Lag0013522 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013522
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein preY, mitochondrial
Locationchr1: 50989658 .. 50990407 (+)
RNA-Seq ExpressionLag0013522
SyntenyLag0013522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAATAAGCAAAGCGCTTCTGAAAGAAGCGGGCTCTGGTCTCACCAAGACTCTCTCCGAGATTCTGATCTGCCCGCTCTCCAAACAACCTCTAAGGTAATGATTCGATATGAATTCTACCATTTTCTTTCATTCTCGTAAATTTGTTCTGCAAAATTTGGTTTGATTCTGTGTTTCTGCCGTTAGGTATTGCGAAGCGTCAAATTCTCTGATCAGCGATGCGATTGGTGTTTCTTTTCCTGTGAGTACATGAAGAGAAAATTTGCATTCCAGTTCTGTTTTCATCTAGAAAATTTCCCTTCCTATATTTGCTCTCTGTTTCTTTTTTTTAGACCACTTAGAGTTCTGTAGCTGTTATCTGACTTGCCCAGGTAGTGAAAGCTTACATTAACTTTGAGCGATATTTTGATCTACCGACTGATGGATCAAGACACTCCTTGGTTTGATTAGTTTAATGAAATAGTTCTCAATGTTGCAAGATTAGGTAGTGAAAGTGGCCGTAGGAACCAGAATTTTGTGTTGGAAACCCTTGGGTTTCTTTTCCTCTTTTCTCCCCTCATTTGTGGGAGTTAGGCTACAAGACATGTGCCTGTTTCTATTTTATGTTGTAATTCATTTGTCTTGCTTATGGTTATGTTAGATAAAGGGCGGAATCCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATCCATTGAAAGGTGAGGATAATGTTGAGATTCCTCGAGAAAGATGA

mRNA sequence

ATGGTGAGAATAAGCAAAGCGCTTCTGAAAGAAGCGGGCTCTGGTCTCACCAAGACTCTCTCCGAGATTCTGATCTGCCCGCTCTCCAAACAACCTCTAAGGTATTGCGAAGCGTCAAATTCTCTGATCAGCGATGCGATTGGTGTTTCTTTTCCTGTAGTGAAAGCTTACATTAACTTTGAGCGATATTTTGATCTACCGACTGATGGATCAAGACACTCCTTGATAAAGGGCGGAATCCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATCCATTGAAAGGTGAGGATAATGTTGAGATTCCTCGAGAAAGATGA

Coding sequence (CDS)

ATGGTGAGAATAAGCAAAGCGCTTCTGAAAGAAGCGGGCTCTGGTCTCACCAAGACTCTCTCCGAGATTCTGATCTGCCCGCTCTCCAAACAACCTCTAAGGTATTGCGAAGCGTCAAATTCTCTGATCAGCGATGCGATTGGTGTTTCTTTTCCTGTAGTGAAAGCTTACATTAACTTTGAGCGATATTTTGATCTACCGACTGATGGATCAAGACACTCCTTGATAAAGGGCGGAATCCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATCCATTGAAAGGTGAGGATAATGTTGAGATTCCTCGAGAAAGATGA

Protein sequence

MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINFERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGEDNVEIPRER
Homology
BLAST of Lag0013522 vs. NCBI nr
Match: XP_022949957.1 (uncharacterized protein LOC111453193 [Cucurbita moschata] >XP_023544418.1 uncharacterized protein LOC111804007 [Cucurbita pepo subsp. pepo] >KAG7034074.1 hypothetical protein SDJN02_03801 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-30
Identity = 75/109 (68.81%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 1   MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINF 60
           MVRIS++LLKEAGSGLTKTLSEIL+CPLSKQPLRYCEASNSLISD I VSFP        
Sbjct: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFP-------- 60

Query: 61  ERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGEDNVEIPRER 110
                          I+GG+PCLVPK+GRIIETDD LKGED VEIPRE+
Sbjct: 61  ---------------IRGGVPCLVPKEGRIIETDDGLKGEDTVEIPREK 86

BLAST of Lag0013522 vs. NCBI nr
Match: XP_022977422.1 (uncharacterized protein LOC111477769 isoform X2 [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINF 60
           MVRIS++LLKEAGSGLTKTLSEIL+CPLSKQPLRYCEASNSLISD I VSFP        
Sbjct: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFP-------- 60

Query: 61  ERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGEDNVEIPRER 110
                          I+GG+PCLVPK+G IIETDD LKGED VEIPRE+
Sbjct: 61  ---------------IRGGVPCLVPKEGTIIETDDGLKGEDTVEIPREK 86

BLAST of Lag0013522 vs. NCBI nr
Match: XP_008440859.1 (PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo] >KAA0025649.1 UPF0434 protein [Cucumis melo var. makuwa] >TYK12522.1 UPF0434 protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 72/109 (66.06%), Postives = 77/109 (70.64%), Query Frame = 0

Query: 1   MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINF 60
           MVRISKALLKEA SG T TLS+IL+CPLSKQPLRYCEASNSLISD IGVSFP        
Sbjct: 1   MVRISKALLKEASSGFTNTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFP-------- 60

Query: 61  ERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGEDNVEIPRER 110
                          I+ GIPCLVPK+GRIIE DD LKGED VEI RE+
Sbjct: 61  ---------------IRDGIPCLVPKEGRIIENDDALKGEDTVEITREK 86

