTGATCTTGAAAGGTAATCATCTAGAACTTGAGAAAACAATGAATTTAAAATCAGTATATTATATCAGCCCAATGTGCATGCAACATTGCCTTACTAGTATCATGAGATATTAGAACACAGATCTACTTTATATCTCTCTTCTATTTATGCGTTCGAGTTAAAATAATCATGTACTTTTTGATATTGTACAAGTGTGACTGTTGGATGACATTGATTATAGTTGAGGATTAGGAAGTTTGTAGATTCATGAATAAGGGCAATAGCTTTACTGTTATATGGATTTTTGGTAGGGGTTAAAAGATCTACATGGCCTTAGCTCAAAATGGGGAAATCAGGCAAATATGTCCAAGAACTGTTTTTTTTTTTCCTCTCGCCAGCCTTCAATCGTACAGGAAAAACTAGCTTGACTGCAATCTTTTCATTTTCCTTAAATATGCAATTTAATTAAAAAATGCAAACTTTTGTTTCTTTAAAGAATATTGGGGGAGGGTACAGAGTGGTGAACATCCAACCAACCCCGGAGATCTGAAGAAAACTCATATCCAAACAGAAATATAGAAAGCCTGGATACTCAAAAAAGAAAACTCATATCCAAATTGCAACCAAGGACTTTATAACCGAGGCTACAAGTATTCTACCGGACTACCCTATATCTATATCACCCTGTTTGCCTAAATAATCTATCTTATTTCGAATGTCTCAAAAGCTTGTCATTTTAACAATACTCGCCTTAAATTGGTTTGGCTTCTTTCCAGAGACTTGCGCCTTTAACAATTTGATTTAAAAAATCACCACAATTTTACAGAGATTCGGTGTGAAATAATAAAACTTTCGAATTTTCTCCCTATCCAGCAATGCAGTAATCGGTTTACCGATTGGGTTTGTTGACGTGATTGAACAAAACTGAACGGTAGTAGTGAATGATTGTTGTCTTTGTTCTGTAACCCAGGAGGATGCGCGATTAATTTAAAAAAAAAGAAAGAAGGAAAGCCATTCTAGAACCCTCTGCTGAACTATAAATATTTCACAATTTTGTTTCATTGTTCTTTCTATAGAAATGGAGCTGATTCCGAAGAGGAGATCTACCATATTACATATTATGGGAAAGGAAGAATGCCTGTGAGTAATTATTTGTAACTATTATTTAAGCTCGAAAAGATGTATATAAATCAATGCTTAATGATGGGTTTCAGGGTTTTGGTGAGAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGGTACAGGCAGATCGGGGGTGGCCAAACCCCTAGATGGTAATTGATTTTTGCGCCAGAATATTATGCCTTGGTTACCCATTACTAATTTATGTTTACTTTTGTAAAAAAATGAAGTCTTACCTGTCAATATTTCCCAAATTTGTATCTGAATCAATGGCCTTATATATGCTATATGTGCTACATGGACTGTTGCTTTGTCCCGTTGATAAATATGGCAATATGTGTTTCTAAAGTGCGACGCCCATACTTGGCTATCGCACATGAAATGATCATAAAATGAACGTCAAACTAACGACTCGAACTCAAATGTTCCAATTTCAAAAATTTGGAAGACGGGAATATATATGTGCCAATTTGAACAAGAAAAAGTATAGTGATGCACTTTTGCATTGTTCTTATTCAATATTCTCCTTTGAGGATTTGAAGATTATCGAAGGAACATTGTAGGAACATTTATCGAAAGCTTTCCTCCTTATTTGTTGTGTCCAATTGAATTCATAAACACGTTGCAGAACATTAAAGAACAGGAACACAAACCAGACTAACCAAAGATTAACCAATAAGCTTGATCAGAAGCTGAAGTGATCAATGTAAGTGTATTGAGACACCAAAGCAAAAAATCACATGTAAACTTAAATAATGCAATGTATAAAAGTGACTTATCTGAAATGGATGCGATTTGTTCTGGGTGGGGAAGCAAACCTCAAAGACAATACCCGTTGAAGCTGCAATAGTGTTGTTGGTGATTGAGTGATTGAAGCTGCAAGATGACCTGATGGAAGAAACAAACCTTTTAAGTCCAACACCGACTCATCACAACAATGTGTTTACCCTTCCCCAGATCATGCTGGCAGCTTCAACCTCTCAAACCAACACATGTTACAAGACCAGCACAAACACAGAGAGGGAGAGCCAAACAAGTTAAGAAAGCTTGAGGGCTGCGTCAAAGATTTGAAGGAGAAGGAAAAAGAACAAGCCTGTACGAGCTCTCGTGACTGTCTGTGTGTACAGAGTCGTCTATCCTTTGAGTTGGCACAGCGGTTGAAGAGTAGTTTATATAATGCAGCTTTTCTGCTGTTGCTTACAGCTATTTTCCGCTGA

