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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTACCTCTTTCAGAACTCGAATCCACTTCCCAATCTTCCCCACTTTCAAAAACCCTTCAATTTCTCCCCCTTCAATTCCCTTCAACGCCCCTTCCCCTCTCAGAAGCCGTTTCCGGCCACTCGCATCCTCTTCGCCGCCGGTCTCTCCTTCGCAATCGCCGGCCAAATCACTAAGGATTCCTCACCCGTCGGATTTCAAGCCAATCGAAGCAACCCCAAGTGAGAACTCAAGGTTTCTGATCATCGGAGCCGTTTCGGTGGGCGTTGCCCTGTTTCTGATGGGGTGCGACGGCGAAAGGGCTCTGGCTTTGGGCCCTGAAGGGCCGTTGGTTGAGGAATTTTGGGACAACGTTAGAAGATATGCGATTTACGCCGTTACTGTGAGTACTGGTGCTCTTTACACAATCTTTCTGCCCATTTTGGAGCTGCTGAAGAACCCCATTACCGCTGTTCTTGTTTTGGCTATTTTTGGGGGTTCCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCTTACTGA mRNA sequence ATGGCTACCTCTTTCAGAACTCGAATCCACTTCCCAATCTTCCCCACTTTCAAAAACCCTTCAATTTCTCCCCCTTCAATTCCCTTCAACGCCCCTTCCCCTCTCAGAAGCCGTTTCCGGCCACTCGCATCCTCTTCGCCGCCGGTCTCTCCTTCGCAATCGCCGGCCAAATCACTAAGGATTCCTCACCCGTCGGATTTCAAGCCAATCGAAGCAACCCCAAGTGAGAACTCAAGGTTTCTGATCATCGGAGCCGTTTCGGTGGGCGTTGCCCTGTTTCTGATGGGGTGCGACGGCGAAAGGGCTCTGGCTTTGGGCCCTGAAGGGCCGTTGGTTGAGGAATTTTGGGACAACGTTAGAAGATATGCGATTTACGCCGTTACTGTGAGTACTGGTGCTCTTTACACAATCTTTCTGCCCATTTTGGAGCTGCTGAAGAACCCCATTACCGCTGTTCTTGTTTTGGCTATTTTTGGGGGTTCCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCTTACTGA Coding sequence (CDS) ATGGCTACCTCTTTCAGAACTCGAATCCACTTCCCAATCTTCCCCACTTTCAAAAACCCTTCAATTTCTCCCCCTTCAATTCCCTTCAACGCCCCTTCCCCTCTCAGAAGCCGTTTCCGGCCACTCGCATCCTCTTCGCCGCCGGTCTCTCCTTCGCAATCGCCGGCCAAATCACTAAGGATTCCTCACCCGTCGGATTTCAAGCCAATCGAAGCAACCCCAAGTGAGAACTCAAGGTTTCTGATCATCGGAGCCGTTTCGGTGGGCGTTGCCCTGTTTCTGATGGGGTGCGACGGCGAAAGGGCTCTGGCTTTGGGCCCTGAAGGGCCGTTGGTTGAGGAATTTTGGGACAACGTTAGAAGATATGCGATTTACGCCGTTACTGTGAGTACTGGTGCTCTTTACACAATCTTTCTGCCCATTTTGGAGCTGCTGAAGAACCCCATTACCGCTGTTCTTGTTTTGGCTATTTTTGGGGGTTCCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCTTACTGA Protein sequence MATSFRTRIHFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSLRIPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNVRRYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFSYDYSY
Homology
BLAST of Lag0013637 vs. NCBI nr
Match: XP_023543366.1 (uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 285.4 bits (729), Expect = 3.4e-73 Identity = 152/185 (82.16%), Postives = 162/185 (87.57%), Query Frame = 0
Query: 1 MATSFRTRI-HFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSL 60
MATSFR+RI HFPI PTFKNPS+SPP P A SPLR FRPLA+S+PP QSPAK L
Sbjct: 1 MATSFRSRIHHFPISPTFKNPSVSPPPFPIKATSPLRGPFRPLAASAPP----QSPAKPL 60
Query: 61 RIPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNV 120
+ PHP DFK I+ TP NSRFLIIGAVSVGVALFLMGCDG+RALALGPEGPLVEEFWDNV
Sbjct: 61 KTPHPLDFKIIDETPIGNSRFLIIGAVSVGVALFLMGCDGDRALALGPEGPLVEEFWDNV 120
Query: 121 RRYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFS 180
RRYAIYAVTVSTGALYTI LPI ELLKNPITAVLVLAIFGG+IF+ISQVLSAMVGV EFS
Sbjct: 121 RRYAIYAVTVSTGALYTILLPIFELLKNPITAVLVLAIFGGAIFVISQVLSAMVGVNEFS 180
Query: 181 YDYSY 185
YDY+Y
Sbjct: 181 YDYAY 181
BLAST of Lag0013637 vs. NCBI nr
Match: XP_022926795.1 (uncharacterized protein LOC111433802 [Cucurbita moschata]) HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71 Identity = 152/184 (82.61%), Postives = 161/184 (87.50%), Query Frame = 0
Query: 1 MATSFRTRIHFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSLR 60
MATS RTRIHF IFPT KNP ISPP IP N P+PLRS FRPLASSSPP SP++SP +
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNT-- 60
Query: 61 IPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNVR 120
PSD K IEA P E+SRFLIIGAVSVGVALFLMG DGERALALGPEGPLVEEFWDNVR
Sbjct: 61 --WPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVR 120
Query: 121 RYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFSY 180
RYAIYAVTVS+GALYTI LPILELLKNPITAVLVLAIFGG+IFIISQVLSAMVGV EFSY
Sbjct: 121 RYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSY 180
Query: 181 DYSY 185
+Y+Y
Sbjct: 181 EYAY 180
BLAST of Lag0013637 vs. NCBI nr
Match: XP_023003383.1 (uncharacterized protein LOC111497006 [Cucurbita maxima]) HSP 1 Score: 279.3 bits (713), Expect = 2.5e-71 Identity = 151/184 (82.07%), Postives = 161/184 (87.50%), Query Frame = 0
Query: 1 MATSFRTRIHFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSLR 60
MATS RTRIHF IFPT KNP ISPP IP N P+PLRS FRPLASSSPP SP++SP +
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNT-- 60
Query: 61 IPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNVR 120
P+D K IEA P E+SRFLIIGAVSVGVALFLMG DGERALALGPEGPLVEEFWDNVR
Sbjct: 61 --WPTDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVR 120
Query: 121 RYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFSY 180
RYAIYAVTVS+GALYTI LPILELLKNPITAVLVLAIFGG+IFIISQVLSAMVGV EFSY
Sbjct: 121 RYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSY 180
Query: 181 DYSY 185
+Y+Y
Sbjct: 181 EYAY 180
BLAST of Lag0013637 vs. NCBI nr
Match: XP_022949889.1 (uncharacterized protein LOC111453148 [Cucurbita moschata] >KAG6603825.1 hypothetical protein SDJN03_04434, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034006.1 hypothetical protein SDJN02_03732, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 278.5 bits (711), Expect = 4.2e-71 Identity = 149/185 (80.54%), Postives = 160/185 (86.49%), Query Frame = 0
Query: 1 MATSFRTRI-HFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSL 60
MATSFR+RI H PI PTFKNPS+SPP P A SPLR FRPLA+S+PP QSPAK L
Sbjct: 1 MATSFRSRIHHVPISPTFKNPSVSPPPFPIKATSPLRGSFRPLAASAPP----QSPAKPL 60
Query: 61 RIPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNV 120
+ P P DFK I+ TP NSRFLIIGAVSVGVALFLMGCDG+RALALGPEGPLVEEFWDNV
Sbjct: 61 KTPQPLDFKIIDETPIGNSRFLIIGAVSVGVALFLMGCDGDRALALGPEGPLVEEFWDNV 120
Query: 121 RRYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFS 180
RRYAIYAVTVS+GALYTI LPI ELLKNPITAVLVLAIFGG+IF+ISQVLSAMVGV EFS
Sbjct: 121 RRYAIYAVTVSSGALYTILLPIFELLKNPITAVLVLAIFGGAIFVISQVLSAMVGVNEFS 180
Query: 181 YDYSY 185
YDY+Y
Sbjct: 181 YDYAY 181
BLAST of Lag0013637 vs. NCBI nr
Match: XP_023518006.1 (uncharacterized protein LOC111781569 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 278.5 bits (711), Expect = 4.2e-71 Identity = 150/184 (81.52%), Postives = 160/184 (86.96%), Query Frame = 0
Query: 1 MATSFRTRIHFPIFPTFKNPSISPPSIPFNAPSPLRSRFRPLASSSPPVSPSQSPAKSLR 60
MATS RTRIHF IFPT +NP ISPP IP N P+PLRS FRPLASSSPP SP++SP +
Sbjct: 1 MATSLRTRIHFSIFPTSRNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPTNT-- 60
Query: 61 IPHPSDFKPIEATPSENSRFLIIGAVSVGVALFLMGCDGERALALGPEGPLVEEFWDNVR 120
PSD K IEA P E+SRFLIIGAVSVGVALFLMG DGERALALGPEGPLVEEFWDNVR
Sbjct: 61 --WPSDLKAIEAHPMESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVR 120
Query: 121 RYAIYAVTVSTGALYTIFLPILELLKNPITAVLVLAIFGGSIFIISQVLSAMVGVTEFSY 180
RYAIYAVTVS+GALYTI LPI ELLKNPITAVLVLAIFGG+IFIISQVLSAMVGV EFSY
Sbjct: 121 RYAIYAVTVSSGALYTILLPIFELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSY 180
Query: 181 DYSY 185
+Y+Y
Sbjct: 181 EYAY 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023543366.1 | 3.4e-73 | 82.16 | uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022926795.1 | 1.1e-71 | 82.61 | uncharacterized protein LOC111433802 [Cucurbita moschata] | [more] |
| XP_023003383.1 | 2.5e-71 | 82.07 | uncharacterized protein LOC111497006 [Cucurbita maxima] | [more] |
| XP_022949889.1 | 4.2e-71 | 80.54 | uncharacterized protein LOC111453148 [Cucurbita moschata] >KAG6603825.1 hypothet... | [more] |
| XP_023518006.1 | 4.2e-71 | 81.52 | uncharacterized protein LOC111781569 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR008470 | Uncharacterised protein family Ycf33 | PFAM | PF05421 | DUF751 | coord: 115..174
e-value: 1.7E-21
score: 76.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 32..62 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 39..59 |
| None | No IPR available | PANTHER | PTHR36049 | TRANSMEMBRANE PROTEIN | coord: 9..184 |
| None | No IPR available | PANTHER | PTHR36049:SF3 | TRANSMEMBRANE PROTEIN | coord: 9..184 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0009536 |
plastid |
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