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Lag0013745 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCTTCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATCCCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTTCCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAACGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCTCCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGACTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTCCTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTAGCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGTTTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAGACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCCATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA MASSSSSSTAADDRLPPFPITSTVSSPIPVTTLSSPLPTPVTSHRLPLNTSTATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSFQPAISTKSVVLSLFRCH Homology
BLAST of Lag0013745 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia]) HSP 1 Score: 328.2 bits (840), Expect = 1.1e-85 Identity = 181/350 (51.71%), Postives = 235/350 (67.14%), Query Frame = 0
BLAST of Lag0013745 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 224.9 bits (572), Expect = 1.3e-54 Identity = 141/339 (41.59%), Postives = 185/339 (54.57%), Query Frame = 0
BLAST of Lag0013745 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa]) HSP 1 Score: 216.5 bits (550), Expect = 4.7e-52 Identity = 113/262 (43.13%), Postives = 165/262 (62.98%), Query Frame = 0
BLAST of Lag0013745 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale]) HSP 1 Score: 213.8 bits (543), Expect = 3.0e-51 Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 0
BLAST of Lag0013745 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa]) HSP 1 Score: 208.4 bits (529), Expect = 1.3e-49 Identity = 129/351 (36.75%), Postives = 185/351 (52.71%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.2e-21 Identity = 75/312 (24.04%), Postives = 145/312 (46.47%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 5.3e-86 Identity = 181/350 (51.71%), Postives = 235/350 (67.14%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 6.4e-55 Identity = 141/339 (41.59%), Postives = 185/339 (54.57%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 2.3e-52 Identity = 113/262 (43.13%), Postives = 165/262 (62.98%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51 Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 0
BLAST of Lag0013745 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 6.2e-50 Identity = 129/351 (36.75%), Postives = 185/351 (52.71%), Query Frame = 0
BLAST of Lag0013745 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.0 bits (206), Expect = 3.4e-16 Identity = 49/191 (25.65%), Postives = 95/191 (49.74%), Query Frame = 0
BLAST of Lag0013745 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 83.2 bits (204), Expect = 5.8e-16 Identity = 53/228 (23.25%), Postives = 112/228 (49.12%), Query Frame = 0
BLAST of Lag0013745 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 6.2e-10 Identity = 41/160 (25.62%), Postives = 75/160 (46.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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