Lag0014127 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014127
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosome biogenesis protein
Location	chr1: 55472080 .. 55473868 (+)
RNA-Seq Expression	Lag0014127
Synteny	Lag0014127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAACCAGTCTCTCGGTAAGACTGCTTGCTTTCAGTTAAAACTTCTTATTTCCTTTTCGTCAATCCTAATTTTTCTTGTCTGGTGTCGATGAAGGTCGGATTCGAAATCTAAAGCCGAGCGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGTGAGTTTGGAACTCTGACATGAACTTGATTGTGTTCGCTCTGTAAATTGCTTTGCCGTCTTTGTTGGGAAAACTTTTGATATTTTTGACACTATTTACTTTGAAATAATCTGAGATTCTTATAGAGGGGAAAAAATATCAGGTGACATTTTAAAGAACGATGTTTGAATACAGAAATATAGATAAACAAATGACAAAGCATAGAGGTGTAGAGTAGGTTTGCCAACACTTCTCCAAATACATTGATGACATTCTGCTAATATTGTGCAAATTGCAAAAGAAATACGATGTAATTTCAAAATTGGCTGCCTAGTATCTGTGTGAAGCGAATTCAAGTTTACTTCTGTTGTTACGTACAACTTGTCGAGAGTACATTTACAAAGTGAATATCACTTTGTTTCCCGTAGATTTTTTTATTTCCGAGTAAATGAAAGGTCATTTTTTAGAATAGCAGATCAAGTTATATTTCTATACTCTTGGGATGTTCATTTATTTTTTTGAGTGTTGTTTGTGGTATCATAAACAATTAAACGTTAAAATCTGACTGCATGCAGGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAGACTATTACTAAGGTAAAAATTTTCATTCATTTACTTTGCACTTACAATTTTTCCATAGCGTCATATTTCTTCATTAGTTATGGATATTCAGTTTTGTTTTTGATGGTTTTTATTGCTATTCCATTTTTATTGTGTGGATAATTCTCGAACAATTTTCTGTTTCTTCATTAACTTTTAATTTGTCTATAGTTATAATTTTCTTGAAATGTCATGTTTAGCTCATGGCAATAAGCACAATAAACATTAAACATTAGGTTCCGCCAAGAGAACATGTATTCAAAATAGTTGGTGCCACCTAATAATAACCTATGTCAAAATTAGCCCAAGTTTTCTTGTAACGAAACATTGCAAGGTTAAGTGATCATGGAACGACATGAACACATAGTTAGAATAGAAGTGATTGGTGGGGTACTATTAAAAAACTCTTGAATTTTCATCGTCTACAATGAAAAATTGCACTGTTCTAGACTGCTTCAATCTTTCTACTGTATTCTGTTATTGCAGCTCCAATAATATGAATGATTGTATTTATGTTGTTGCCTTATATTTTTTTGTATCCATGTGTTCATTTCATATTTCTAGCGTTCTGCTAAAATTGAGTATGTTTAACAGAAGAAACTTGGAAGACGCAAAAGGGATTTGAAGGCTTTCGATCTTTCTACCCTATCAGAGTTTCTTCCTGGATTGAAGGCTCCTAAAGAAAAAACTCCTGCACCCGAGTTAAAAGTAAATAGCAAGTCTAGGCTAAAGTTTGTGTAAGTTGCTCGTTACAATTATTTGACACGTTCTATACTTTATTGTTGTTTATGTCTTGTAACGATGGATTCGTTCTATCAGATTAAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGTATTCCAGGCAGACCCATTGAGAGCTATTCATCTGCATTTAGAGAGCACACAACCAGTTGAGGAACCAAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAGGTCCAAAGGCACCGCAAGACCTTCATCCATGGAGATATGA

mRNA sequence

ATGGGCAAACCAGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAGCGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAGACTATTACTAAGAAGAAACTTGGAAGACGCAAAAGGGATTTGAAGGCTTTCGATCTTTCTACCCTATCAGAGTTTCTTCCTGGATTGAAGGCTCCTAAAGAAAAAACTCCTGCACCCGAGTTAAAAGTAAATAGCAAGTCTAGGCTAAAGTTTGTATTAAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGTATTCCAGGCAGACCCATTGAGAGCTATTCATCTGCATTTAGAGAGCACACAACCAGTTGAGGAACCAAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAGGTCCAAAGGCACCGCAAGACCTTCATCCATGGAGATATGA

Coding sequence (CDS)

ATGGGCAAACCAGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAGCGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAGACTATTACTAAGAAGAAACTTGGAAGACGCAAAAGGGATTTGAAGGCTTTCGATCTTTCTACCCTATCAGAGTTTCTTCCTGGATTGAAGGCTCCTAAAGAAAAAACTCCTGCACCCGAGTTAAAAGTAAATAGCAAGTCTAGGCTAAAGTTTGTATTAAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGTATTCCAGGCAGACCCATTGAGAGCTATTCATCTGCATTTAGAGAGCACACAACCAGTTGAGGAACCAAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAGGTCCAAAGGCACCGCAAGACCTTCATCCATGGAGATATGA

Protein sequence

MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

Homology

[Close]

BLAST of Lag0014127 vs. NCBI nr
Match: XP_023515417.1 (putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_023515418.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLST 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ 
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKKLRRRKRDLKAFDLTA 60

Query: 61  LSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHLE 120
           LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGTVLNHP FQADPL AIHLHLE
Sbjct: 61  LSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLE 120

Query: 121 STQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI 158
           STQPVEEPKKKKTN+NGSKKRKEK+SK TA+PSSME+
Sbjct: 121 STQPVEEPKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Lag0014127 vs. NCBI nr
Match: XP_022922102.1 (putative ribosome biogenesis protein slx9-like [Cucurbita moschata] >XP_022922103.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 2.9e-65
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 0


Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLST 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ 
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKKLRRRKRDLKAFDLTA 60

Query: 61  LSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHLE 120
           LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGTVLNHP FQADPL AIHLHL+
Sbjct: 61  LSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLQ 120

Query: 121 STQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI 158
           STQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Sbjct: 121 STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Lag0014127 vs. NCBI nr
Match: XP_022987345.1 (putative ribosome biogenesis protein slx9-like [Cucurbita maxima] >XP_022987346.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 138/157 (87.90%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLST 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ 
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKKLRRRKRDLKAFDLTA 60

Query: 61  LSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHLE 120
           LSEFLPGLK PK+KT   ELKVN KSRLKFVLKETKQMGTVLNHP FQADPL AIHLHLE
Sbjct: 61  LSEFLPGLKTPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLE 120

Query: 121 STQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI 158
           STQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Sbjct: 121 STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Lag0014127 vs. NCBI nr
Match: KAG6589685.1 (hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 5.0e-65
Identity = 138/157 (87.90%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLST 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITK KL RRKRDLKAFDL+ 
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTA 60

Query: 61  LSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHLE 120
           LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGTVLNHP FQADPL AIHLHLE
Sbjct: 61  LSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLE 120

Query: 121 STQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI 158
           STQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Sbjct: 121 STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Lag0014127 vs. NCBI nr
Match: XP_038900086.1 (putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900088.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900089.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900091.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKL-GRRKRDLKAFDLS 60
           MGKPVSRSDSKSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK   RRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQADPLRAIHLHL 120
           TLSEFLPGL+APK+K  A ELK+N KSRLKF+LKE KQMGTVLNHPVFQADPLRAI LHL
Sbjct: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120

Query: 121 ESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI 158
           E TQP+EEP KKKTNKNGSKKRKEK+SK + RPSSME+
Sbjct: 121 EGTQPIEEP-KKKTNKNGSKKRKEKKSKASPRPSSMEM 157

The following BLAST results are available for this feature:

BLAST of Lag0014127 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515417.1	1.6e-66	89.17	putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022922102.1	2.9e-65	87.90	putative ribosome biogenesis protein slx9-like [Cucurbita moschata] >XP_02292210...	[more]
XP_022987345.1	3.8e-65	87.90	putative ribosome biogenesis protein slx9-like [Cucurbita maxima] >XP_022987346....	[more]
KAG6589685.1	5.0e-65	87.90	hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900086.1	1.2e-61	86.08	putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087...	[more]

BLAST of Lag0014127 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028160	Ribosome biogenesis protein Slx9-like	PFAM	PF15341	SLX9	coord: 10..122 e-value: 8.9E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..157
None	No IPR available	PANTHER	PTHR31109	PROTEIN FAM207A	coord: 7..131
None	No IPR available	PANTHER	PTHR31109:SF2	PROTEIN FAM207A	coord: 7..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014127.1	Lag0014127.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0030686	90S preribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030688	preribosome, small subunit precursor