Lag0013519 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013519
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1: 50953597 .. 50954139 (-)
RNA-Seq ExpressionLag0013519
SyntenyLag0013519
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAACGTCTTCTCAAACACAACAAATGCCATGGCCGCCAGAGCTACAACGTTCAGCAGCCCTCCTTATCAGCTACTCAATCAAATAACCTCCATCAAGCTTGATCGTGGGAACTTTCTCTTGTGGAAGAATCTTGCACTTCCAATCCTCCGAAGCTATAAGTTGGAAGGACACTTACTGGGTACTAAACCATGCCCGCCGATGATGATTCCTCAAGCAGCTGAAACGGCGAATACAAATTTGACCACTGATGTAGCGGCAGAAGCTTCGAGCTCAGGAGCGACTGCAAGCGGCGATGTGTCCTCTCGACTCGAGTCCAGTTTGGTGGTAAATCCCCAATATGAAGCCTGGGTAGCTGTTGATCAGCTACTACTAGGCTGGTTATACAACTCAATGACTCCAGAGGTTGCAACCCAAGTGATGGAGTCGAGAATGCCAAGGATCTTTGGTCAGCCATTCAAGAATTATTTGGGGTTCAATCACGAGCCGAGGAAGACTTCTTACGCCAAACCTTTCAACAAACCAGAAAAGGTAACTTAA

mRNA sequence

ATGACCAACGTCTTCTCAAACACAACAAATGCCATGGCCGCCAGAGCTACAACGTTCAGCAGCCCTCCTTATCAGCTACTCAATCAAATAACCTCCATCAAGCTTGATCGTGGGAACTTTCTCTTGTGGAAGAATCTTGCACTTCCAATCCTCCGAAGCTATAAGTTGGAAGGACACTTACTGGGTACTAAACCATGCCCGCCGATGATGATTCCTCAAGCAGCTGAAACGGCGAATACAAATTTGACCACTGATGTAGCGGCAGAAGCTTCGAGCTCAGGAGCGACTGCAAGCGGCGATGTGTCCTCTCGACTCGAGTCCAGTTTGGTGGTAAATCCCCAATATGAAGCCTGGGTAGCTGTTGATCAGCTACTACTAGGCTGGTTATACAACTCAATGACTCCAGAGGTTGCAACCCAAGTGATGGAGTCGAGAATGCCAAGGATCTTTGGTCAGCCATTCAAGAATTATTTGGGGTTCAATCACGAGCCGAGGAAGACTTCTTACGCCAAACCTTTCAACAAACCAGAAAAGGTAACTTAA

Coding sequence (CDS)

ATGACCAACGTCTTCTCAAACACAACAAATGCCATGGCCGCCAGAGCTACAACGTTCAGCAGCCCTCCTTATCAGCTACTCAATCAAATAACCTCCATCAAGCTTGATCGTGGGAACTTTCTCTTGTGGAAGAATCTTGCACTTCCAATCCTCCGAAGCTATAAGTTGGAAGGACACTTACTGGGTACTAAACCATGCCCGCCGATGATGATTCCTCAAGCAGCTGAAACGGCGAATACAAATTTGACCACTGATGTAGCGGCAGAAGCTTCGAGCTCAGGAGCGACTGCAAGCGGCGATGTGTCCTCTCGACTCGAGTCCAGTTTGGTGGTAAATCCCCAATATGAAGCCTGGGTAGCTGTTGATCAGCTACTACTAGGCTGGTTATACAACTCAATGACTCCAGAGGTTGCAACCCAAGTGATGGAGTCGAGAATGCCAAGGATCTTTGGTCAGCCATTCAAGAATTATTTGGGGTTCAATCACGAGCCGAGGAAGACTTCTTACGCCAAACCTTTCAACAAACCAGAAAAGGTAACTTAA

Protein sequence

MTNVFSNTTNAMAARATTFSSPPYQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLLGTKPCPPMMIPQAAETANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWVAVDQLLLGWLYNSMTPEVATQVMESRMPRIFGQPFKNYLGFNHEPRKTSYAKPFNKPEKVT
Homology
BLAST of Lag0013519 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = 0

Query: 19  FSSPPY-QLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLLGTKPCPPM-MIPQAAE 78
           F+SPP  QLLNQITSIK+DRGNFLLW+NLALPILRSYKL  +L G KPCPP  ++P    
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVP---- 81

Query: 79  TANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWVAVDQLLLGWLYNSMTPE 138
              T+  T++    SS             +SS  +NP YEAW+ VD+LLLGWLYNSM  +
Sbjct: 82  ---TDTPTNIEGSTSS-------------QSSPTLNPTYEAWIVVDKLLLGWLYNSMAAD 127

Query: 139 VATQVM 143
           VA QVM
Sbjct: 142 VAMQVM 127

BLAST of Lag0013519 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 9.9e-25
Identity = 71/135 (52.59%), Postives = 85/135 (62.96%), Query Frame = 0

Query: 9   TNAMAARATTFSSPPY-QLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLLGTKPCP 68
           T +    +T FS+PP  QLLNQIT+ KL+RG F+LWK LALPILR YKLE HL GTK C 
Sbjct: 7   TGSSIGESTKFSTPPLNQLLNQITNTKLERGYFMLWKTLALPILRGYKLERHLSGTKICS 66

Query: 69  PMMIPQAAETANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWVAVDQLLLG 128
           PM       T  +  T D  ++AS   ++A+G+           NP YE WV  DQLLLG
Sbjct: 67  PMF---TVSTIPSIETGDFGSQASGGASSATGE--------RTFNPLYEVWVTADQLLLG 126

Query: 129 WLYNSMTPEVATQVM 143
           W YNSMTPEVA Q+M
Sbjct: 127 WPYNSMTPEVAVQLM 130

BLAST of Lag0013519 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 0

Query: 1   MTNVFSNTTNAMAARATTFSSPPY-QLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGH 60
           M N      + +   AT+F++PP  Q+LNQ+T+IKLDR N+LLWK LALPIL+ YKLEGH
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60

Query: 61  LLGTKPCPPMMIPQAAETANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWV 120
           L G KPCP   +   +   +    T+   +            SS + +  ++NP +E W+
Sbjct: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQI--ASSSMSAPAIINPLFEQWI 120

Query: 121 AVDQLLLGWLYNSMTPEVATQVM 143
             D LLLGWLYNSMTP+VA Q+M
Sbjct: 121 MTDLLLLGWLYNSMTPKVAVQLM 141

BLAST of Lag0013519 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-24
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 0

Query: 19  FSSPPY-QLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLLGTKPCPPMMIPQAAET 78
           FS+PP  Q+LNQ+T++KLDR N+LLWK LALPIL+ YKLEGHL    PCP   +  +A +
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV-LSASS 77

Query: 79  ANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWVAVDQLLLGWLYNSMTPEV 138
           +NT +T +        GA A+   SS + +  +VNP +E WV  D LLLGWLYNSMTP+V
Sbjct: 78  SNTTVTEE--------GADATIGASSSI-TPRIVNPLFEQWVTTDLLLLGWLYNSMTPDV 132

Query: 139 ATQVM 143
           A Q+M
Sbjct: 138 AIQLM 132

BLAST of Lag0013519 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-24
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 0

Query: 19  FSSPPY-QLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLLGTKPCPPMMIPQAAET 78
           FS+PP  Q+LNQ+T++KLDR N+LLWK LALPIL+ YKLEGHL    PCP   +  +A +
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV-LSASS 77

Query: 79  ANTNLTTDVAAEASSSGATASGDVSSRLESSLVVNPQYEAWVAVDQLLLGWLYNSMTPEV 138
           +NT +T +        GA A+   SS + +  +VNP +E WV  D LLLGWLYNSMTP+V
Sbjct: 78  SNTTVTEE--------GADATIGASSSI-TPRIVNPLFEQWVTTDLLLLGWLYNSMTPDV 132

Query: 139 ATQVM 143
           A Q+M
Sbjct: 138 AIQLM 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151683.11.5e-2556.35uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_038887015.19.9e-2552.59uncharacterized protein LOC120077182 [Benincasa hispida][more]
KAA0066132.11.7e-2444.76putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
XP_016902203.14.9e-2452.80PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902205.14.9e-2452.80PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013519.1Lag0013519.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process