Lag0013493 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTGCTTTCGTCTTCCTTCTAACATTTGTTATGCCATTGACAGGTTATGCGCCAACTTTTGGTGGGGTTCGGTGGGAAACAAATCCAAATGTCACTGGATGAACCGGAAGAAAATGTGCTCAAACAAGGAAGAGGGAGGTTTGGGATTTAGACAACTCTCTTTGTTCAACCAAGCTATGTTGGCTAAGCTTAGCTGGAGAATTTTGGGCGACCAAAATAGCCTTATTTTCAAAGTGTTAAGGGGGAGATACTTCAAAGACTCGTGCTTCCTAAAGGCCAAGCTAAGGAATGACTCTTCCCTCACCTGGAGAAGTATCTGTTGGGGAAGAGATCTTTTTAAAAAAGGCTATCGTTGGAAAGTGGGCAACGAGAAGCAGATTGTGATCGACAAAGATCTGTGGATAGGAGGCAACAATCTACACCCAAGGATTATGAATGATTCCCTCAAAGATAATTATGTTAGTAGCCTTATTGAGGAGAATATGTCCGGGAAATAAGATCTTATCAAGGCTAGTTTCTCCCCTGAAGCTGCTGACGACATCTTGAAGATCCCTTTGGGCGATATCAATTCAAAGGACAAGATTATCTGGACTTATGACAAAAAAGGAACCTTCTCTGTGAAGAGTGCCTATAGGCTAGCCCAAGCCAATTGCCCTTTACAAGAGACTTCTCAATCTGACACTTCAAAGACGGTTGGTCTTTGGAAAAACCTCCGGAAAACAGACACTATCCCGAGAGCTAAGCTGTGCGCGTGGATGATTATCAACAATATCATTTCTACCAAAGCTAACATTGCTTGAAAAGAAATAGCCATCATCCCTATTTGTGACCTGTGTAGGAAGCATTATGAGACCTCTAGCCACACCATTTGGGAGTGTAAGCTTTCTAAAGGAATTTGGAAAATTTTCATTCCGTCCTCATTGGGGATTTTTTCTCTTTGCAGGGAAGATTGGTCTCCCATGGACTACTGGAATTGGTTGGTGGACAACGGTAGTAGAGAAAATCTTTCAAAAGAAGTTCTCATTATGTGGTCAATCTGGAATTTTAGAAACAAATCGAGGGCTCTCAAGCTAAAACCAGAATCAATCTACTCATCTATTGAAGCTATTTTAGAAGAAAATGAGTCTAAGAACCTGATTTCTCGGAAGCCCGTCAGGCTGAGGAGCCAAATGAGTCAAGTTCCCTAG ATGAGTTGCTTTCGTCTTCCTTCTAACATTTGTTATGCCATTGACAGGTTATGCGCCAACTTTTGGTGGGGTTCGGTGGGAAACAAATCCAAATGTCACTGGATGAACCGGAAGAAAATGTGCTCAAACAAGGAAGAGGGAGGTTTGGGATTTAGACAACTCTCTTTGTTCAACCAAGCTATGTTGGCTAAGCTTAGCTGGAGAATTTTGGGCGACCAAAATAGCCTTATTTTCAAAGTGTTAAGGGGGAGATACTTCAAAGACTCGTGCTTCCTAAAGGCCAAGCTAAGGAATGACTCTTCCCTCACCTGGAGAAGTATCTGTTGGGGAAGAGATCTTTTTAAAAAAGGCTATCGTTGGAAAGTGGGCAACGAGAAGCAGATTGTGATCGACAAAGATCTGTGGATAGGAGGCAACAATCTACACCCAAGGATTATGAATGATTCCCTCAAAGATAATTATATCCCTTTGGGCGATATCAATTCAAAGGACAAGATTATCTGGACTTATGACAAAAAAGGAACCTTCTCTGTGAAGAGTGCCTATAGGCTAGCCCAAGCCAATTGCCCTTTACAAGAGACTTCTCAATCTGACACTTCAAAGACGGTTGGTCTTTGGAAAAACCTCCGGAAAACAGACACTATCCCGAGAGCTAAGCTGGAAGATTGGTCTCCCATGGACTACTGGAATTGGTTGGTGGACAACGGTAGTAGAGAAAATCTTTCAAAAGAAGTTCTCATTATGTGGTCAATCTGGAATTTTAGAAACAAATCGAGGGCTCTCAAGCTAAAACCAGAATCAATCTACTCATCTATTGAAGCTATTTTAGAAGAAAATGAGTCTAAGAACCTGATTTCTCGGAAGCCCGTCAGGCTGAGGAGCCAAATGAGTCAAGTTCCCTAG ATGAGTTGCTTTCGTCTTCCTTCTAACATTTGTTATGCCATTGACAGGTTATGCGCCAACTTTTGGTGGGGTTCGGTGGGAAACAAATCCAAATGTCACTGGATGAACCGGAAGAAAATGTGCTCAAACAAGGAAGAGGGAGGTTTGGGATTTAGACAACTCTCTTTGTTCAACCAAGCTATGTTGGCTAAGCTTAGCTGGAGAATTTTGGGCGACCAAAATAGCCTTATTTTCAAAGTGTTAAGGGGGAGATACTTCAAAGACTCGTGCTTCCTAAAGGCCAAGCTAAGGAATGACTCTTCCCTCACCTGGAGAAGTATCTGTTGGGGAAGAGATCTTTTTAAAAAAGGCTATCGTTGGAAAGTGGGCAACGAGAAGCAGATTGTGATCGACAAAGATCTGTGGATAGGAGGCAACAATCTACACCCAAGGATTATGAATGATTCCCTCAAAGATAATTATATCCCTTTGGGCGATATCAATTCAAAGGACAAGATTATCTGGACTTATGACAAAAAAGGAACCTTCTCTGTGAAGAGTGCCTATAGGCTAGCCCAAGCCAATTGCCCTTTACAAGAGACTTCTCAATCTGACACTTCAAAGACGGTTGGTCTTTGGAAAAACCTCCGGAAAACAGACACTATCCCGAGAGCTAAGCTGGAAGATTGGTCTCCCATGGACTACTGGAATTGGTTGGTGGACAACGGTAGTAGAGAAAATCTTTCAAAAGAAGTTCTCATTATGTGGTCAATCTGGAATTTTAGAAACAAATCGAGGGCTCTCAAGCTAAAACCAGAATCAATCTACTCATCTATTGAAGCTATTTTAGAAGAAAATGAGTCTAAGAACCTGATTTCTCGGAAGCCCGTCAGGCTGAGGAGCCAAATGAGTCAAGTTCCCTAG MSCFRLPSNICYAIDRLCANFWWGSVGNKSKCHWMNRKKMCSNKEEGGLGFRQLSLFNQAMLAKLSWRILGDQNSLIFKVLRGRYFKDSCFLKAKLRNDSSLTWRSICWGRDLFKKGYRWKVGNEKQIVIDKDLWIGGNNLHPRIMNDSLKDNYIPLGDINSKDKIIWTYDKKGTFSVKSAYRLAQANCPLQETSQSDTSKTVGLWKNLRKTDTIPRAKLEDWSPMDYWNWLVDNGSRENLSKEVLIMWSIWNFRNKSRALKLKPESIYSSIEAILEENESKNLISRKPVRLRSQMSQVP Homology
BLAST of Lag0013493 vs. NCBI nr
Match: XP_030479238.1 (uncharacterized protein LOC115696478 [Cannabis sativa]) HSP 1 Score: 191.4 bits (485), Expect = 1.1e-44 Identity = 105/254 (41.34%), Postives = 138/254 (54.33%), Query Frame = 0
BLAST of Lag0013493 vs. NCBI nr
Match: XP_030494695.1 (uncharacterized protein LOC115710475 [Cannabis sativa]) HSP 1 Score: 187.2 bits (474), Expect = 2.1e-43 Identity = 106/254 (41.73%), Postives = 141/254 (55.51%), Query Frame = 0
BLAST of Lag0013493 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia]) HSP 1 Score: 184.5 bits (467), Expect = 1.3e-42 Identity = 93/240 (38.75%), Postives = 128/240 (53.33%), Query Frame = 0
BLAST of Lag0013493 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia]) HSP 1 Score: 184.1 bits (466), Expect = 1.8e-42 Identity = 98/215 (45.58%), Postives = 126/215 (58.60%), Query Frame = 0
BLAST of Lag0013493 vs. NCBI nr
Match: XP_030479464.1 (uncharacterized protein LOC115696715 [Cannabis sativa]) HSP 1 Score: 183.3 bits (464), Expect = 3.0e-42 Identity = 103/253 (40.71%), Postives = 132/253 (52.17%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.0e-24 Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.2e-23 Identity = 73/223 (32.74%), Postives = 109/223 (48.88%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy TrEMBL
Match: A0A803QI38 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44 Identity = 102/253 (40.32%), Postives = 133/253 (52.57%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy TrEMBL
Match: A0A803PV88 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 7.7e-44 Identity = 101/253 (39.92%), Postives = 136/253 (53.75%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy TrEMBL
Match: A0A803NMW0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43 Identity = 102/268 (38.06%), Postives = 145/268 (54.10%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 6.5e-43 Identity = 93/240 (38.75%), Postives = 128/240 (53.33%), Query Frame = 0
BLAST of Lag0013493 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.5e-43 Identity = 98/215 (45.58%), Postives = 126/215 (58.60%), Query Frame = 0
BLAST of Lag0013493 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 115.5 bits (288), Expect = 7.2e-26 Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 0
BLAST of Lag0013493 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 105.1 bits (261), Expect = 9.7e-23 Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 0
BLAST of Lag0013493 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 53.9 bits (128), Expect = 2.6e-07 Identity = 40/137 (29.20%), Postives = 55/137 (40.15%), Query Frame = 0
BLAST of Lag0013493 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.7e-06 Identity = 36/116 (31.03%), Postives = 55/116 (47.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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