BLAST of Lag0013522 vs. NCBI nr
Match: XP_038883681.1 (UPF0434 protein Ecaj_0131 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 7.6e-28
Identity = 72/109 (66.06%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 1   MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINF 60
           MV+ISKALLKEA SG TKTLSEIL+CPLSKQPLRYCEASNSLISD I VSFP        
Sbjct: 1   MVKISKALLKEASSGFTKTLSEILVCPLSKQPLRYCEASNSLISDTICVSFP-------- 60

Query: 61  ERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGEDNVEIPRER 110
                          I+ GIPCLVPKDGRIIET+D LKGED VE+ RE+
Sbjct: 61  ---------------IRDGIPCLVPKDGRIIETEDALKGEDTVELTREK 86

BLAST of Lag0013522 vs. NCBI nr
Match: XP_022132378.1 (uncharacterized protein LOC111005251 isoform X2 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-27
Identity = 70/101 (69.31%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MVRISKALLKEAGSGLTKTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINF 60
           MVRIS ALLK+AGSGLTKTLSEIL+CPL+KQPLRYCEASNSLISD IGVSFP        
Sbjct: 1   MVRISGALLKDAGSGLTKTLSEILVCPLTKQPLRYCEASNSLISDTIGVSFP-------- 60

Query: 61  ERYFDLPTDGSRHSLIKGGIPCLVPKDGRIIETDDPLKGED 102
                          IKGGIPCLVP+DGRIIETDD LK ED
Sbjct: 61  ---------------IKGGIPCLVPRDGRIIETDDALKRED 78

BLAST of Lag0013522 vs. ExPASy Swiss-Prot
Match: Q5M8Z2 (Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 26/76 (34.21%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 19  TLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYINFERYFDLPTDGSRHSLIKG 78
           TL + L+CPLS++ LRY E++N LI+D +G+++P+V                        
Sbjct: 58  TLLQFLVCPLSRKSLRYEESTNELINDELGIAYPIV-----------------------D 110

Query: 79  GIPCLVPKDGRIIETD 95
           GIP ++P+D R+I  D
Sbjct: 118 GIPNMIPQDARMIHKD 110

BLAST of Lag0013522 vs. ExPASy Swiss-Prot
Match: Q5U1Z8 (Protein preY, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pyurf PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-05
Identity = 18/40 (45.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 20 LSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYIN 60
          L + L+CPLSK+PLRY  ++N LI+D +G+++P++    N
Sbjct: 52 LLQFLVCPLSKKPLRYDASTNELINDELGIAYPIIDGVPN 91

BLAST of Lag0013522 vs. ExPASy Swiss-Prot
Match: Q2T9V7 (Protein preY, mitochondrial OS=Bos taurus OX=9913 GN=PREY PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 18 KTLSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYIN 60
          + L E L+CPLSK+PLRY  ++N LI++ +G+++P++    N
Sbjct: 52 QALLEFLVCPLSKKPLRYEASTNELINEELGIAYPIIDGIPN 93

BLAST of Lag0013522 vs. ExPASy Swiss-Prot
Match: Q96I23 (Protein preY, mitochondrial OS=Homo sapiens OX=9606 GN=PYURF PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 18/40 (45.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 20 LSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYIN 60
          L E L+CPLSK+PLRY  ++N LI++ +G+++P++    N
Sbjct: 54 LLEFLVCPLSKKPLRYEASTNELINEELGIAYPIIDGIPN 93

BLAST of Lag0013522 vs. ExPASy Swiss-Prot
Match: Q9D1C3 (Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 16/40 (40.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 20 LSEILICPLSKQPLRYCEASNSLISDAIGVSFPVVKAYIN 60
          L + L+CPLSK+PLRY  ++N L+++ +G+++P++    N
Sbjct: 52 LLQFLVCPLSKKPLRYEASTNELVNEELGIAYPIIDGIPN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022949957.12.1e-3068.81uncharacterized protein LOC111453193 [Cucurbita moschata] >XP_023544418.1 unchar... [more]
XP_022977422.11.1e-2967.89uncharacterized protein LOC111477769 isoform X2 [Cucurbita maxima][more]
XP_008440859.15.8e-2866.06PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo] >KAA0025649.1 UPF0434 protein... [more]
XP_038883681.17.6e-2866.06UPF0434 protein Ecaj_0131 [Benincasa hispida][more]
XP_022132378.18.4e-2769.31uncharacterized protein LOC111005251 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q5M8Z22.2e-0634.21Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1[more]
Q5U1Z89.4e-0545.00Protein preY, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pyurf PE=3 SV=1[more]
Q2T9V71.2e-0442.86Protein preY, mitochondrial OS=Bos taurus OX=9913 GN=PREY PE=3 SV=1[more]
Q96I231.6e-0445.00Protein preY, mitochondrial OS=Homo sapiens OX=9606 GN=PYURF PE=1 SV=1[more]
Q9D1C34.7e-0440.00Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.25.10coord: 23..56
e-value: 2.3E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR33505:SF4ZGC:162634coord: 76..101
coord: 1..54
NoneNo IPR availablePANTHERPTHR33505ZGC:162634coord: 76..101
coord: 1..54
NoneNo IPR availableSUPERFAMILY158997Trm112p-likecoord: 17..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013522.1Lag0013522.1mRNA