Lag0013549 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013549
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF1990 domain-containing protein
Locationchr1: 51166016 .. 51166348 (+)
RNA-Seq ExpressionLag0013549
SyntenyLag0013549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAACAGAAACACCCAATCTGTCTCCTTTATTTCTGAAGAGTTCACTCAAACAATTTGCAATCTTCCTTTATTCCTGGCCAAAATTTTCCCAGATTCAGACTGGTAATGTTTCCCATTTGAGATGGACAAGAACAACCAGGAATGGTATGAAATTCTCCTTCTCAAAGCCAGCCCACATATTATCAGTCATTACTAATCCCCAAGTAATTCTTCAGTACAAGTATTTTGCTCATCAATCTACCAATGCAGTCCAGAAACATTCGACTGCTAATAGAGTTCCAGTAGATAACTTCTTCTTGCACAACACTGTTTCTAATGATCCTTAG

mRNA sequence

ATGGATCAAACAGAAACACCCAATCTGTCTCCTTTATTTCTGAAGAGTTCACTCAAACAATTTGCAATCTTCCTTTATTCCTGGCCAAAATTTTCCCAGATTCAGACTGGTAATGTTTCCCATTTGAGATGGACAAGAACAACCAGGAATGGTATGAAATTCTCCTTCTCAAAGCCAGCCCACATATTATCAGTCATTACTAATCCCCAAGTAATTCTTCAGTACAAGTATTTTGCTCATCAATCTACCAATGCAGTCCAGAAACATTCGACTGCTAATAGAGTTCCAGTAGATAACTTCTTCTTGCACAACACTGTTTCTAATGATCCTTAG

Coding sequence (CDS)

ATGGATCAAACAGAAACACCCAATCTGTCTCCTTTATTTCTGAAGAGTTCACTCAAACAATTTGCAATCTTCCTTTATTCCTGGCCAAAATTTTCCCAGATTCAGACTGGTAATGTTTCCCATTTGAGATGGACAAGAACAACCAGGAATGGTATGAAATTCTCCTTCTCAAAGCCAGCCCACATATTATCAGTCATTACTAATCCCCAAGTAATTCTTCAGTACAAGTATTTTGCTCATCAATCTACCAATGCAGTCCAGAAACATTCGACTGCTAATAGAGTTCCAGTAGATAACTTCTTCTTGCACAACACTGTTTCTAATGATCCTTAG

Protein sequence

MDQTETPNLSPLFLKSSLKQFAIFLYSWPKFSQIQTGNVSHLRWTRTTRNGMKFSFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANRVPVDNFFLHNTVSNDP
Homology
[Close]
BLAST of Lag0013549 vs. NCBI nr
Match: XP_022141808.1 (UPF0548 protein At2g17695 [Momordica charantia] >XP_022141809.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141810.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141811.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141813.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141814.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141815.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141816.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141817.1 UPF0548 protein At2g17695 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 55  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN 94
           SFSKPAHILS I+ P VIL+ KYFAHQS+NAV+K+STA+
Sbjct: 167 SFSKPAHILSFISYPYVILRQKYFAHQSSNAVKKYSTAS 205

[Close]
BLAST of Lag0013549 vs. NCBI nr
Match: XP_038883223.1 (UPF0548 protein At2g17695 isoform X3 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 55  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA 93
           SFSKPAHILS ++ P VIL+ KYFAHQSTNAV+K+ TA
Sbjct: 159 SFSKPAHILSFLSYPYVILRQKYFAHQSTNAVKKYLTA 196

[Close]
BLAST of Lag0013549 vs. NCBI nr
Match: XP_038883220.1 (UPF0548 protein At2g17695 isoform X1 [Benincasa hispida] >XP_038883221.1 UPF0548 protein At2g17695 isoform X1 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 55  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA 93
           SFSKPAHILS ++ P VIL+ KYFAHQSTNAV+K+ TA
Sbjct: 167 SFSKPAHILSFLSYPYVILRQKYFAHQSTNAVKKYLTA 204

[Close]
BLAST of Lag0013549 vs. NCBI nr
Match: RXI06566.1 (hypothetical protein DVH24_025702 [Malus domestica])

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 55  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR 95
           SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Sbjct: 240 SFSKPAHLLSFIGYPYVMLRQKYFAHQSTNAIMKHLNASK 279

[Close]
BLAST of Lag0013549 vs. NCBI nr
Match: TQD71959.1 (hypothetical protein C1H46_042505 [Malus baccata])

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 55  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR 95
           SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Sbjct: 172 SFSKPAHLLSFIGYPYVMLRQKYFAHQSTNAIMKHLNASK 211

The following BLAST results are available for this feature:
BLAST of Lag0013549 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141808.11.1e-0574.36UPF0548 protein At2g17695 [Momordica charantia] >XP_022141809.1 UPF0548 protein ... [more]
XP_038883223.13.1e-0573.68UPF0548 protein At2g17695 isoform X3 [Benincasa hispida][more]
XP_038883220.13.1e-0573.68UPF0548 protein At2g17695 isoform X1 [Benincasa hispida] >XP_038883221.1 UPF0548... [more]
RXI06566.19.1e-0565.00hypothetical protein DVH24_025702 [Malus domestica][more]
TQD71959.19.1e-0565.00hypothetical protein C1H46_042505 [Malus baccata][more]
BLAST of Lag0013549 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013549.1Lag0013549.1mRNA