Lag0013950 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013950
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function, DUF584
Locationchr1: 53958973 .. 53959380 (+)
RNA-Seq ExpressionLag0013950
SyntenyLag0013950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAGAATTCCTCGAATCCGACATCGTTTTCTCCGATCACCACCACCACCACCGCCTCTTCCACCCTTCACTCGACTACACCCAAATCCTCCTCACAACTCATCGGAACTCCAAAAACGACGACGACGACAACATCAACAACAACAACAACAATGATTTCGCCGCCTCTCTCCCCGTCAAAATCCCAGAAACCGTTTTCCGTTGCAGCTCCGACGCGGAGGAGCTGGACGACGAATGGGACAGTGAAGACAGCATAGTGCCACCGCACGTGATCATCGGGCGCCGCGTGGCCGGAAAAATGGCCTTCTCCGTCTGCACCGGCAACGGCAGGACGCTTAAAGGAAGAGATTTAAGCCAAGTTCGAAATTCAATTCTCAGAATGACCGGATTCCTCGAAACTTGA

mRNA sequence

ATGGCTCAAGAATTCCTCGAATCCGACATCGTTTTCTCCGATCACCACCACCACCACCGCCTCTTCCACCCTTCACTCGACTACACCCAAATCCTCCTCACAACTCATCGGAACTCCAAAAACGACGACGACGACAACATCAACAACAACAACAACAATGATTTCGCCGCCTCTCTCCCCGTCAAAATCCCAGAAACCGTTTTCCGTTGCAGCTCCGACGCGGAGGAGCTGGACGACGAATGGGACAGTGAAGACAGCATAGTGCCACCGCACGTGATCATCGGGCGCCGCGTGGCCGGAAAAATGGCCTTCTCCGTCTGCACCGGCAACGGCAGGACGCTTAAAGGAAGAGATTTAAGCCAAGTTCGAAATTCAATTCTCAGAATGACCGGATTCCTCGAAACTTGA

Coding sequence (CDS)

ATGGCTCAAGAATTCCTCGAATCCGACATCGTTTTCTCCGATCACCACCACCACCACCGCCTCTTCCACCCTTCACTCGACTACACCCAAATCCTCCTCACAACTCATCGGAACTCCAAAAACGACGACGACGACAACATCAACAACAACAACAACAATGATTTCGCCGCCTCTCTCCCCGTCAAAATCCCAGAAACCGTTTTCCGTTGCAGCTCCGACGCGGAGGAGCTGGACGACGAATGGGACAGTGAAGACAGCATAGTGCCACCGCACGTGATCATCGGGCGCCGCGTGGCCGGAAAAATGGCCTTCTCCGTCTGCACCGGCAACGGCAGGACGCTTAAAGGAAGAGATTTAAGCCAAGTTCGAAATTCAATTCTCAGAATGACCGGATTCCTCGAAACTTGA

Protein sequence

MAQEFLESDIVFSDHHHHHRLFHPSLDYTQILLTTHRNSKNDDDDNINNNNNNDFAASLPVKIPETVFRCSSDAEELDDEWDSEDSIVPPHVIIGRRVAGKMAFSVCTGNGRTLKGRDLSQVRNSILRMTGFLET
Homology
BLAST of Lag0013950 vs. NCBI nr
Match: XP_038881487.1 (uncharacterized protein LOC120073009 [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 5.0e-53
Identity = 115/142 (80.99%), Postives = 123/142 (86.62%), Query Frame = 0

Query: 1   MAQEFLESDIVFSDHHHHHR---LFHPSLDYTQILLTTH---RNSKNDDDDNINNNNNND 60
           MA+EF ESDIVF+DHH   R    FHPSLDYTQIL+TTH   RN+ NDD D+ NNNNN D
Sbjct: 1   MAEEFHESDIVFADHHRRQRRRHFFHPSLDYTQILVTTHGNSRNNTNDDGDDNNNNNNKD 60

Query: 61  FAASLPVKIPETVFRCSSDAEELDDEWDSED-SIVPPHVIIGRRVAGKMAFSVCTGNGRT 120
           F ASLPVKIPETVFR +SD EELD+EWDSED +IVPPHVIIGRRVAGKMAFSVCTGNGRT
Sbjct: 61  FIASLPVKIPETVFRYTSDMEELDEEWDSEDNNIVPPHVIIGRRVAGKMAFSVCTGNGRT 120

Query: 121 LKGRDLSQVRNSILRMTGFLET 136
           LKGRDLSQVRNSILRMTGFLET
Sbjct: 121 LKGRDLSQVRNSILRMTGFLET 142

BLAST of Lag0013950 vs. NCBI nr
Match: XP_023003525.1 (uncharacterized protein LOC111497106 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 1   MAQEFLESDIVFSDHHHHHRLFHPSLDYTQILLTTHRNSKNDDDDNINNNNNNDFAASLP 60
           MA+EF ESDI+FSD HHH RLFH SLD+TQIL+T HRNSK        NNN +  A+SLP
Sbjct: 1   MAEEFHESDIIFSD-HHHRRLFHSSLDHTQILVTPHRNSK--------NNNKHSAASSLP 60

