Lag0013454 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013454
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAB hydrolase-1 domain-containing protein
Locationchr1: 50411794 .. 50412694 (-)
RNA-Seq ExpressionLag0013454
SyntenyLag0013454
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAATAGATTGGGAAGCAGTTTCCGGATGGCATATGAACTTGTTCAGACCTGATAAGGTCTAGGGCCCTGTGGCATTAACTGTTCCTTACTTTCCAAGATCTCCCGCAAACTAAACCTACTTATTCTATCAGACAATTAACTGGAGATGGTTCTCAGTGGTTCAGTTTCACAGACATTTTGTTTTATGCATTTCTTTTCTACAGGACTGAGTACTATAACTCCTTTGGACTTGTTTGTGAAGGAACCAGGACCAGGAAGAGCAGGGCTTAGTATTTGCTAAGTACGATTGCATGACTGTATTGAAGAAATGGTTGCTAATAGCAAAGAAAGAATCCATATCAGCTCCAGCTGCCACCATCAATAACTGAAGAGGAACGCCAAGTCCAAGTGTATGCCGATAACTTCGAGAAATCTAGCTTCACAGGTCCATTTAACTCCTATCGGGCTATGGCCATGTAAGCAATAACGAACAAGGATTCACATTTCTATTTTTCTGGTTACTCTCCAACAGGGTACAAAGGGGATCACAATGTGAACCAAATTTTCTTTTTTAAATTGCTTTAAAAAAATGATTTTTCTGGTTACTCTCCAACAGGGTACAAAGGGGATCACAATGTGAACCAAATTTTCTTTTTTAAATTGCTTTAAAAAAATGATAAAAATGAAGCTTGTTCATTATATTATGGTAACATGAATTGGGGGCTTTTGGCACCATGGCAGGGAAGTTAGGTCTCAACAAAATTTTTAGTAGGTGATCAAGATATTGGATTTGAATCAGCAGGAACCAAAGAATATGTGCAAGGAGATGTATTCAAGAGCCTCGTACCCGACCCTGAAGTTGTTATATTGGAGGCCACCATTTCATTCGACAGGAGAGAGCCCAGCAAGACTTAG

mRNA sequence

ATGGTGGGAATAGATTGGGAAGCAGTTTCCGGATGGCATATGAACTTGTTCAGACCTGATAAGCAAAGAAAGAATCCATATCAGCTCCAGCTGCCACCATCAATAACTGAAGAGGAACGCCAAGTCCAAGTGTATGCCGATAACTTCGAGAAATCTAGCTTCACAGGTGATCAAGATATTGGATTTGAATCAGCAGGAACCAAAGAATATGTGCAAGGAGATGTATTCAAGAGCCTCGTACCCGACCCTGAAGTTGTTATATTGGAGGCCACCATTTCATTCGACAGGAGAGAGCCCAGCAAGACTTAG

Coding sequence (CDS)

ATGGTGGGAATAGATTGGGAAGCAGTTTCCGGATGGCATATGAACTTGTTCAGACCTGATAAGCAAAGAAAGAATCCATATCAGCTCCAGCTGCCACCATCAATAACTGAAGAGGAACGCCAAGTCCAAGTGTATGCCGATAACTTCGAGAAATCTAGCTTCACAGGTGATCAAGATATTGGATTTGAATCAGCAGGAACCAAAGAATATGTGCAAGGAGATGTATTCAAGAGCCTCGTACCCGACCCTGAAGTTGTTATATTGGAGGCCACCATTTCATTCGACAGGAGAGAGCCCAGCAAGACTTAG

Protein sequence

MVGIDWEAVSGWHMNLFRPDKQRKNPYQLQLPPSITEEERQVQVYADNFEKSSFTGDQDIGFESAGTKEYVQGDVFKSLVPDPEVVILEATISFDRREPSKT
Homology
BLAST of Lag0013454 vs. NCBI nr
Match: KVI02881.1 (Alpha/beta hydrolase fold-1 [Cynara cardunculus var. scolymus])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 59/176 (33.52%), Postives = 74/176 (42.05%), Query Frame = 0

Query: 1   MVGIDWEAVSGWHMNLFRPDKQR------------------------KNPYQLQ------ 60
           +VG DW A + WH++LFRPDK +                        K  + ++      
Sbjct: 105 VVGHDWGATAAWHLSLFRPDKVKGMVAISEAGRAEKSFAKYDYLTVMKKFWMIEKVVSPP 164

Query: 61  -------------LPPSITEEERQVQVYADNFEKSSFT---------------------- 102
                        LPP ITEEE  +QVYAD F++S FT                      
Sbjct: 165 GMEFIDCLETPSVLPPWITEEE--LQVYADKFQESGFTGGLNYYRAMDLNWELQAPWQGS 224

BLAST of Lag0013454 vs. NCBI nr
Match: EOX90965.1 (Alpha/beta-Hydrolases superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 56/171 (32.75%), Postives = 73/171 (42.69%), Query Frame = 0

Query: 1   MVGIDWEAVSGWHMNLFRPDKQR-----------KNP------------------YQLQ- 60
           +VG DW AV  WH+ LFRP++ +           +NP                   Q Q 
Sbjct: 97  VVGHDWGAVIAWHLCLFRPERVKGLINISVPYFDRNPKAKYADALIRTYGDGFYISQFQT 156

Query: 61  --------------------LPPSITEEERQVQVYADNFEKSSFT--------------- 90
                               +PP ITEEE  +QVYAD F++S FT               
Sbjct: 157 DNLIAPPGVEIIDYLQTPSWIPPWITEEE--IQVYADKFQESGFTGGFNYYRAMNWNWEL 216

BLAST of Lag0013454 vs. NCBI nr
Match: CAN65368.1 (hypothetical protein VITISV_021974 [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 53/175 (30.29%), Postives = 73/175 (41.71%), Query Frame = 0

Query: 1   MVGIDWEAVSGWHMNLFRPDKQR-KNPYQLQ----------------------------- 60
           +VG DW AV+ WH++LFRPD+ +   P + +                             
Sbjct: 98  VVGADWGAVAAWHLSLFRPDRVKGLEPGRAERAFARYDYLAVMKKFLLINKTDLLIAPPG 157

Query: 61  ------------LPPSITEEERQVQVYADNFEKSSFT----------------------- 102
                       LP  ITEEE  + VYAD F++S FT                       
Sbjct: 158 MEIIDYLETPSLLPTWITEEE--LGVYADKFQESGFTGGLNYYRAMDLSWELLAPWQGSK 217

BLAST of Lag0013454 vs. NCBI nr
Match: XP_028117656.1 (uncharacterized protein LOC114315269 isoform X2 [Camellia sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-09
Identity = 52/177 (29.38%), Postives = 73/177 (41.24%), Query Frame = 0

Query: 1   MVGIDWEAVSGWHMNLFRPDKQRK---------------------------NPYQLQLPP 60
           +VG DW A++GW+++L RPD+ +                            N   L + P
Sbjct: 103 VVGTDWGAIAGWYLSLLRPDRVKSLFQEAGRAEKAFARYDYVTVMKKLILINKTDLLIAP 162

Query: 61  S-----------------ITEEERQVQVYADNFEKSSFT--------------------- 102
                             ITEEE  ++V+AD F++S FT                     
Sbjct: 163 QGMEIIDYLETPCYCPKWITEEE--LEVFADKFQESGFTGPLNYYRAIDLNWELLAPWQG 222

BLAST of Lag0013454 vs. NCBI nr
Match: TYI01491.1 (hypothetical protein ES332_A11G204600v1 [Gossypium tomentosum])

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-09
Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0

Query: 1   MVGIDWEAVSGWHMNLFRPDKQR-----------KNP--------------------YQ- 60
           +VG DW AV GWH+ LFRP++ +           +NP                    +Q 
Sbjct: 97  IVGHDWGAVIGWHLALFRPERVKGLINLSVPYFSRNPNAKFAESLIRTYGDGFYISQFQE 156

Query: 61  --------LQLPPSITEEERQVQVYADNFEKSSFT------------------------- 90
                    +LPP ITEEE  +QVYAD F++S FT                         
Sbjct: 157 PGRAERTFARLPPWITEEE--LQVYADKFQESGFTGALNYYRVMDLNWELTAPWQGSKIT 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KVI02881.11.3e-1033.52Alpha/beta hydrolase fold-1 [Cynara cardunculus var. scolymus][more]
EOX90965.11.1e-0932.75Alpha/beta-Hydrolases superfamily protein isoform 2 [Theobroma cacao][more]
CAN65368.11.9e-0930.29hypothetical protein VITISV_021974 [Vitis vinifera][more]
XP_028117656.14.3e-0929.38uncharacterized protein LOC114315269 isoform X2 [Camellia sinensis][more]
TYI01491.14.3e-0931.68hypothetical protein ES332_A11G204600v1 [Gossypium tomentosum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR43329:SF107BIFUNCTIONAL EPOXIDE HYDROLASE 2coord: 56..97
NoneNo IPR availablePANTHERPTHR43329EPOXIDE HYDROLASEcoord: 56..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013454.1Lag0013454.1mRNA