Lag0013794 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013794
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ctenidin-3-like
Location	chr1: 52801713 .. 52802117 (+)
RNA-Seq Expression	Lag0013794
Synteny	Lag0013794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACTCCATGTCCATTTCCACTTTCCTCATCGCCATTCTCCTTCTCTCGCCGGCCTTATCCCTCGCCGCCGGCCGCAACGCCGGCGCCGGCTTCGATGGGATTTTCGGACCCGGTAGCGGATTTGACGACATACCCGGCTTTGGGAAGGGCTGGGACAAGGGCATCGTCGGCGGTGGATACGGCGGCGGCTACGGCGGCCCCAAAGGCGGCTACGGGAAGGGCGGCATCATAAGGAACACTGTGGTCTGTAAGGAGAAGGGTCCTTGTTATAATAAGAAGGTGACTTGTCCGGCGAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTTGGCGGCGGCGGCGGCGGCGGCGGCTGCAGCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

mRNA sequence

ATGAATCACTCCATGTCCATTTCCACTTTCCTCATCGCCATTCTCCTTCTCTCGCCGGCCTTATCCCTCGCCGCCGGCCGCAACGCCGGCGCCGGCTTCGATGGGATTTTCGGACCCGGTAGCGGATTTGACGACATACCCGGCTTTGGGAAGGGCTGGGACAAGGGCATCGTCGGCGGTGGATACGGCGGCGGCTACGGCGGCCCCAAAGGCGGCTACGGGAAGGGCGGCATCATAAGGAACACTGTGGTCTGTAAGGAGAAGGGTCCTTGTTATAATAAGAAGGTGACTTGTCCGGCGAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTTGGCGGCGGCGGCGGCGGCGGCGGCTGCAGCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

Coding sequence (CDS)

ATGAATCACTCCATGTCCATTTCCACTTTCCTCATCGCCATTCTCCTTCTCTCGCCGGCCTTATCCCTCGCCGCCGGCCGCAACGCCGGCGCCGGCTTCGATGGGATTTTCGGACCCGGTAGCGGATTTGACGACATACCCGGCTTTGGGAAGGGCTGGGACAAGGGCATCGTCGGCGGTGGATACGGCGGCGGCTACGGCGGCCCCAAAGGCGGCTACGGGAAGGGCGGCATCATAAGGAACACTGTGGTCTGTAAGGAGAAGGGTCCTTGTTATAATAAGAAGGTGACTTGTCCGGCGAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTTGGCGGCGGCGGCGGCGGCGGCGGCTGCAGCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

Protein sequence

MNHSMSISTFLIAILLLSPALSLAAGRNAGAGFDGIFGPGSGFDDIPGFGKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCSIDCTKKCIGYC

Homology

[Close]

BLAST of Lag0013794 vs. NCBI nr
Match: XP_022926656.1 (neuropeptide-like protein 31 [Cucurbita moschata] >KAG6594623.1 hypothetical protein SDJN03_11176, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026592.1 hypothetical protein SDJN02_10594, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 119/135 (88.15%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MNHSMSISTFLIAILLLSPALSLAAGRNA-GAGFDGIFGPGSGFDDIPGFGKGWDKGIVG 60
           MN  M+IST L+A+LLLSPA SLA  RN+ G GFDG+FGPG+GFDDIPGFGKGWDKGI+G
Sbjct: 1   MNRHMAISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIG 60

Query: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120
           GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG
Sbjct: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120

Query: 121 GGCSIDCTKKCIGYC 135
           GGC+IDCTKKCIGYC
Sbjct: 121 GGCTIDCTKKCIGYC 135

[Close]

BLAST of Lag0013794 vs. NCBI nr
Match: XP_023517828.1 (cold shock domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 9.2e-60
Identity = 117/135 (86.67%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MNHSMSISTFLIAILLLSPALSLAAGRNA-GAGFDGIFGPGSGFDDIPGFGKGWDKGIVG 60
           MN  M+IS  L+A+LLLSP  SLA  RN+ G GFDG+FGPG+GFDDIPGFGKGWDKGI+G
Sbjct: 39  MNRHMAISALLVAVLLLSPPFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIG 98

Query: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120
           GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG
Sbjct: 99  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 158

Query: 121 GGCSIDCTKKCIGYC 135
           GGC+IDCTKKCIGYC
Sbjct: 159 GGCTIDCTKKCIGYC 173

[Close]

BLAST of Lag0013794 vs. NCBI nr
Match: XP_023003427.1 (eggshell protein-like [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MNHSMSISTFLIAILLLSPALSLAAGRNAGAGFDGIFGPGSGFDDIPGFGKGWDKGIVGG 60
           MN  M+IST L+ + LLSPA S A  RN+G GFDG+F PG+GFDDIPGFGKGWDKGI+GG
Sbjct: 1   MNRHMAISTLLV-VFLLSPAFSFATARNSGGGFDGMFEPGNGFDDIPGFGKGWDKGIIGG 60

Query: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120
           GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG
Sbjct: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120

Query: 121 GCSIDCTKKCIGYC 135
           GC+IDCTKKCIGYC
Sbjct: 121 GCTIDCTKKCIGYC 133

[Close]

BLAST of Lag0013794 vs. NCBI nr
Match: XP_004134728.1 (ctenidin-3 [Cucumis sativus] >KGN49190.1 hypothetical protein Csa_003176 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MNHSMSISTFLIAILLLSPALSLAAGRNAGAGFDGIFGPGSGFDDIPGFGKGWDKGIVGG 60
           MN  + I  FLIAILLLSP++SLA  R  G GFDG+FGPG+GF DIPGFGKGWDKGI+GG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDG-GFDGMFGPGNGFGDIPGFGKGWDKGIIGG 60

Query: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120
           GYGGGYGGPKGGYGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGG
Sbjct: 61  GYGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGG 120

Query: 121 GCSIDCTKKCIGYC 135
           GC+IDCTKKCIGYC
Sbjct: 121 GCTIDCTKKCIGYC 133

[Close]

BLAST of Lag0013794 vs. NCBI nr
Match: XP_008439905.1 (PREDICTED: ctenidin-3-like [Cucumis melo] >KAA0052719.1 ctenidin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 4.0e-55
Identity = 113/134 (84.33%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MNHSMSISTFLIAILLLSPALSLAAGRNAGAGFDGIFGPGSGFDDIPGFGKGWDKGIVGG 60
           MN  + I  FLIAILLLSP+LSLA  R  G GF G+FGPG+GFDDIPGFGKGWDKGIVGG
Sbjct: 1   MNFFIPIFPFLIAILLLSPSLSLATSRKDG-GFGGMFGPGNGFDDIPGFGKGWDKGIVGG 60

Query: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120
           GYGGGYGGPKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKG+GGGGGGG
Sbjct: 61  GYGGGYGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGG 120

Query: 121 GCSIDCTKKCIGYC 135
           GC+IDC KKCIGYC
Sbjct: 121 GCTIDCAKKCIGYC 133

The following BLAST results are available for this feature:

BLAST of Lag0013794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926656.1	6.4e-61	88.15	neuropeptide-like protein 31 [Cucurbita moschata] >KAG6594623.1 hypothetical pro...	[more]
XP_023517828.1	9.2e-60	86.67	cold shock domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003427.1	1.3e-58	85.82	eggshell protein-like [Cucurbita maxima]	[more]
XP_004134728.1	1.1e-55	84.33	ctenidin-3 [Cucumis sativus] >KGN49190.1 hypothetical protein Csa_003176 [Cucumi...	[more]
XP_008439905.1	4.0e-55	84.33	PREDICTED: ctenidin-3-like [Cucumis melo] >KAA0052719.1 ctenidin-3-like [Cucumis...	[more]

BLAST of Lag0013794 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34789:SF4	SUBFAMILY NOT NAMED	coord: 7..134
None	No IPR available	PANTHER	PTHR34789	EXPRESSED PROTEIN	coord: 7..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013794.1	Lag0013794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007218	neuropeptide signaling pathway
molecular_function	GO:0004386	helicase activity