Lag0013498 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013498
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRING-type domain-containing protein
Locationchr1: 50763712 .. 50764278 (+)
RNA-Seq ExpressionLag0013498
SyntenyLag0013498
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA

mRNA sequence

ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA

Coding sequence (CDS)

ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA

Protein sequence

MNSVQDLGYSYRRLLKDSLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQLNPSPSKPLISTSSIQLTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDELRVLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFGLGSNIPLPSQL
Homology
BLAST of Lag0013498 vs. NCBI nr
Match: XP_038881295.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 3.1e-85
Identity = 157/189 (83.07%), Postives = 167/189 (88.36%), Query Frame = 0

Query: 1   MNSVQDLGYSYRRLLKDSLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQLN 60
           MNSV  LGYSYRRLLKDSLFEHPFG RERIVTI  TS+I AMFV SL ISLFTCFR QLN
Sbjct: 1   MNSVDYLGYSYRRLLKDSLFEHPFGNRERIVTICATSVIAAMFVISLFISLFTCFRHQLN 60

Query: 61  PSPSKPLISTSSIQLTTIPVYIYGDSSSNP-PSYCFTSSFESRNCVICLAEFENGDELRV 120
              SKP  STSS QLTT+PVYIYGD SS+P  SYCFTSSFE RNCVICLAEF++GDELRV
Sbjct: 61  SPSSKPPPSTSSSQLTTMPVYIYGDVSSSPSSSYCFTSSFEPRNCVICLAEFKHGDELRV 120

Query: 121 LPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFGLG 180
           LPNCKHAFHKGCIDQWLLLRSLLCPLCRD   E+IGTMRRP+C+NYWARNPAF+LAFGLG
Sbjct: 121 LPNCKHAFHKGCIDQWLLLRSLLCPLCRDHTTEEIGTMRRPICSNYWARNPAFILAFGLG 180

Query: 181 SNIPLPSQL 189
           SN+PLPSQL
Sbjct: 181 SNVPLPSQL 189

BLAST of Lag0013498 vs. NCBI nr
Match: XP_011658497.1 (E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79
Identity = 154/190 (81.05%), Postives = 162/190 (85.26%), Query Frame = 0

Query: 1   MNSVQDLGYSYRRLLKDSLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQLN 60
           MNSV DLGYS RRLLKDSLFE PFG RERIVTI  TS I A+FV SL ISLFTCFRRQLN
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  PSPSKPLISTSSIQ-LTTIPVYIYGDSSSN-PPSYCFTSSFESRNCVICLAEFENGDELR 120
              SKPL ST S Q LTT+PVYIYGDSSSN P SYCFT SFESR CVICLAEFE GDELR
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT-SFESRTCVICLAEFEYGDELR 120

Query: 121 VLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFGL 180
           VLPNCKH FHKGCIDQWL LRSLLCPLCR+  I++I TMRRPVC+NYW+RNPAF+LAFGL
Sbjct: 121 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 180

Query: 181 GSNIPLPSQL 189
           GSN PLPSQL
Sbjct: 181 GSNAPLPSQL 189

BLAST of Lag0013498 vs. NCBI nr
Match: KAA0025673.1 (RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa])

HSP 1 Score: 303.9 bits (777), Expect = 9.6e-79
Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0

Query: 1   MNSVQDLGYSYRRLLKD-SLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQL 60
           MNSV DLGYS RRLLKD SLFE PFG RERIVTI  TS I A+FV SL ISLFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NPSPSKPLISTSSIQ-LTTIPVYIYGDSSSN-PPSYCFTSSFESRNCVICLAEFENGDEL 120
           N   SKPL ST S Q LTT+PVYIYGDSSSN P SYCFT SFESRNCVICLAEFE GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT-SFESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFG 180
           RVLPNCKH FHKGCIDQWL LRSLLCPLCR+  I++I TMRRP+C+NYWARNPAF+LAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSNIPLPSQL 189
           LGSN PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

BLAST of Lag0013498 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 9.6e-79
Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0

Query: 1   MNSVQDLGYSYRRLLKD-SLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQL 60
           MNSV DLGYS RRLLKD SLFE PFG RERIVTI  TS I A+FV SL ISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NPSPSKPLISTSSIQ-LTTIPVYIYGDSSSN-PPSYCFTSSFESRNCVICLAEFENGDEL 120
           N   SKPL ST S Q LTT+PVYIYGDSSSN P SYCFT SFESRNCVICLAEFE GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT-SFESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFG 180
           RVLPNCKH FHKGCIDQWL LRSLLCPLCR+  I++I TMRRP+C+NYWARNPAF+LAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSNIPLPSQL 189
           LGSN PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

BLAST of Lag0013498 vs. NCBI nr
Match: XP_022133218.1 (RING-H2 finger protein ATL79-like [Momordica charantia])

HSP 1 Score: 288.1 bits (736), Expect = 5.4e-74
Identity = 143/190 (75.26%), Postives = 161/190 (84.74%), Query Frame = 0

Query: 1   MNSVQDLGYSYRRLLKDSLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQLN 60
           MNS+Q+LG SYRRLLKDS+FEHPFG RER +TI VTSLIVA+FVFSL IS  TCFRR++N
Sbjct: 1   MNSLQELGSSYRRLLKDSIFEHPFGSRERSITICVTSLIVAVFVFSLFISFLTCFRRRMN 60

Query: 61  P-SPSKPLISTSSIQLTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDELRV 120
           P S SKP  S+ S QLTT+PVYIYGDSS NP      SSFES+NCVICLAEFE+GDE+RV
Sbjct: 61  PSSSSKPPTSSCSTQLTTMPVYIYGDSSLNP------SSFESKNCVICLAEFEHGDEVRV 120

Query: 121 LPNCKHAFHKGCIDQWLLLRSLLCPLCRD-RIIEDIGTMRRPVCTNYWARNPAFLLAFGL 180
           LPNC+HAFHKGCIDQWL L SLLCPLCRD    E+I TMRRP CTN WARNPAF+LAFGL
Sbjct: 121 LPNCRHAFHKGCIDQWLQLMSLLCPLCRDCTTEEEIRTMRRPNCTNDWARNPAFILAFGL 180

Query: 181 GSNIPLPSQL 189
           GSN+P+PSQ+
Sbjct: 181 GSNMPVPSQM 184

BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 75  LTTIPVYIYGDSS-SNPPSYCFTSSFESRNCVICLAEFENGDELRVLPNCKHAFHKGCID 134
           + T+P+++Y  ++ +  P+   TS+   R+C +CL EFE GD +R LP C HAFH  CID
Sbjct: 126 IKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECID 185

Query: 135 QWLLLRSLLCPLCRDRIIEDIGTM 158
           +WL      CPLCR  I+   G +
Sbjct: 186 EWLRSHP-NCPLCRTAILGSAGVL 208

BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.5e-13
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 75  LTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDELRVLPNCKHAFHKGCIDQ 134
           + T+PV+ Y  S     +Y F       +C +CL EFE  D+LR+LP C HAFH  CID 
Sbjct: 113 IDTLPVFHY-KSIIGLKNYPF-------DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 172

Query: 135 WLLLRSLLCPLCRDRIIEDIGTMRRP 161
           WLL  S  CPLCR  ++ D+ + + P
Sbjct: 173 WLLSHS-TCPLCRSSLLSDLSSHQDP 189

BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.1e-12
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 57  RQLNPSPSKPLISTSSIQLTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDE 116
           R L+ SP    +  +   L  IP+++Y  SS NPP        E   C +CL+EFE  DE
Sbjct: 70  RTLSASPRDQALDQA--VLDKIPIFVY--SSKNPP-----PPEEKEECSVCLSEFEEEDE 129

Query: 117 LRVLPNCKHAFHKGCIDQWLLLRSLLCPLCR 148
            R+LP C H+FH  CID W   RS  CPLCR
Sbjct: 130 GRLLPKCGHSFHVDCIDTWFRSRS-TCPLCR 150

BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 98  SFESRNCVICLAEFENGDELRVLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRI 151
           S +  +C +CL++FE+ + LR+LP C+HAFH GCIDQW L +   CPLCRDR+
Sbjct: 117 SKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQW-LEQHATCPLCRDRV 168

BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 75  LTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDELRVLPNCKHAFHKGCIDQ 134
           L  IPV +YG               ++  C+ICL +FE+G+++RVLP C H FH  CID 
Sbjct: 94  LKQIPVGLYGSG---------IIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 153

Query: 135 WLLLRSLLCPLCRDRII 152
           WLL RS  CP CR  ++
Sbjct: 154 WLLSRS-SCPTCRQSLL 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881295.13.1e-8583.07RING-H2 finger protein ATL79-like [Benincasa hispida][more]
XP_011658497.11.9e-7981.05E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
KAA0025673.19.6e-7981.15RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2... [more]
XP_008440820.19.6e-7981.15PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo][more]
XP_022133218.15.4e-7475.26RING-H2 finger protein ATL79-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q67YI65.5e-1341.67RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2[more]
Q940Q49.5e-1343.02RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2[more]
O222556.1e-1243.96RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1[more]
Q5XF852.3e-1154.72E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ... [more]
Q9SG962.3e-1142.86RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 104..146
e-value: 6.9E-8
score: 42.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 103..147
e-value: 2.6E-13
score: 50.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 104..147
score: 12.312242
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 76..154
e-value: 7.4E-19
score: 68.7
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 13..185
NoneNo IPR availablePANTHERPTHR45798:SF35OS11G0149500 PROTEINcoord: 13..185
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 103..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013498.1Lag0013498.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane