Lag0013418 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013418
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 50054823 .. 50056822 (-)
RNA-Seq Expression	Lag0013418
Synteny	Lag0013418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGCGACGCGTCGTACGCGTTTGTGGGCAAACTAAAGCAGAGCATTGCAAATTTGCAATGAGATGAAAATAATATTTTTTATTTTATTTTTCAATTTTTGAAGTCTTCTCAGTTGAAAAATGAAGTCTTCTGCTTTTCAAATAGTTTCAATTTTTTTTTTAATTAGGAATATTTAAAATTATTACACGTCAATAAATGTTCGAATCTGTCCGTAGAGATTAGTTATCAATGTACATAATTCGTACACCTGTCCTGTCACTGTAGAGTTAGATCTGGCTGTTGACTTTTTATGAATGTTCTGTTCTTGCTACTTCAACAATTTTGATGTAATCTGTAAACCTTGAGTGAAAATGGATCAAATAAATTAACAGAAAGAAAATATCAACAAATATTCAGTGAGGATAGAGGGAAAATGGAGTAATAAAAAAGGAGTAACTTGGATATTTTTTTAAGTTGGTGTTTAAATGGTTTTATTATATATATATATATATTTTTAGTTGAACAACATTTGGGTGGGGGTATTCGACTGACCTTTTAGTCGAGACTCCATGCCAATTATCGTTGAGTTGTGCTCACTTTGGTTTAAATGGTTATTGTATTTTAAAAGGTTTAATTGTTAGAGTTTTTAATTCTAATGTGAAGATATATATATATCGGGCTATTTTATTTAACACGTCGTTTAGAGTGATCTCTAATTAACGAGTACATGGAATTTTTTCATTAAGAATGGGTTTATGTTAACTTTTACTGGACTTGGGGTTTAATGAAGATTTTATATAAAGAATGGTATGGTTATAGTCTCCAATATGCTAATTAAATATATTTAAGTTCTATTACTTATATGACAAAGAGAGTTCTAAAGCATGATTCTAGAGTTTATTGATTCGAAAGCATGATTATATTATTGATTCTAATGATTCAATATGCATGATTCTAGAGTTTGTGATTAAAGTATTCCATTCAACCTAAAAATTAAAATTTCAAATTTAGTGGCCATACTTTTATCATATTCATTAGACAACACATAAATTATATATTTACAATGGTATCAAATTGTTTACCTTTGGGCCTAAGTTTGTATGATCTACTTTAATTTCACATAAATGCTTCATACTAACAAAAATGTTGTCATTCTGTACTTTTGTATTCACTTTTCTAATTGATATTTGAGTTTCTTCAAAAGAGAAAAAGAAAAGACTAGACATTTGGTTTGCATTCTCAAATAACATGATTATTTTAGATCAACAATTGCAAGCGGAGAAGCAAACCATCCACCAGTTTAATATGAAAAAATGGAAAATTCAGAGCACAGAAAAAAAAAAAAAATTGTTTTTTGTTTTTTGTTTTTTTTTTTTTTAAAAACCTTGATTATAAATAACAAAATTGCAAATATTATTTGGAAAATGGAAAGGGCTAACGAGGTTCATTTGCGCGCGGTGGTGAGTCGACGTGGAATTCTTTTCTCCTTTCTAATTTTCCAGGAAAAAATTATTTTATTTTTGGGCGTTATTCAGTTTGGAATCCGAACACATGGAATTCAATCCAACTCGATCAGACCGAATAATCTCGATACATATTTTACTGATCAATGAACTGAACTTCAACATCACAAGCAAGCAAACAAAAGAAGTAACCAATTTCGAAGAACGAATGAATCCAAAGAGAATATGAAATTAGGGATTAAAAAACAGAGGATCGCAGAAGACAGCGTCGTCTCAGATCTCACCCGCTTCAACCGTATAATGAGAATCCGAAACCGTCTGTTCGAGCAGTAGCAGCGAGAGAGAACGATAGAGAAAGAGAGTTAAATTTTTCGGGGAAAAACGCGAGAGGAGAACGGCGGCGGAGAACTCCGATCGACGGAACAGAGACAGGAGAACAACTTTTTCAGAACACGGCGGAGGACTTGGCCGCGTTTCGGAATCCAGCGAGGAGCTTCGGCGGCGGAGGTGGCGGCGGCAGCCATTTGGACGGCGGTGGTTTAGTCAGTTGA

mRNA sequence

ATGGAAATGGCGACGCGTCAGGATCGCAGAAGACAGCGTCGTCTCAGATCTCACCCGCTTCAACCGTATAATGAGAATCCGAAACCGTCTGTTCGAGCAGTAGCAGCGAGAGAGAACGATAGAGAAAGAGAGTTAAATTTTTCGGGGAAAAACGCGAGAGGAGAACGGCGGCGGAGAACTCCGATCGACGGAACAGAGACAGGAGAACAACTTTTTCAGAACACGGCGGAGGACTTGGCCGCGTTTCGGAATCCAGCGAGGAGCTTCGGCGGCGGAGGTGGCGGCGGCAGCCATTTGGACGGCGGTGGTTTAGTCAGTTGA

Coding sequence (CDS)

ATGGAAATGGCGACGCGTCAGGATCGCAGAAGACAGCGTCGTCTCAGATCTCACCCGCTTCAACCGTATAATGAGAATCCGAAACCGTCTGTTCGAGCAGTAGCAGCGAGAGAGAACGATAGAGAAAGAGAGTTAAATTTTTCGGGGAAAAACGCGAGAGGAGAACGGCGGCGGAGAACTCCGATCGACGGAACAGAGACAGGAGAACAACTTTTTCAGAACACGGCGGAGGACTTGGCCGCGTTTCGGAATCCAGCGAGGAGCTTCGGCGGCGGAGGTGGCGGCGGCAGCCATTTGGACGGCGGTGGTTTAGTCAGTTGA

Protein sequence

MEMATRQDRRRQRRLRSHPLQPYNENPKPSVRAVAARENDRERELNFSGKNARGERRRRTPIDGTETGEQLFQNTAEDLAAFRNPARSFGGGGGGGSHLDGGGLVS

Homology

[Close]

BLAST of Lag0013418 vs. NCBI nr
Match: KAE8647590.1 (hypothetical protein Csa_023535, partial [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 52/84 (61.90%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 24  NENPKPSVRAVAARENDRERELNFSGKNARGERRRRTPIDGTET-GEQLFQNTAEDLAAF 83
           N   KPSV          E  LN S KNARG+RRRRTPIDGT T  EQLF+NTAEDLA F
Sbjct: 56  NSKLKPSVL-------KSEIVLNISRKNARGDRRRRTPIDGTNTEEEQLFKNTAEDLAPF 115

Query: 84  RNPARSFGGGGGGGSHLDGGGLVS 107
           RNPARS G   GG  HLD GG V+
Sbjct: 116 RNPARSSGNRDGG--HLDDGGFVN 130

[Close]

BLAST of Lag0013418 vs. NCBI nr
Match: KAG6603965.1 (hypothetical protein SDJN03_04574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-06
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 18 HPLQPYNENPKPSVRAVAARENDRERELNFSGKNARGERRRRTPIDGTETGEQ-LFQNTA 77
          +P    +   KPS++ +A+       EL   G+NARG+RRRRTP+DGTET E+ LF+N  
Sbjct: 23 NPTVEISTRTKPSLQTIAS-------ELISLGENARGQRRRRTPLDGTETQEEKLFKNAT 82

Query: 78 EDLAAFRNPARSFGGGGG 95
          ED AAF +PARSF    G
Sbjct: 83 EDFAAFWDPARSFRNDDG 93

The following BLAST results are available for this feature:

BLAST of Lag0013418 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647590.1	2.4e-10	61.90	hypothetical protein Csa_023535, partial [Cucumis sativus]	[more]
KAG6603965.1	4.7e-06	48.72	hypothetical protein SDJN03_04574, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0013418 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013418.1	Lag0013418.1	mRNA