Query: 61  VKIPETVFRCSSDAEELDDEWDSEDSIVPPHVIIGRRVAGKMAFSVCTGNGRTLKGRDLS 120
           +KIPETV R +SDAEELD+EWDS+D+IVPPH+II RR+AGKMAFSVCTGNGRTLKGRDL+
Sbjct: 61  IKIPETVIRFTSDAEELDEEWDSDDNIVPPHMIIRRRLAGKMAFSVCTGNGRTLKGRDLN 120

Query: 121 QVRNSILRMTGFLET 136
            VRNSILRMTGFLET
Sbjct: 121 HVRNSILRMTGFLET 126

BLAST of Lag0013950 vs. NCBI nr
Match: XP_004134921.2 (uncharacterized protein LOC101217175 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 105/153 (68.63%), Postives = 126/153 (82.35%), Query Frame = 0

Query: 1   MAQEFLESDIVFSDHHHHH-----RLFHPSLDYTQILL-TTHRNSKNDDDDNI------- 60
           MA+EF ESDI+F+DHHHH+     R FHPSLD+ QILL TTHRN++N+ +D+        
Sbjct: 1   MAEEFHESDIIFADHHHHYRRRRRRFFHPSLDFAQILLTTTHRNTRNNTNDDSDSDSDRN 60

Query: 61  ---NNNNNNDFAASLPVKIPETVFRCSSDAEELDDEWDSED--SIVPPHVIIGRRVAGKM 120
              ++NN+ DFAASLPVKIPETVFR SSD EELD+EW+SED  +IVPPHVIIG+R++GKM
Sbjct: 61  HHHHHNNSKDFAASLPVKIPETVFRYSSDMEELDEEWNSEDNNNIVPPHVIIGQRLSGKM 120

Query: 121 AFSVCTGNGRTLKGRDLSQVRNSILRMTGFLET 136
           AFSV +GNGRTLKGRDLS+VRNSILRMTGFLET
Sbjct: 121 AFSVRSGNGRTLKGRDLSEVRNSILRMTGFLET 153

BLAST of Lag0013950 vs. NCBI nr
Match: XP_008439696.1 (PREDICTED: uncharacterized protein LOC103484414 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 109/153 (71.24%), Postives = 122/153 (79.74%), Query Frame = 0

Query: 1   MAQEFLESDIVFSDHH---HHHRLFHPSLDYTQILLTT-----HRNSKNDDDD------- 60
           MA+EF ESDI+F+DHH      R FHPSLD+ QILLTT      RN+ NDD+D       
Sbjct: 1   MAEEFHESDIIFADHHRRRRRRRFFHPSLDFAQILLTTTNHRNPRNNTNDDNDSDSDHND 60

Query: 61  -NINNNNNNDFAASLPVKIPETVFRCSSDAEELDDEWDSED--SIVPPHVIIGRRVAGKM 120
            + +NNNN DFAASLPVKIPETVFR SSD EELD+EW+SED  +IVPPHVIIGRRVAGKM
Sbjct: 61  HHHHNNNNKDFAASLPVKIPETVFRYSSDMEELDEEWNSEDNNNIVPPHVIIGRRVAGKM 120

Query: 121 AFSVCTGNGRTLKGRDLSQVRNSILRMTGFLET 136
           AFSV +GNGRTLKGRDLS+VRNSILRMTGFLET
Sbjct: 121 AFSVRSGNGRTLKGRDLSEVRNSILRMTGFLET 153

BLAST of Lag0013950 vs. NCBI nr
Match: XP_023518163.1 (uncharacterized protein LOC111781708 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 98/137 (71.53%), Postives = 114/137 (83.21%), Query Frame = 0

Query: 1   MAQEFLESDIVFSDHHHHH--RLFHPSLDYTQILLTTHRNSKNDDDDNINNNNNNDFAAS 60
           MA+EF ESDI+FSDHHHHH  RL H SLD++QIL+T HRNSK        NN+ +  A+S
Sbjct: 1   MAEEFHESDIIFSDHHHHHRRRLVHSSLDHSQILVTPHRNSK--------NNHKHSAASS 60

Query: 61  LPVKIPETVFRCSSDAEELDDEWDSEDSIVPPHVIIGRRVAGKMAFSVCTGNGRTLKGRD 120
           LP+KIPETV R +SD  ELD+EWDS+D+IVPPH+II RR+AGKMAFSVCTG+GRTLKGRD
Sbjct: 61  LPIKIPETVIRLTSDMGELDEEWDSDDNIVPPHMIIRRRLAGKMAFSVCTGDGRTLKGRD 120

Query: 121 LSQVRNSILRMTGFLET 136
           LS VRNSILRMTGFLET
Sbjct: 121 LSHVRNSILRMTGFLET 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881487.15.0e-5380.99uncharacterized protein LOC120073009 [Benincasa hispida][more]
XP_023003525.12.4e-4774.81uncharacterized protein LOC111497106 [Cucurbita maxima][more]
XP_004134921.22.6e-4668.63uncharacterized protein LOC101217175 [Cucumis sativus][more]
XP_008439696.12.6e-4671.24PREDICTED: uncharacterized protein LOC103484414 [Cucumis melo][more]
XP_023518163.11.7e-4571.53uncharacterized protein LOC111781708 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 11..134
e-value: 3.0E-28
score: 99.7
NoneNo IPR availablePANTHERPTHR33083EXPRESSED PROTEINcoord: 1..134
NoneNo IPR availablePANTHERPTHR33083:SF49OS01G0748300 PROTEINcoord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013950.1Lag0013950.1mRNA