Lag0013456 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013456
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein translocase subunit
Location	chr1: 50421545 .. 50423968 (-)
RNA-Seq Expression	Lag0013456
Synteny	Lag0013456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTTGGAGTCCTAAGATCCATCGTCCGACCGCTAACGAGGACCTTCAGATCACCTCCTTCCACTTCCCTACCACCATTTTCGTCCACTTTCACTTCCCCTAAACCAGGGTTTCGTCTCCCTTCTGCTAGCTCATTTGGAACTGAAGCTCCTTGGTTTCCAATTGCGAATCACTTCCACAGTTTGAACGAAACTCGGTTTCCCAAGAGACGGCCCAGTGATAAACCTCGTCGGAAAAGGGCGAGCTTGAGACCCCCAGGTTCGTTATTTCGTGGAAGTTTAGCTTATCGGTTTACAATGTGCCTTCTATTGGAAGTTCGATTCCATGAATTGATGGTTTCAAACGCTTTTTGCTGAATGCCAGGGCCGTATGCTTGGGTTCAATATACCCCTGGCGAACCAATTCTGCCTAATCAACCGAATGAAGGAAGCGTGAAAAGAAGGAATGAGAAGAAACGCATTAGGCTGCACCGCGCGTTTATTATGGTTTGTATCTCATATCTAATGAATTTTGAAGTAATGTTTCGCGATATTGCTCTTTTTACTTGTTTCTTAGAGACTTTAAATTTATTGGTTCTTTCTAGTAACCATTGCTATGTTTTGATGTATGAATGTTCTAAAGAATTATCAATTACTGGAGCTACTGGAAGTTTGAAAATTAAAATGTCCTGGCCAATTGGTAGATGGTTTTATGTTGACCTGTGCTAAACTATCTTGTGAACTACATATTCTAGCTGAATTAATACGTGACTGAAAAGGGTTATTCTTAGAGCTGCACTGTTCTAATAATTAAACTCCAAGTTTTAGAAGTTACTTCGAGATGGGGAAGGGGCCTGTAAGGTGAAATTGTGGAAGCTTCCAAACTTGTATAGGATATAGGAATCTTATTGTTTTGAACTTCCAGTAACTTCCTGGTTTCTGGATTCTTCATTATTGTTTATGATTTAATTGGCCATCTCATCTTGTACACCCTTCACATTTGTTCTGGAATCAGTTTGTTGCCTTAAGATTTTTGTATATAGAAAATCCCATAATCTTTTGTTTTTAAATTAGGCATTATTTTGTTTTTTTTTTGTCCTATCAAAAAAATCATTCCTTGCGTGTTCTTTTTTCCAATGTACCAAATACTAGATCATGTTATGTTTGTTCAAGTAATTATTGGTTTTTAGATCAAATTTTGTAATTACAGTTTGCTTCTTGGACATGAATGTTGATTGTCCAATTCATATGGAACAACAAATCCGAGTTTGCATCCAATGACTAAACTAGATTTTTCATGTTAATTTAAGGTTTCCATTTAGTTCGAAATTTCCAGCTTGAACTATGTAAAAAAACTAGTTTGTTACTCTTCTAGAAGAAGGATAGAAATATATCCCAGTGACCTTGCAACTTTCAAACCATTCTAATACACAATTGAGGAAATACTAATTCTCTGTGCCTACATTTTCATGCACTATGATTTCCATATCGAAACACTCTTGACTGTAAACTTCTTATGATTAATTTGAGGCTTTTGCATCATCAAATTATTCTGATGTCTATTACCTTCTTTGATGTCATTATTGAAGGCTTGTCATGCTTGTTGATCAATAGTTGCCGATGTTACTTTTGGGGGTAAAATGGTATTATCACGACTTGGTTACTTCTGTGCATCACGGTCAAGTGTTCTAATTTCAATTTGGATAGGACTTGATCCACAATCAAAGGCTGCTTTGTGAAGCTTACAGTTATAGATATCTTCAATCTGAAATGATTTCATCTGTGAAGCATTCTATTTGACTAGAAAATGAAACATGGTATCTTATATCTATGTTGACACTCCTGTTTTGATATTATGGATCCGGATGAGTGCTGTACTGAAAATCCAAACTTTTTCCATTTTTATTCCCAAAAGTTTCTACTTTATGCCATACTGGCATTCGCATGTTTTATTCATCAAACATGTGCTACAATTAAAAATTCCACGAGCTCCAAGTAGTAACTCTAAACTCTCCCTGATAAGTTCTTTAAAGACAAAGATGGATACCAATAATATTCCAAGAGAAAATATTTCCAAACTTTTCTGATGTTGAAATATGATTAAGTCGTGCTTTGCACGCATTCACGTTTCCAAATCATTTTGCTGGATTGGCTACTTACAGAGTTACAGTGTCGAGAGTCTGATGACTGATATAGCTTTTTGAAATTTGTCCACTTCTCTTTAAGAGAATACATTTATTTACCATTACCAAAAGATTGGCTCTTTTGCATGTGCAGGCTGAAAAAAAGAAGCGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAATTATCAAGAGAGTGGAACGAAAAATGGCTGCAGTAGCAAGGGAAAGAGCATGGGCTCAAAGATTAGCCGAACTTCAACAGCTCGAAGAAGAGAAGAAAAAATCAATGCAATAG

mRNA sequence

ATGGGGCTTGGAGTCCTAAGATCCATCGTCCGACCGCTAACGAGGACCTTCAGATCACCTCCTTCCACTTCCCTACCACCATTTTCGTCCACTTTCACTTCCCCTAAACCAGGGTTTCGTCTCCCTTCTGCTAGCTCATTTGGAACTGAAGCTCCTTGGTTTCCAATTGCGAATCACTTCCACAGTTTGAACGAAACTCGGTTTCCCAAGAGACGGCCCAGTGATAAACCTCGTCGGAAAAGGGCGAGCTTGAGACCCCCAGGGCCGTATGCTTGGGTTCAATATACCCCTGGCGAACCAATTCTGCCTAATCAACCGAATGAAGGAAGCGTGAAAAGAAGGAATGAGAAGAAACGCATTAGGCTGCACCGCGCGTTTATTATGGCTGAAAAAAAGAAGCGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAATTATCAAGAGAGTGGAACGAAAAATGGCTGCAGTAGCAAGGGAAAGAGCATGGGCTCAAAGATTAGCCGAACTTCAACAGCTCGAAGAAGAGAAGAAAAAATCAATGCAATAG

Coding sequence (CDS)

ATGGGGCTTGGAGTCCTAAGATCCATCGTCCGACCGCTAACGAGGACCTTCAGATCACCTCCTTCCACTTCCCTACCACCATTTTCGTCCACTTTCACTTCCCCTAAACCAGGGTTTCGTCTCCCTTCTGCTAGCTCATTTGGAACTGAAGCTCCTTGGTTTCCAATTGCGAATCACTTCCACAGTTTGAACGAAACTCGGTTTCCCAAGAGACGGCCCAGTGATAAACCTCGTCGGAAAAGGGCGAGCTTGAGACCCCCAGGGCCGTATGCTTGGGTTCAATATACCCCTGGCGAACCAATTCTGCCTAATCAACCGAATGAAGGAAGCGTGAAAAGAAGGAATGAGAAGAAACGCATTAGGCTGCACCGCGCGTTTATTATGGCTGAAAAAAAGAAGCGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAATTATCAAGAGAGTGGAACGAAAAATGGCTGCAGTAGCAAGGGAAAGAGCATGGGCTCAAAGATTAGCCGAACTTCAACAGCTCGAAGAAGAGAAGAAAAAATCAATGCAATAG

Protein sequence

MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHFHSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRIRLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKSMQ

Homology

[Close]

BLAST of Lag0013456 vs. NCBI nr
Match: XP_022132599.1 (uncharacterized protein LOC111005424 [Momordica charantia])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 159/182 (87.36%), Postives = 168/182 (92.31%), Query Frame = 0


Query: 1   MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHF 60
           MGLG+LRS+VRPLTRT RS PSTSL PF + FTSP+P F L S  S GT+APWFPIANHF
Sbjct: 1   MGLGMLRSVVRPLTRTLRSRPSTSLTPFPAAFTSPEPRFHLLSGGSVGTQAPWFPIANHF 60

Query: 61  HSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120
           HSL +TRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI
Sbjct: 61  HSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120

Query: 121 RLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKS 180
           RL RAFI+AEKKKRKAQ QEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEE+KKS
Sbjct: 121 RLRRAFILAEKKKRKAQFQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEERKKS 180

Query: 181 MQ 183
           M+
Sbjct: 181 ME 182

[Close]

BLAST of Lag0013456 vs. NCBI nr
Match: XP_038890999.1 (uncharacterized protein LOC120080411 [Benincasa hispida])

HSP 1 Score: 293.9 bits (751), Expect = 9.6e-76
Identity = 159/182 (87.36%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHF 60
           MGLG+LRSIVRPLTR  RS PSTSL PF S FTS KPGF LPSASS   EAPWF IANHF
Sbjct: 1   MGLGILRSIVRPLTRISRSRPSTSLTPFPSAFTSIKPGFHLPSASSVRIEAPWFSIANHF 60

Query: 61  HSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120
           HSL ETRFPKRRPSDKPRRKRASLRPPGPYAWV YTPGEPILPN PNEGSVKRRNEKKRI
Sbjct: 61  HSLTETRFPKRRPSDKPRRKRASLRPPGPYAWVPYTPGEPILPNHPNEGSVKRRNEKKRI 120

Query: 121 RLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKS 180
           RLHRAFIMAEKKKRKAQ+QEAKKKK+I RVERKMAAVARERAWA+RLAELQ+LEE KKKS
Sbjct: 121 RLHRAFIMAEKKKRKAQVQEAKKKKLIMRVERKMAAVARERAWAERLAELQKLEELKKKS 180

Query: 181 MQ 183
           M+
Sbjct: 181 ME 182

[Close]

BLAST of Lag0013456 vs. NCBI nr
Match: XP_023002923.1 (uncharacterized protein LOC111496683 [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 6.4e-72
Identity = 152/182 (83.52%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHF 60
           MGLG+LRS +RPLTRT  S P TSL P  S FTSPK GF L S  + GT+APWFPI+NHF
Sbjct: 1   MGLGILRSALRPLTRTLGSRPFTSLTPSPSAFTSPKSGFNLRSLGAVGTKAPWFPISNHF 60

Query: 61  HSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120
           +SL +TR PKRRPSDKPRRKRASLRPPGPYAWV+YTPGEPI PNQPNEGSVKRRNEKKRI
Sbjct: 61  NSLTDTRLPKRRPSDKPRRKRASLRPPGPYAWVKYTPGEPIQPNQPNEGSVKRRNEKKRI 120

Query: 121 RLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKS 180
           RL RAFI+AEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWA RLAELQQLEEEKKKS
Sbjct: 121 RLRRAFILAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWALRLAELQQLEEEKKKS 180

Query: 181 MQ 183
           M+
Sbjct: 181 MK 182

[Close]

BLAST of Lag0013456 vs. NCBI nr
Match: KAG7026769.1 (hypothetical protein SDJN02_10775 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHF 60
           MGLG+LRS +RPLTRT  S P TSL P  S FTSPK GF L S  + GT+APWFPI+NHF
Sbjct: 1   MGLGILRSALRPLTRTLGSRPFTSLTPSPSAFTSPKSGFNLRSLGAVGTKAPWFPISNHF 60

Query: 61  HSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120
           +SL +TRFPKRRPSDKPRRKRASLRPPGPYAWV+YTPGEPI PNQPNEGSVKRRNEKKRI
Sbjct: 61  NSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVKYTPGEPIQPNQPNEGSVKRRNEKKRI 120

Query: 121 RLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKS 180
           R  RAFI+AEKKKR+AQLQEA KKK+IKRVERKMAAVAR+RAWAQRLAELQ+LEEEKKKS
Sbjct: 121 RQRRAFILAEKKKRQAQLQEANKKKMIKRVERKMAAVARDRAWAQRLAELQRLEEEKKKS 180

Query: 181 MQ 183
           M+
Sbjct: 181 ME 182

[Close]

BLAST of Lag0013456 vs. NCBI nr
Match: XP_023518561.1 (uncharacterized protein LOC111782028 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-70
Identity = 147/182 (80.77%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MGLGVLRSIVRPLTRTFRSPPSTSLPPFSSTFTSPKPGFRLPSASSFGTEAPWFPIANHF 60
           MGLG+LRS +RPLTRT  S P TSL P  S FTSPK GF L S  + GT+APWFPI+NHF
Sbjct: 1   MGLGILRSALRPLTRTLGSRPFTSLTPSPSAFTSPKSGFNLRSLGAVGTKAPWFPISNHF 60

Query: 61  HSLNETRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRI 120
           +SL +TRFPKRRPSDKPRRKRASLRPPGPYAWV+YTPGEPI PNQPNEGSVKRRNEKKRI
Sbjct: 61  NSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVKYTPGEPIQPNQPNEGSVKRRNEKKRI 120

Query: 121 RLHRAFIMAEKKKRKAQLQEAKKKKIIKRVERKMAAVARERAWAQRLAELQQLEEEKKKS 180
           R  RAFI+AEKKKR++QLQEA KKK+IKRVERKMAAVAR+RAWAQRLAELQ+LEEEKKKS
Sbjct: 121 RQRRAFILAEKKKRQSQLQEANKKKMIKRVERKMAAVARDRAWAQRLAELQRLEEEKKKS 180

Query: 181 MQ 183
           M+
Sbjct: 181 ME 182

The following BLAST results are available for this feature:

BLAST of Lag0013456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132599.1	1.0e-77	87.36	uncharacterized protein LOC111005424 [Momordica charantia]	[more]
XP_038890999.1	9.6e-76	87.36	uncharacterized protein LOC120080411 [Benincasa hispida]	[more]
XP_023002923.1	6.4e-72	83.52	uncharacterized protein LOC111496683 [Cucurbita maxima]	[more]
KAG7026769.1	1.2e-70	81.32	hypothetical protein SDJN02_10775 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023518561.1	2.7e-70	80.77	uncharacterized protein LOC111782028 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0013456 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..115
None	No IPR available	PANTHER	PTHR36767	OS05G0126200 PROTEIN	coord: 1..181
None	No IPR available	PANTHER	PTHR36767:SF1	OS05G0126200 PROTEIN	coord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013456.1	Lag0013456.1	mRNA