Lag0013847 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013847
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glycogen phosphorylase 1-like
Location	chr1: 53202736 .. 53203206 (-)
RNA-Seq Expression	Lag0013847
Synteny	Lag0013847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCGCCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTCCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAGTTCTTCATCGCCACCAAAATCCCCTGCTATCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAACCTTCAATTTTCCCCTTTCTCTCTCTTCATCTTCAATGGGGCTTCTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCTAAAACCTCTTGGCGGTCCAAATGCCCTTTTCAACACCCTCCGGCATTGATTCTCGCTAAAGGCGTCGACGCTGCTCAGTGTCAGTGGGGCGATGAACAGAGGAGAAATTACGTGAGAATGAGGCTCAGAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATTTATTACTGTTTTCTCTTCTGCTATGGAATCCATTGTCTTCCACTGATTGA

mRNA sequence

ATGGAAGAATCGCCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTCCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAGTTCTTCATCGCCACCAAAATCCCCTGCTATCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAACCTTCAATTTTCCCCTTTCTCTCTCTTCATCTTCAATGGGGCTTCTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCTAAAACCTCTTGGCGGTCCAAATGCCCTTTTCAACACCCTCCGGCATTGATTCTCGCTAAAGGCGTCGACGCTGCTCAGTGTCAGTGGGGCGATGAACAGAGGAGAAATTACGTGAGAATGAGGCTCAGAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATTTATTACTGTTTTCTCTTCTGCTATGGAATCCATTGTCTTCCACTGATTGA

Coding sequence (CDS)

ATGGAAGAATCGCCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTCCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAGTTCTTCATCGCCACCAAAATCCCCTGCTATCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAACCTTCAATTTTCCCCTTTCTCTCTCTTCATCTTCAATGGGGCTTCTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCTAAAACCTCTTGGCGGTCCAAATGCCCTTTTCAACACCCTCCGGCATTGATTCTCGCTAAAGGCGTCGACGCTGCTCAGTGTCAGTGGGGCGATGAACAGAGGAGAAATTACGTGAGAATGAGGCTCAGAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATTTATTACTGTTTTCTCTTCTGCTATGGAATCCATTGTCTTCCACTGATTGA

Protein sequence

MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSLHLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMRLRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD

Homology

[Close]

BLAST of Lag0013847 vs. NCBI nr
Match: KAG6594585.1 (hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026555.1 hypothetical protein SDJN02_10557, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
           MEESPWPQKLQ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLCPKPSIFPFLSL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFLSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMR 120
           HLQWGFSLFLKRLSRF LPKTSWRSKCPFQHPP LILAKGVD A  QWGDEQRR YVRMR
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPA--QWGDEQRRTYVRMR 120

Query: 121 LRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD 157
           LRRKRLGSDVHPLIPI+IPN+LLFSLLLWNPLSSTD
Sbjct: 121 LRRKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154

[Close]

BLAST of Lag0013847 vs. NCBI nr
Match: XP_023517994.1 (uncharacterized protein LOC111781559 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 5.5e-80
Identity = 144/156 (92.31%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
           MEESPWPQKLQ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLCPKPSIFPFLSL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFLSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMR 120
           HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPP  ILAKGV+ A  QWGDEQRR YVRMR
Sbjct: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPPSILAKGVNPA--QWGDEQRRTYVRMR 120

Query: 121 LRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD 157
           LRRKRLGSDVHPLIPI+IPN+LLFSLLLWNPLSSTD
Sbjct: 121 LRRKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154

[Close]

BLAST of Lag0013847 vs. NCBI nr
Match: XP_022926954.1 (uncharacterized protein LOC111433914 [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 9.4e-80
Identity = 144/156 (92.31%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
           MEESPWPQKLQ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLCPKPSIFPF SL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMR 120
           HLQWGFSLFLKRLSRF LPKTSWRSKCPFQHPP LILAKGVD A  QWGDEQRR YVRMR
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPA--QWGDEQRRTYVRMR 120

Query: 121 LRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD 157
           LRRKRLGSDVHPLIPI+IPN+LLFSLLLWNPLSSTD
Sbjct: 121 LRRKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154

[Close]

BLAST of Lag0013847 vs. NCBI nr
Match: XP_038883097.1 (uncharacterized protein LOC120074151 [Benincasa hispida])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
           MEE+PWPQKLQALTHILLCPTTAPPLASQ+ IATKIPCYLNWDYPPLLCPK SIFPFLSL
Sbjct: 11  MEETPWPQKLQALTHILLCPTTAPPLASQYLIATKIPCYLNWDYPPLLCPKSSIFPFLSL 70

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMR 120
           HLQWGFSLFLKRLSRFGLPKTSWRSKCP+Q PP LILAKGV +A  QWGDEQR+NYVRMR
Sbjct: 71  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVHSA--QWGDEQRKNYVRMR 130

Query: 121 LRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD 157
           LRRKRL SDVHPLIPIMIPN+LLFSLLLWNP SS+D
Sbjct: 131 LRRKRLVSDVHPLIPIMIPNMLLFSLLLWNPFSSSD 164

[Close]

BLAST of Lag0013847 vs. NCBI nr
Match: XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 140/156 (89.74%), Postives = 145/156 (92.95%), Query Frame = 0


Query: 1   MEESPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
           MEE+PWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPK SIFPFLSL
Sbjct: 12  MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPFQHPPALILAKGVDAAQCQWGDEQRRNYVRMR 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCP+Q PP LILAKGV  A  QW DEQR NY RMR
Sbjct: 72  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPA--QWDDEQRINYARMR 131

Query: 121 LRRKRLGSDVHPLIPIMIPNLLLFSLLLWNPLSSTD 157
           LRRKRLGSDVHPLIPIMIPN+LLF+LLLWNP SSTD
Sbjct: 132 LRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165

The following BLAST results are available for this feature:

BLAST of Lag0013847 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594585.1	1.4e-80	92.95	hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517994.1	5.5e-80	92.31	uncharacterized protein LOC111781559 [Cucurbita pepo subsp. pepo]	[more]
XP_022926954.1	9.4e-80	92.31	uncharacterized protein LOC111433914 [Cucurbita moschata]	[more]
XP_038883097.1	1.7e-76	89.74	uncharacterized protein LOC120074151 [Benincasa hispida]	[more]
XP_004134687.2	2.8e-76	89.74	uncharacterized protein LOC101221431 [Cucumis sativus]	[more]

BLAST of Lag0013847 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38364	OSJNBA0022H21.9 PROTEIN	coord: 3..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013847.1	Lag0013847.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane