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Lag0013498 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA ATGAATTCAGTGCAAGATCTCGGTTACAGTTACCGACGCCTTTTGAAAGATTCCTTATTCGAACATCCATTTGGAGGCCGAGAAAGAATCGTTACCATATCTGTGACATCTCTCATCGTTGCCATGTTCGTATTCTCTTTATTAATCTCCCTCTTCACCTGCTTCCGGCGTCAATTGAACCCCTCTCCCTCTAAACCTCTCATATCCACAAGTAGCATCCAACTCACTACCATACCTGTATATATCTATGGTGATTCGTCTTCAAATCCACCGTCTTATTGTTTTACGTCGTCGTTCGAGTCCAGGAACTGTGTCATATGTTTGGCGGAGTTCGAAAATGGAGATGAGCTTCGTGTTCTGCCTAACTGTAAGCATGCGTTTCATAAAGGTTGCATTGATCAATGGCTTCTGTTGAGGTCGTTGCTTTGCCCACTTTGCCGGGACCGAATAATAGAGGACATTGGGACCATGAGGAGACCCGTTTGTACGAATTATTGGGCCCGAAATCCGGCCTTCTTATTGGCCTTCGGCCTTGGTAGTAATATTCCACTGCCCTCCCAGTTGTAA MNSVQDLGYSYRRLLKDSLFEHPFGGRERIVTISVTSLIVAMFVFSLLISLFTCFRRQLNPSPSKPLISTSSIQLTTIPVYIYGDSSSNPPSYCFTSSFESRNCVICLAEFENGDELRVLPNCKHAFHKGCIDQWLLLRSLLCPLCRDRIIEDIGTMRRPVCTNYWARNPAFLLAFGLGSNIPLPSQL Homology
BLAST of Lag0013498 vs. NCBI nr
Match: XP_038881295.1 (RING-H2 finger protein ATL79-like [Benincasa hispida]) HSP 1 Score: 325.5 bits (833), Expect = 3.1e-85 Identity = 157/189 (83.07%), Postives = 167/189 (88.36%), Query Frame = 0
BLAST of Lag0013498 vs. NCBI nr
Match: XP_011658497.1 (E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]) HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79 Identity = 154/190 (81.05%), Postives = 162/190 (85.26%), Query Frame = 0
BLAST of Lag0013498 vs. NCBI nr
Match: KAA0025673.1 (RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa]) HSP 1 Score: 303.9 bits (777), Expect = 9.6e-79 Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0
BLAST of Lag0013498 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo]) HSP 1 Score: 303.9 bits (777), Expect = 9.6e-79 Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0
BLAST of Lag0013498 vs. NCBI nr
Match: XP_022133218.1 (RING-H2 finger protein ATL79-like [Momordica charantia]) HSP 1 Score: 288.1 bits (736), Expect = 5.4e-74 Identity = 143/190 (75.26%), Postives = 161/190 (84.74%), Query Frame = 0
BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2) HSP 1 Score: 75.9 bits (185), Expect = 5.5e-13 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0
BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 9.5e-13 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0
BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.1e-12 Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 0
BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Lag0013498 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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