Lag0014007 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014007
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Alpha-mannosidase 3 isoform 1
Location	chr1: 54386309 .. 54386710 (+)
RNA-Seq Expression	Lag0014007
Synteny	Lag0014007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAAGATTCAATCCTCCCCATCACCAAATTACCTCTACCACTTCCAAATCTTTCTCTCTCTAATCATCTTCTTCATTCTCCTTTCCTCCTCCTCCTCCTCCGCCGCCGCTAAACCCCTTCTCCCCGCCCATCACCGGACCACCCTCCACGGCGGCGCATCCACCGCCCCATTCAAGCCAAGAGCTGCAGCCACACCCAACAAATTACAAATGGAGATCAAGAACAAGAACAAGAAGGTCACGGCCGGCTTCCGAAGCAATGCCAACAATAAGCCAACGGCTTTCTCTGTAATGCTACCAAAGGGATTTGTTCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAACCCCGAATCTGTTGCCTTTTACTGCCATCTCTCTGCCACCAATCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCAATCCTCCCCATCACCAAATTACCTCTACCACTTCCAAATCTTTCTCTCTCTAATCATCTTCTTCATTCTCCTTTCCTCCTCCTCCTCCTCCGCCGCCGCTAAACCCCTTCTCCCCGCCCATCACCGGACCACCCTCCACGGCGGCGCATCCACCGCCCCATTCAAGCCAAGAGCTGCAGCCACACCCAACAAATTACAAATGGAGATCAAGAACAAGAACAAGAAGGTCACGGCCGGCTTCCGAAGCAATGCCAACAATAAGCCAACGGCTTTCTCTGTAATGCTACCAAAGGGATTTGTTCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAACCCCGAATCTGTTGCCTTTTACTGCCATCTCTCTGCCACCAATCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCAATCCTCCCCATCACCAAATTACCTCTACCACTTCCAAATCTTTCTCTCTCTAATCATCTTCTTCATTCTCCTTTCCTCCTCCTCCTCCTCCGCCGCCGCTAAACCCCTTCTCCCCGCCCATCACCGGACCACCCTCCACGGCGGCGCATCCACCGCCCCATTCAAGCCAAGAGCTGCAGCCACACCCAACAAATTACAAATGGAGATCAAGAACAAGAACAAGAAGGTCACGGCCGGCTTCCGAAGCAATGCCAACAATAAGCCAACGGCTTTCTCTGTAATGCTACCAAAGGGATTTGTTCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAACCCCGAATCTGTTGCCTTTTACTGCCATCTCTCTGCCACCAATCCTTGA

Protein sequence

MGFKIQSSPSPNYLYHFQIFLSLIIFFILLSSSSSSAAAKPLLPAHHRTTLHGGASTAPFKPRAAATPNKLQMEIKNKNKKVTAGFRSNANNKPTAFSVMLPKGFVPPSGSSPCHNENPESVAFYCHLSATNP

Homology

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BLAST of Lag0014007 vs. NCBI nr
Match: KAG7026467.1 (hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-33
Identity = 88/137 (64.23%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 1   MGFKIQSSPSPNYLYHFQIFLSLIIFFILLSSSSSS--AAAKPLLPAH--HRTTLHGGAS 60
           MGFKIQ SPSPNYLY+  I LSLI+FF+L+SSSS+      +P L AH  HRTTLH GA 
Sbjct: 1   MGFKIQPSPSPNYLYYLSISLSLILFFLLISSSSAQPLPLRRPNLAAHHRHRTTLHVGAP 60

Query: 61  TAPFKPRAAATPNKLQMEIKNKNKKVTAGFRSNANNKPTAFSVMLPKGFVPPSGSSPCHN 120
           T  F      T  KLQME   K KK          NK TAFS MLPKGFVPPSGSSPCHN
Sbjct: 61  TTTF------TAKKLQMETNKKKKK----------NKATAFSAMLPKGFVPPSGSSPCHN 120

Query: 121 ENPESVAFYCHLSATNP 134
           ENPE VAFYCHLSATNP
Sbjct: 121 ENPEFVAFYCHLSATNP 121

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BLAST of Lag0014007 vs. NCBI nr
Match: KAG6594469.1 (hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 6.2e-32
Identity = 89/141 (63.12%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 1   MGFKIQSSPSPNYLYHFQIFLSLIIFFILLSSSSSSAAAKPL------LPAH--HRTTLH 60
           MGFKIQ SPSPNYLY+  I LSLI+FF+L+S SS    A+PL      L AH  HRTTLH
Sbjct: 1   MGFKIQPSPSPNYLYYLSISLSLILFFLLISFSS----AQPLPLRRLNLAAHHRHRTTLH 60

Query: 61  GGASTAPFKPRAAATPNKLQMEIKNKNKKVTAGFRSNANNKPTAFSVMLPKGFVPPSGSS 120
            GA T  F      T  KLQME   K KK          NK TAFS MLPKGFVPPSGSS
Sbjct: 61  VGAPTTTF------TAKKLQMETNKKKKK----------NKTTAFSAMLPKGFVPPSGSS 120

Query: 121 PCHNENPESVAFYCHLSATNP 134
           PCHNENPE VAFYCHLSATNP
Sbjct: 121 PCHNENPEFVAFYCHLSATNP 121

[Close]

BLAST of Lag0014007 vs. NCBI nr
Match: KAG6581427.1 (hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-27
Identity = 88/150 (58.67%), Postives = 99/150 (66.00%), Query Frame = 0


Query: 1   MGFKIQSSPSPNYLYHFQIFLSLIIFFILLSSSSSSAAAKPLLPA-------HHRTTLHG 60
           MGFKIQS         FQI +SLI+FF+L+SSSSS+     LLP+        HRTTLHG
Sbjct: 1   MGFKIQSP-------FFQISISLILFFLLISSSSSA----KLLPSRSDVQLHRHRTTLHG 60

Query: 61  GASTAPF--KPRAAA---TPNKLQMEIKNKN----KKVTAGFRSNA--NNKPTAFSVMLP 120
           GA T PF   P+        NKLQM IKNK+    KK TA F SN   NNK TAFSVMLP
Sbjct: 61  GAPTTPFLLNPQREVDQYKANKLQMAIKNKSKKNKKKTTARFESNGNNNNKGTAFSVMLP 120

Query: 121 KGFVPPSGSSPCHNENPE--SVAFYCHLSA 131
           KGFVPPSGSSPCHN++P+  S AFYCHLSA
Sbjct: 121 KGFVPPSGSSPCHNQSPQSSSPAFYCHLSA 139

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BLAST of Lag0014007 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_004373 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-21
Identity = 83/159 (52.20%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 1   MGFKIQSS-PSPNYLYHFQIFLSLIIFFILLSSSSSSAAAKPLLPAH------HRTT-LH 60
           MGFKI SS  SPNYL  FQI LSLI+FF+L  ++SS    KP LP H      HRTT +H
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSS---FKP-LPGHEPSNVRHRTTVVH 60

Query: 61  GGASTA-------PFKPRAAATPNKLQMEIK-NKNKK---------VTAGFRS----NAN 120
           G A T        P         NKL+MEIK NK  K         +  GF+S    N N
Sbjct: 61  GSAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKN 120

Query: 121 NKPTAFSVMLPKGFVPPSGSSPCHNENPE--SVAFYCHL 129
           +K +AFS MLPKGFVPPSGSSPCHNE+P+  S+AFYCHL
Sbjct: 121 DKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of Lag0014007 vs. NCBI nr
Match: KAA0052545.1 (hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK13280.1 hypothetical protein E5676_scaffold255G008990 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 81/158 (51.27%), Postives = 93/158 (58.86%), Query Frame = 0


Query: 1   MGFKIQSS----PSPNYLYHFQIFLSLIIFFILLSSSSSSAAAKPL----LPAHHRTT-- 60
           MGFKI SS     SPNYL  FQI LSLI+FF++ S++SS    KPL       HHR T  
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSS---FKPLPHESNNVHHRATAV 60

Query: 61  LHGGASTAPF------KPRAAATPNKLQMEIK-----NKNKK---VTAGFRSNANNKP-- 120
           +HG A                    KL+MEIK      K KK   V  GF+S+ NNK   
Sbjct: 61  VHGSAMITTLGREVDHHHHREYRSKKLEMEIKINKISKKMKKKGVVPGGFKSSNNNKKND 120

Query: 121 --TAFSVMLPKGFVPPSGSSPCHNENPE--SVAFYCHL 129
             +AFSVMLPKGFVPPSGSSPCHNENP+  S+AFYCHL
Sbjct: 121 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHL 155

The following BLAST results are available for this feature:

BLAST of Lag0014007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026467.1	2.5e-33	64.23	hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594469.1	6.2e-32	63.12	hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6581427.1	6.0e-27	58.67	hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49393.1	4.9e-21	52.20	hypothetical protein Csa_004373 [Cucumis sativus]	[more]
KAA0052545.1	2.4e-20	51.27	hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK132...	[more]

BLAST of Lag0014007 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014007.1	Lag0014007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane