Lag0013745 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013745
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr1: 52417224 .. 52418543 (+)
RNA-Seq ExpressionLag0013745
SyntenyLag0013745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA

mRNA sequence

ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA

Coding sequence (CDS)

ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA

Protein sequence

MASSSSSSTAADDRLPPFPITSTVSSPIPVTTLSSPLPTPVTSHRLPLNTSTATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSFQPAISTKSVVLSLFRCH
Homology
BLAST of Lag0013745 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-85
Identity = 181/350 (51.71%), Postives = 235/350 (67.14%), Query Frame = 0

Query: 81  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAF 140
           Q+ P   +FL   Q  NPF      S +PFPTL  PLN+KL D+N+LLWKNQLLN +IA 
Sbjct: 2   QFPPPTPNFLA--QPPNPF------SANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIAN 61

Query: 141 DMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA 200
            +  +++GT  PPP+FLD  Q Q NP +  W++ NR LM WIYSSL+E+K+GE++   + 
Sbjct: 62  GLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETT 121

Query: 201 YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYR 260
           ++IW  L  VY+S +TARIMGL+++LQ +RKDG SV+QYLA+IK++ADKF+A+GEPLSYR
Sbjct: 122 HDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR 181

Query: 261 DHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANL 320
           DHL ++L+GLG+EYN FVTSI NR D PSL DVRSLLLAYEARL+KQ +VD LN+ QANL
Sbjct: 182 DHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANL 241

Query: 321 ANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR 380
            N S+  N KR            P P   FP      FP    +     S+LG+PQS   
Sbjct: 242 VNLSLQHNSKR------------PPPKFSFPNHYKHSFPNSPISAAQSQSILGKPQS--- 301

Query: 381 PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF 423
             +WP   + ++ QCQICGKLGH A VCY+R N  Y      +ASP + +
Sbjct: 302 VHKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYH-----NASPQALY 323

BLAST of Lag0013745 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-54
Identity = 141/339 (41.59%), Postives = 185/339 (54.57%), Query Frame = 0

Query: 80  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIA 139
           F   PA  S      N NP  P +     P P+L+  L+IKL ++N LL K+QLLN IIA
Sbjct: 4   FPPTPASNSNTTTNNNQNP-APQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVIIA 63

Query: 140 FDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSS 199
             +E+FI+     PPK+LD A  QVNP+F  W +LN+ +MSWIYSSL    +G+I+  S+
Sbjct: 64  NGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYST 123

Query: 200 AYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSY 259
           A +IW  L   YES S A +M L SQLQ+I+K  + +++YL+++K V D+F+ IGEPLSY
Sbjct: 124 ARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSY 183

Query: 260 RDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQAN 319
           RD L  ILEGL  EY+ FVTSI NR+DRPSL +V SLL  YE RL +++   +LN  QAN
Sbjct: 184 RDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN 243

Query: 320 LANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP 379
                                                                    R P
Sbjct: 244 --------------------------------------------------------PRQP 285

Query: 380 ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS 418
             N + PQCQICGK GHIAL  Y+R N  Y  P+  +A+
Sbjct: 304 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAA 285

BLAST of Lag0013745 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 216.5 bits (550), Expect = 4.7e-52
Identity = 113/262 (43.13%), Postives = 165/262 (62.98%), Query Frame = 0

Query: 51  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPF 110
           S +TP  P  P   P P    PNP                      NP   +  P P+  
Sbjct: 8   SASTPPAPPPPTSNPLPSSSIPNP----------------------NPQILNTSPLPN-M 67

Query: 111 PTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTF 170
           P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  Q Q NP+F  
Sbjct: 68  PSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHS 127

Query: 171 WQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIR 230
           WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+
Sbjct: 128 WQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIK 187

Query: 231 KDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSL 290
           K+GL+   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  RPS+
Sbjct: 188 KEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 246

Query: 291 ADVRSLLLAYEARLEKQTSVDS 312
            +V SLLL+Y+ARLE+Q++ D+
Sbjct: 248 EEVHSLLLSYDARLERQSATDT 246

BLAST of Lag0013745 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 213.8 bits (543), Expect = 3.0e-51
Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 0

Query: 101 PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMA 160
           P + P P   P++  P  IKL   NYL+WKNQLLN IIA  +E+FI+G+ P PP+F D A
Sbjct: 37  PPLPPLPI-LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPA 96

Query: 161 QSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIM 220
           +  VN ++  WQ+ NR +MSWIY+SL +  +G+I+G +SA+EIWE L  +Y SSS A+I 
Sbjct: 97  RQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKIT 156

Query: 221 GLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS 280
            LR++LQ +RKDGL+  +Y+ + K++ +  +A+GEP+S +DHL Y+  GL  EYN FVTS
Sbjct: 157 ELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTS 216

Query: 281 IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-- 340
           I  R D   L ++ SLLL+YE RLE Q +   L+ +QANLA+ ++  N+K ++ N  N  
Sbjct: 217 ITKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLNI--NKKPYRPNFSNPV 276

Query: 341 ---TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ 370
              T++   R +  F    P       PS+LG+PQ
Sbjct: 277 GHFTQNFQNR-TQQFQSHPPNSNQFQ-PSILGKPQ 306

BLAST of Lag0013745 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-49
Identity = 129/351 (36.75%), Postives = 185/351 (52.71%), Query Frame = 0

Query: 97  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFI 156
           NP   S  P P+P           P++  PL +KL D NY++WK QLLN +IA  +E F+
Sbjct: 21  NPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFL 80

Query: 157 NGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEH 216
           +G+   PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE 
Sbjct: 81  DGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEA 140

Query: 217 LRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYI 276
           L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  ++IGEP++Y DHL Y 
Sbjct: 141 LERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYF 200

Query: 277 LEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMS 336
           L GLG +YNPFVTSIQ++  RPS+ +  S            TS+      +    N   +
Sbjct: 201 LGGLGRDYNPFVTSIQSQAIRPSVEEPTS-----------PTSLTRKPKFKNPSTNSFPN 260

Query: 337 SNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP 396
           SN     + Q    S +P PSSP P                                 RP
Sbjct: 261 SNSYSHPRGQNRNPSYSPNPSSPKP---------------------------------RP 320

Query: 397 QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS 431
           +CQIC K GH A  CY+  N  YQ P       N+  +P+    P++ST S
Sbjct: 321 RCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN----PSLSTSS 323

BLAST of Lag0013745 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-21
Identity = 75/312 (24.04%), Postives = 145/312 (46.47%), Query Frame = 0

Query: 120 KLTDSNYLLWKNQLLNHIIAFDMENFING--TPPPPKFLDMAQSQVNPQFTFWQKLNRTL 179
           KLT +NYL+W  Q+      +++  F++G  T PP      A  +VNP +T W++ ++ +
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 180 MSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQ 239
            S +  +++      +   ++A +IWE LR +Y + S   +  LR+QL++  K   ++  
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144

Query: 240 YLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLL 299
           Y+  +    D+ + +G+P+ + + +  +LE L  EY P +  I  ++  P+L ++   LL
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204

Query: 300 AYEARLEKQTSVDSLNVVQANLA--NFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPF 359
            +E+++   +S   + +    ++  N + ++N     +N       N   S P+      
Sbjct: 205 NHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPW------ 264

Query: 360 PTPLPGPSVLGRPQSSPRPQRWPISNPNRP---QCQICGKLGHIALVCYNRHNPMYQAPL 419
                        QSS      P +N ++P   +CQICG  GH A  C    + +     
Sbjct: 265 ------------QQSSTNFH--PNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNS 316

Query: 420 NSSASPSSSFQP 425
               SP + +QP
Sbjct: 325 QQPPSPFTPWQP 316

BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 5.3e-86
Identity = 181/350 (51.71%), Postives = 235/350 (67.14%), Query Frame = 0

Query: 81  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAF 140
           Q+ P   +FL   Q  NPF      S +PFPTL  PLN+KL D+N+LLWKNQLLN +IA 
Sbjct: 2   QFPPPTPNFLA--QPPNPF------SANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIAN 61

Query: 141 DMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA 200
            +  +++GT  PPP+FLD  Q Q NP +  W++ NR LM WIYSSL+E+K+GE++   + 
Sbjct: 62  GLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETT 121

Query: 201 YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYR 260
           ++IW  L  VY+S +TARIMGL+++LQ +RKDG SV+QYLA+IK++ADKF+A+GEPLSYR
Sbjct: 122 HDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR 181

Query: 261 DHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANL 320
           DHL ++L+GLG+EYN FVTSI NR D PSL DVRSLLLAYEARL+KQ +VD LN+ QANL
Sbjct: 182 DHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANL 241

Query: 321 ANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR 380
            N S+  N KR            P P   FP      FP    +     S+LG+PQS   
Sbjct: 242 VNLSLQHNSKR------------PPPKFSFPNHYKHSFPNSPISAAQSQSILGKPQS--- 301

Query: 381 PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF 423
             +WP   + ++ QCQICGKLGH A VCY+R N  Y      +ASP + +
Sbjct: 302 VHKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYH-----NASPQALY 323

BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.4e-55
Identity = 141/339 (41.59%), Postives = 185/339 (54.57%), Query Frame = 0

Query: 80  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIA 139
           F   PA  S      N NP  P +     P P+L+  L+IKL ++N LL K+QLLN IIA
Sbjct: 4   FPPTPASNSNTTTNNNQNP-APQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVIIA 63

Query: 140 FDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSS 199
             +E+FI+     PPK+LD A  QVNP+F  W +LN+ +MSWIYSSL    +G+I+  S+
Sbjct: 64  NGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYST 123

Query: 200 AYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSY 259
           A +IW  L   YES S A +M L SQLQ+I+K  + +++YL+++K V D+F+ IGEPLSY
Sbjct: 124 ARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSY 183

Query: 260 RDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQAN 319
           RD L  ILEGL  EY+ FVTSI NR+DRPSL +V SLL  YE RL +++   +LN  QAN
Sbjct: 184 RDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN 243

Query: 320 LANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP 379
                                                                    R P
Sbjct: 244 --------------------------------------------------------PRQP 285

Query: 380 ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS 418
             N + PQCQICGK GHIAL  Y+R N  Y  P+  +A+
Sbjct: 304 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAA 285

BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-52
Identity = 113/262 (43.13%), Postives = 165/262 (62.98%), Query Frame = 0

Query: 51  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPF 110
           S +TP  P  P   P P    PNP                      NP   +  P P+  
Sbjct: 8   SASTPPAPPPPTSNPLPSSSIPNP----------------------NPQILNTSPLPN-M 67

Query: 111 PTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTF 170
           P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  Q Q NP+F  
Sbjct: 68  PSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHS 127

Query: 171 WQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIR 230
           WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+
Sbjct: 128 WQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIK 187

Query: 231 KDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSL 290
           K+GL+   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  RPS+
Sbjct: 188 KEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 246

Query: 291 ADVRSLLLAYEARLEKQTSVDS 312
            +V SLLL+Y+ARLE+Q++ D+
Sbjct: 248 EEVHSLLLSYDARLERQSATDT 246

BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 0

Query: 101 PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMA 160
           P + P P   P++  P  IKL   NYL+WKNQLLN IIA  +E+FI+G+ P PP+F D A
Sbjct: 37  PPLPPLPI-LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPA 96

Query: 161 QSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIM 220
           +  VN ++  WQ+ NR +MSWIY+SL +  +G+I+G +SA+EIWE L  +Y SSS A+I 
Sbjct: 97  RQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKIT 156

Query: 221 GLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS 280
            LR++LQ +RKDGL+  +Y+ + K++ +  +A+GEP+S +DHL Y+  GL  EYN FVTS
Sbjct: 157 ELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTS 216

Query: 281 IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-- 340
           I  R D   L ++ SLLL+YE RLE Q +   L+ +QANLA+ ++  N+K ++ N  N  
Sbjct: 217 ITKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLNI--NKKPYRPNFSNPV 276

Query: 341 ---TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ 370
              T++   R +  F    P       PS+LG+PQ
Sbjct: 277 GHFTQNFQNR-TQQFQSHPPNSNQFQ-PSILGKPQ 306

BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.2e-50
Identity = 129/351 (36.75%), Postives = 185/351 (52.71%), Query Frame = 0

Query: 97  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFI 156
           NP   S  P P+P           P++  PL +KL D NY++WK QLLN +IA  +E F+
Sbjct: 21  NPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFL 80

Query: 157 NGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEH 216
           +G+   PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE 
Sbjct: 81  DGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEA 140

Query: 217 LRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYI 276
           L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  ++IGEP++Y DHL Y 
Sbjct: 141 LERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYF 200

Query: 277 LEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMS 336
           L GLG +YNPFVTSIQ++  RPS+ +  S            TS+      +    N   +
Sbjct: 201 LGGLGRDYNPFVTSIQSQAIRPSVEEPTS-----------PTSLTRKPKFKNPSTNSFPN 260

Query: 337 SNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP 396
           SN     + Q    S +P PSSP P                                 RP
Sbjct: 261 SNSYSHPRGQNRNPSYSPNPSSPKP---------------------------------RP 320

Query: 397 QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS 431
           +CQIC K GH A  CY+  N  YQ P       N+  +P+    P++ST S
Sbjct: 321 RCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN----PSLSTSS 323

BLAST of Lag0013745 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-16
Identity = 49/191 (25.65%), Postives = 95/191 (49.74%), Query Frame = 0

Query: 116 PLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNR 175
           P+ + + +SNY  W+   L H ++FD+   I+GT  P           N     WQK + 
Sbjct: 21  PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLP----------TNANDVNWQKRDG 80

Query: 176 TLMSWIYSSLNEDKI-GEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLS 235
            +   +Y +L   +  G  +  S++ +IW  ++  + ++  AR + L S+L+      + 
Sbjct: 81  IVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMR 140

Query: 236 VAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRS 295
           VA Y  ++K +AD    +  P++ R+ + Y+L GL  +++  +  I++R   PS  D  +
Sbjct: 141 VADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAAT 200

Query: 296 LLLAYEARLEK 306
           +L   E RL++
Sbjct: 201 MLQEEEDRLKR 201

BLAST of Lag0013745 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 5.8e-16
Identity = 53/228 (23.25%), Postives = 112/228 (49.12%), Query Frame = 0

Query: 117 LNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRT 176
           + + L   NY +W+       ++F +   I+G+  P    +            W++ +  
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKR----------WKERDGL 83

Query: 177 LMSWIYSSLNEDKIGEII--GCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLS 236
           +  WIY ++ +  +  II  GC +A ++W  L  ++  +  AR +   ++L+    D LS
Sbjct: 84  VKMWIYGTITDSLLDTIIKVGC-TARDLWLSLENLFRDNKEARALQFENELRTTTIDDLS 143

Query: 237 VAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRS 296
           V +Y  ++K ++D  + +  P+S R  + ++L GL  +Y+  +  I++++  PS  + RS
Sbjct: 144 VHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARS 203

Query: 297 LLLAYEARLEKQTSVDSLNVVQANLAN--FSMSSNQKRFQKNQPNTRS 341
           +LL  E+RL  ++     +    +L+N  F++   Q+R+ +   N  S
Sbjct: 204 MLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNS 240

BLAST of Lag0013745 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-10
Identity = 41/160 (25.62%), Postives = 75/160 (46.88%), Query Frame = 0

Query: 88  SFLPVFQNFNPFY--PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENF 147
           S  P     +P+Y  P +H  PS F        +   + NY+ WK +  + +       F
Sbjct: 7   SVSPTSDPDSPYYLPPDIH-HPSDFSI----QKLSKDEDNYVAWKIRFRSFLRVTKKFGF 66

Query: 148 INGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEH 207
           I+GT P P          +P +  W++ N  +M W+ +S+ +  +  ++   +A+++WE 
Sbjct: 67  IDGTLPKP-------DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWED 126

Query: 208 LRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDV 246
           LR V+      +I  LR +L  +R+ G SV +Y  ++  V
Sbjct: 127 LRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKV 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.1e-8551.71uncharacterized protein LOC111022315 [Momordica charantia][more]
RVW69807.11.3e-5441.59Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
GFY85402.14.7e-5243.13hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
PON47862.13.0e-5144.73hypothetical protein TorRG33x02_321990 [Trema orientale][more]
GFZ12741.11.3e-4936.75UBX domain-containing protein [Actinidia rufa][more]
Match NameE-valueIdentityDescription
Q94HW21.2e-2124.04Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DQX75.3e-8651.71uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A438GC626.4e-5541.59Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A7J0EGI52.3e-5243.13Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A2P5BGF81.5e-5144.73Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A7J0GPN06.2e-5036.75UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G34070.13.4e-1625.65CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
AT5G48050.15.8e-1623.25CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
AT1G21280.16.2e-1025.63CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 170..305
e-value: 2.1E-24
score: 85.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 368..382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..382
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 131..423
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 131..423

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013745.1Lag0013745.1mRNA