mRNA sequence

ATGCATCTTCTCTCCGTAATTTCAGATTTTAGCCCTAGTCCCCATTGCTTTCCAGTAAAGGGAGAGCGACGAACAGCAGTTTGTCAAATGCATAGACAAGTTAAGATTCTCAAGACCTTGGCCCCCCCTCTGATTGCTGTGCTTATAGCATTATCTCCTGTCAACAAAACCCCAGGATGTCTTGCGCTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCTTTGTTTAGTCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCGACACTCTTTACAAGTGATCTTGAAAGAAATGGAGCTGATTCCGAAGAGGAGATCTACCATATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGTCCAACACCGACTCATCACAACAATGTGTTTACCCTTCCCCAGATCATGCTGGCAGCTTCAACCTCTCAAACCAACACATGTTACAAGACCAGCACAAACACAGAGAGGGAGAGCCAAACAAGTTAAGAAAGCTTGAGGGCTGCGTCAAAGATTTGAAGGAGAAGGAAAAAGAACAAGCCTGTACGAGCTCTCGTGACTGTCTGTGTGTACAGAGTCGTCTATCCTTTGAGTTGGCACAGCGGTTGAAGAGTAGTTTATATAATGCAGCTTTTCTGCTGTTGCTTACAGCTATTTTCCGCTGA

Coding sequence (CDS)

ATGCATCTTCTCTCCGTAATTTCAGATTTTAGCCCTAGTCCCCATTGCTTTCCAGTAAAGGGAGAGCGACGAACAGCAGTTTGTCAAATGCATAGACAAGTTAAGATTCTCAAGACCTTGGCCCCCCCTCTGATTGCTGTGCTTATAGCATTATCTCCTGTCAACAAAACCCCAGGATGTCTTGCGCTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCTTTGTTTAGTCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCGACACTCTTTACAAGTGATCTTGAAAGAAATGGAGCTGATTCCGAAGAGGAGATCTACCATATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGTCCAACACCGACTCATCACAACAATGTGTTTACCCTTCCCCAGATCATGCTGGCAGCTTCAACCTCTCAAACCAACACATGTTACAAGACCAGCACAAACACAGAGAGGGAGAGCCAAACAAGTTAAGAAAGCTTGAGGGCTGCGTCAAAGATTTGAAGGAGAAGGAAAAAGAACAAGCCTGTACGAGCTCTCGTGACTGTCTGTGTGTACAGAGTCGTCTATCCTTTGAGTTGGCACAGCGGTTGAAGAGTAGTTTATATAATGCAGCTTTTCTGCTGTTGCTTACAGCTATTTTCCGCTGA

Protein sequence

MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSPDHAGSFNLSNQHMLQDQHKHREGEPNKLRKLEGCVKDLKEKEKEQACTSSRDCLCVQSRLSFELAQRLKSSLYNAAFLLLLTAIFR

Homology

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BLAST of Lag0014157 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-74
Identity = 142/170 (83.53%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           M  LSV SDFS SPHCFP+K +RRTAVCQM RQVKILKTLAPPLIAVLIAL P+NKTPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
            ALAQ+AEIERGGALFS ACIGCHD GGNIIQPGATLF+SDLERNGADSEEEIY ITYYG
Sbjct: 61  YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRG----WPNP 166

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BLAST of Lag0014157 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 4.3e-74
Identity = 137/170 (80.59%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           MHLLS  S+F P+PHCFP+K +RRT VCQ+  QVKIL +LAPPLIAV +ALSP+N+TPGC
Sbjct: 1   MHLLSATSNFCPTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
           LALAQTAEIERGGALF+QACIGCHDGGGNIIQPGATLF+SDLERNGAD+EEEIY ITYYG
Sbjct: 61  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRG----WPNP 166

[Close]

BLAST of Lag0014157 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.5 bits (737), Expect = 5.7e-74
Identity = 141/170 (82.94%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           M  LSV SDFS SPHCFP+K +RRTAVCQM RQV ILKTLAPPLIAVLIAL P+NKTPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
            ALAQ+AEIERGGALFS ACIGCHD GGNIIQPGATLF+SDLERNGADSEEEIY ITYYG
Sbjct: 61  YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRG----WPNP 166

[Close]

BLAST of Lag0014157 vs. NCBI nr
Match: XP_023003546.1 (cytochrome c6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 1.6e-73
Identity = 140/170 (82.35%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           M LLSVISDFS SPHCF +K +RRT VC+M RQVK LK LAPPLIAVLIAL P+NKTPGC
Sbjct: 1   MRLLSVISDFSLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
            ALAQ+AEIERGGALFS ACIGCHDGGGNIIQPGATLF+SDLERNGADSEEEIY ITYYG
Sbjct: 61  YALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRG----WPNP 166

[Close]

BLAST of Lag0014157 vs. NCBI nr
Match: KAG6594380.1 (Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.5 bits (711), Expect = 5.9e-71
Identity = 137/161 (85.09%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTP-G 60
           M  LSV S FS SPHCFP++ +RRTAVCQM RQVKILKTLAPPLIAVLIAL P+NKTP G
Sbjct: 1   MRFLSVTSAFSLSPHCFPLRVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPEG 60

Query: 61  CLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYY 120
           C ALAQ+AEIERGGALFS ACIGCHD GGNIIQPGATLF+SDLERN ADSEEEIY ITYY
Sbjct: 61  CYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNRADSEEEIYQITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTD 161
           GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQAD 161

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BLAST of Lag0014157 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 8.0e-47
Identity = 89/125 (71.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 36  ILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGA 95
           +LK LAPPL AVL+A+SP+   P   +L QT +I+RG  LF++ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE--SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 96  TLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 155
           TLFT DLERNG D+EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 156 KSNTD 161
           K   D
Sbjct: 164 KFQAD 166

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BLAST of Lag0014157 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 0


Query: 35  KILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPG 94
           +IL T    L+ +L  ++P          AQ A++  GG +FS  C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 95  ATLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 154
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 110

Query: 155 VKSNTDSSQQ 165
           V   ++   Q
Sbjct: 123 VLDQSEKGWQ 110

[Close]

BLAST of Lag0014157 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 0


Query: 35  KILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPG 94
           +IL T    L+ +L  ++P          AQ A++  GG +FS  C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 95  ATLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 154
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 110

Query: 155 VKSNTDSSQQ 165
           V   ++   Q
Sbjct: 123 VLDQSEKGWQ 110

[Close]

BLAST of Lag0014157 vs. ExPASy Swiss-Prot
Match: P00115 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27167 / PCC 6312) OX=195253 GN=petJ PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 40/119 (33.61%), Postives = 54/119 (45.38%), Query Frame = 0


Query: 37  LKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGAT 96
           +KTL   L   L+ L+    TP     A  A+I  G  +FS  C  CH GGGN++    T
Sbjct: 1   MKTLLTILALTLVTLTTWLSTP-----AFAADIADGAKVFSANCAACHMGGGNVVMANKT 60

Query: 97  LFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 156
           L    LE+ G +S + I +    GK  MP             FG RL E +I  +A +V
Sbjct: 61  LKKEALEQFGMNSADAIMYQVQNGKNAMP------------AFGGRLSEAQIENVAAYV 102

[Close]

BLAST of Lag0014157 vs. ExPASy Swiss-Prot
Match: P0A3X9 (Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=petJ PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 46  AVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERN 105
           A+ IAL  V+ TP  LA    A++  G  +FS  C  CH GGGN++    TL    LE+ 
Sbjct: 10  AIAIALL-VSLTPAALA----ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQF 69

Query: 106 GADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 156
           G  SE+ I +   +GK  MP             F  RL +E+I+ +A +V
Sbjct: 70  GMYSEDAIIYQVQHGKNAMP------------AFAGRLTDEQIQDVAAYV 102

[Close]

BLAST of Lag0014157 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 5.5e-75
Identity = 142/170 (83.53%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           M  LSV SDFS SPHCFP+K +RRTAVCQM RQVKILKTLAPPLIAVLIAL P+NKTPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
            ALAQ+AEIERGGALFS ACIGCHD GGNIIQPGATLF+SDLERNGADSEEEIY ITYYG
Sbjct: 61  YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRG----WPNP 166

[Close]

BLAST of Lag0014157 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 8.0e-74
Identity = 140/170 (82.35%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGC 60
           M LLSVISDFS SPHCF +K +RRT VC+M RQVK LK LAPPLIAVLIAL P+NKTPGC
Sbjct: 1   MRLLSVISDFSLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKTPGC 60

Query: 61  LALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYG 120
            ALAQ+AEIERGGALFS ACIGCHDGGGNIIQPGATLF+SDLERNGADSEEEIY ITYYG
Sbjct: 61  YALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQITYYG 120

Query: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           KGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK   D      +P+P
Sbjct: 121 KGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRG----WPNP 166

[Close]

BLAST of Lag0014157 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.4e-70
Identity = 134/161 (83.23%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 1   MHLLSVISDFSPSPHCFPVKGERRTAVCQMH-RQVKILKTLAPPLIAVLIALSPVNKTPG 60
           MHLLS ISDFS + HCF +KGER TAVCQ   +Q+KI K+ APPLIAVLIALSP+ KTPG
Sbjct: 1   MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPG 60

Query: 61  CLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYY 120
           C  LAQT EIERGGALFSQ+CIGCHDGGGNIIQPGATLF+SDLERNGAD EEEIYHITYY
Sbjct: 61  C--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHITYY 120

Query: 121 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTD 161
           GKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVK   D
Sbjct: 121 GKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQAD 159

[Close]

BLAST of Lag0014157 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 7.0e-70
Identity = 134/173 (77.46%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MHLLSVISDF---SPSPHCFPVKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKT 60
           M LLSV SDF     SPH FP+ G RRT VCQ+   VKIL+TLAPPLIA+L+ LSP+NKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 61  PGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHIT 120
           PGCL LA+T EIERGGALF+QACIGCHDGGGNIIQPGATLF+SDLERNGAD+EEEIY IT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK   D      +P+P
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRG----WPNP 169

[Close]

BLAST of Lag0014157 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 118/152 (77.63%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 19  VKGERRTAVCQMHRQVKILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQ 78
           + G+RRT VCQ+  QVKILK L PPLIA+L+ LSP+NKT GCL LA+T EIERGGALF+Q
Sbjct: 7   LSGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQ 66

Query: 79  ACIGCHDGGGNIIQPGATLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCT 138
           +CIGCHDGGGNIIQPGATLF+SDLERNGAD+EEEIY ITY GKGRMPGFGENCKPRGQCT
Sbjct: 67  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 126

Query: 139 FGPRLQEEEIRLLAKFVKSNTDSSQQCVYPSP 171
           FGPRLQEEEIRLLAKFVK   D      +P+P
Sbjct: 127 FGPRLQEEEIRLLAKFVKIQADRG----WPNP 154

[Close]

BLAST of Lag0014157 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 188.7 bits (478), Expect = 5.7e-48
Identity = 89/125 (71.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 36  ILKTLAPPLIAVLIALSPVNKTPGCLALAQTAEIERGGALFSQACIGCHDGGGNIIQPGA 95
           +LK LAPPL AVL+A+SP+   P   +L QT +I+RG  LF++ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE--SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 96  TLFTSDLERNGADSEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 155
           TLFT DLERNG D+EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 156 KSNTD 161
           K   D
Sbjct: 164 KFQAD 166

The following BLAST results are available for this feature:

BLAST of Lag0014157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926876.1	1.1e-74	83.53	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_038877732.1	4.3e-74	80.59	cytochrome c6, chloroplastic [Benincasa hispida]	[more]
XP_023517564.1	5.7e-74	82.94	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023003546.1	1.6e-73	82.35	cytochrome c6, chloroplastic [Cucurbita maxima]	[more]
KAG6594380.1	5.9e-71	85.09	Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0014157 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	8.0e-47	71.20	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	1.5e-08	30.77	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	1.5e-08	30.77	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00115	9.6e-08	33.61	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27167 / PCC 6312) OX=195253 GN=p...	[more]
P0A3X9	1.2e-07	35.45	Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=petJ P...	[more]

BLAST of Lag0014157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG38	5.5e-75	83.53	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	8.0e-74	82.35	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A6J1CXZ2	2.4e-70	83.23	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]
A0A1S3AYD3	7.0e-70	77.46	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A0A0KPD1	2.0e-61	77.63	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]

BLAST of Lag0014157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	5.7e-48	71.20	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 65..166 e-value: 6.7E-36 score: 124.6
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 61..162
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 67..133 e-value: 3.4E-10 score: 40.1
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 67..159 score: 11.122213
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 23..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014157.1	Lag0014157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding