Lag0013545 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013545
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr1: 51143299 .. 51143652 (-)
RNA-Seq ExpressionLag0013545
SyntenyLag0013545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCGAATCACTGTTGGATTCCTCCCCTTGCTAATTTTTGGAAAATGAAAGCAGATGCTTCGTGGAGTTCATACCCTCCCTCAACTGGAATAGGTGTTATTTTTAAGGATTCAGAAGGAGCTATTAGAGGGACAATAAGTTCTTACATTGACGTGGATTATTTGGGCCAAAATGCTGAATTATGGGCCATAGTTGATGGATTAAAGATGGCTGTAAATTTGGGCTGTGAAAACTTGATTGTGGAATCTGATAGTTTGATGGCCATAAATCTCATCAATAAAAAATCAGATCAATGGGGGAGAAGCAGAGGTTTTTCTAGAATAGATTTGGGCAATCATCTCATCTTCTAG

mRNA sequence

ATGATCCCGAATCACTGTTGGATTCCTCCCCTTGCTAATTTTTGGAAAATGAAAGCAGATGCTTCGTGGAGTTCATACCCTCCCTCAACTGGAATAGGTGTTATTTTTAAGGATTCAGAAGGAGCTATTAGAGGGACAATAAGTTCTTACATTGACGTGGATTATTTGGGCCAAAATGCTGAATTATGGGCCATAGTTGATGGATTAAAGATGGCTGTAAATTTGGGCTGTGAAAACTTGATTGTGGAATCTGATAGTTTGATGGCCATAAATCTCATCAATAAAAAATCAGATCAATGGGGGAGAAGCAGAGGTTTTTCTAGAATAGATTTGGGCAATCATCTCATCTTCTAG

Coding sequence (CDS)

ATGATCCCGAATCACTGTTGGATTCCTCCCCTTGCTAATTTTTGGAAAATGAAAGCAGATGCTTCGTGGAGTTCATACCCTCCCTCAACTGGAATAGGTGTTATTTTTAAGGATTCAGAAGGAGCTATTAGAGGGACAATAAGTTCTTACATTGACGTGGATTATTTGGGCCAAAATGCTGAATTATGGGCCATAGTTGATGGATTAAAGATGGCTGTAAATTTGGGCTGTGAAAACTTGATTGTGGAATCTGATAGTTTGATGGCCATAAATCTCATCAATAAAAAATCAGATCAATGGGGGAGAAGCAGAGGTTTTTCTAGAATAGATTTGGGCAATCATCTCATCTTCTAG

Protein sequence

MIPNHCWIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQNAELWAIVDGLKMAVNLGCENLIVESDSLMAINLINKKSDQWGRSRGFSRIDLGNHLIF
Homology
BLAST of Lag0013545 vs. NCBI nr
Match: KAF7823154.1 (putative WRKY transcription factor 31 [Senna tora])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 0

Query: 1   MIPNHCWIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQNA 60
           +I N  W PPL  +WK+  D + S  P    IG I ++  G      S Y+        A
Sbjct: 27  IILNVKWSPPLEGWWKLNTDGACSGNPGPFAIGGIIRNQLGNWISGYSGYVGTG-TALKA 86

Query: 61  ELWAIVDGLKMAVNLGCENLIVESDSLMAINLINKKSDQWGRSRG----FSRIDLGNHL 116
           ELWAI  G+K+A NLGC++L +ESDSL+A NL+   S     S G    F+R   GN L
Sbjct: 87  ELWAISSGIKLASNLGCKHLWIESDSLLACNLLFDHSLSHLHSIGILSPFARQAFGNSL 144

BLAST of Lag0013545 vs. NCBI nr
Match: KAF7828542.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 7    WIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQNAELWAIV 66
            W PP  N+WK+  D + S  P    IG + +D  G      SS+I    +   AE+WAI+
Sbjct: 1442 WHPPDPNWWKLNCDGACSGNPGPFAIGGLIRDEYGNWVKGFSSFIGYG-IAFTAEVWAII 1501

Query: 67   DGLKMAVNLGCENLIVESDSLMAINLIN 95
             GLK+A+NL C  L VESDSL+A+NL+N
Sbjct: 1502 VGLKLAMNLNCHYLCVESDSLLAVNLLN 1528

BLAST of Lag0013545 vs. NCBI nr
Match: KAF7844846.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 7   WIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQNAELWAIV 66
           W PP  N+WK+  + + S  P    IG + ++  G      SS+I  D     AELWAI 
Sbjct: 847 WQPPPHNWWKLNTNGACSGNPGPFAIGGLIRNHNGTFISGFSSFIGYD-TAFTAELWAIT 906

Query: 67  DGLKMAVNLGCENLIVESDSLMAINLIN 95
            GL MA++L C  + VESDSL+A+NL+N
Sbjct: 907 VGLNMALSLNCNYICVESDSLLAVNLLN 933

BLAST of Lag0013545 vs. NCBI nr
Match: KAF7830619.1 (Trimethylguanosine synthase [Senna tora])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 7   WIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQNAELWAIV 66
           W PP+AN+WK+  D + S  P    IG I +D  G+     SSYI        AELWAI 
Sbjct: 720 WHPPIANWWKLNTDGACSGNPGPFAIGGIIRDHNGSFISGYSSYIGFG-TALKAELWAIS 779

Query: 67  DGLKMAVNLGCENLIVESDSLMAINLI 94
            GL++A++L C  + VESDSL+A+  +
Sbjct: 780 VGLRIALSLNCNFIHVESDSLLAVKFL 805

BLAST of Lag0013545 vs. NCBI nr
Match: KAF7801271.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 7    WIPPLANFWKMKADASWSSYPPSTGIGVIFKDSEGAIRGTISSYIDVDYLGQN--AELWA 66
            W PP   +WK+  D S        G G + +DS G      S ++     G N  AELWA
Sbjct: 1722 WDPPPLGWWKLNTDGSCQGNQNMIGGGSLIRDSNGNWVNGFSKFMGE---GNNLIAELWA 1781

Query: 67   IVDGLKMAVNLGCENLIVESDSLMAINLINKKS 98
            I +GLK+A +L C +LIVESDSL  +NLIN  +
Sbjct: 1782 IFEGLKLANHLHCSHLIVESDSLAVVNLINSNN 1811

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7823154.12.6e-1039.50putative WRKY transcription factor 31 [Senna tora][more]
KAF7828542.12.6e-1044.32reverse transcriptase [Senna tora][more]
KAF7844846.11.7e-0942.05reverse transcriptase [Senna tora][more]
KAF7830619.12.2e-0942.53Trimethylguanosine synthase [Senna tora][more]
KAF7801271.12.5e-0841.94reverse transcriptase [Senna tora][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 19..98
e-value: 2.6E-14
score: 53.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 14..111
e-value: 1.9E-10
score: 42.9
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 3..98
NoneNo IPR availablePANTHERPTHR47074:SF17PUTATIVE-RELATEDcoord: 3..98
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 20..102
e-value: 5.30904E-17
score: 68.88
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 13..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013545.1Lag0013545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity