Lag0013303 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013303
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 49204221 .. 49204899 (+)
RNA-Seq ExpressionLag0013303
SyntenyLag0013303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTCATATTCACTTCCATCTTCTAAAGCCTTTTGCACCTGAACTTCCCCTCCCTTCCCCCGCGCCCGTAGCATCCATTCTGCTCAACTGCTATAATTTTAATTTCTCATTCTCGTCCATGTCGTCTGCAGGCCTACAGTAATTGCAGAGTCGCAGCCTGAGCGAGCACTATTCTTCCTTGATACCTGACGGTCTTTTAACTTCAGTCCCTTATATGCAGTACTTCATTCGACTTTAGCCTCTCTAATCTTTTCTGAATAAGAACAAGTCAACAGGTTCAGTCGTAGCTGAGCTTTTGTGGAGTCAGTTCCAGGGACTTTTACACGGGCAACGAGGACTACAATTCAAATGGAGAGACGTCAGGCTGGGAACCTGCAACTTGCTTTTTACATGTCATGGAAGCTACGAGATGCGACATTTACCCTATCAAAACCATACAATTTGATGGCTACGGAAGGGAAGCCGGTGCTCAGACAGAGGCATGTAACAGCCAAGTTCGTCAGGTTCGGTTTATTGCTTTCTCTTTCCGCCTGGAAAATTTAAAAGCATTGAAACACGATTAAAGAAAAAGAAGATCATTAAAATCGTAACATTGCCAGAAATAGAATAGGGTTTGGACATTGGAGGGTTCTGTTCTGTTCATAAGGATGCAGTTTTATCAGTCTGGTCAATAG

mRNA sequence

ATGGTGGTTCATATTCACTTCCATCTTCTAAAGCCTTTTGCACCTGAACTTCCCCTCCCTTCCCCCGCGCCCGTAGCATCCATTCTGCTCAACTGCTATAATTTTAATTTCTCATTCTCGTCCATGTCGTCTGCAGGCCTACATTCCAGGGACTTTTACACGGGCAACGAGGACTACAATTCAAATGGAGAGACGTCAGGCTGGGAACCTGCAACTTGCTTTTTACATGTCATGGAAGCTACGAGATGCGACATTTACCCTATCAAAACCATACAATTTGATGGCTACGGAAGGGAAGCCGGTGCTCAGACAGAGGCATGTAACAGCCAAGTTCGTCAGTTTTATCAGTCTGGTCAATAG

Coding sequence (CDS)

ATGGTGGTTCATATTCACTTCCATCTTCTAAAGCCTTTTGCACCTGAACTTCCCCTCCCTTCCCCCGCGCCCGTAGCATCCATTCTGCTCAACTGCTATAATTTTAATTTCTCATTCTCGTCCATGTCGTCTGCAGGCCTACATTCCAGGGACTTTTACACGGGCAACGAGGACTACAATTCAAATGGAGAGACGTCAGGCTGGGAACCTGCAACTTGCTTTTTACATGTCATGGAAGCTACGAGATGCGACATTTACCCTATCAAAACCATACAATTTGATGGCTACGGAAGGGAAGCCGGTGCTCAGACAGAGGCATGTAACAGCCAAGTTCGTCAGTTTTATCAGTCTGGTCAATAG

Protein sequence

MVVHIHFHLLKPFAPELPLPSPAPVASILLNCYNFNFSFSSMSSAGLHSRDFYTGNEDYNSNGETSGWEPATCFLHVMEATRCDIYPIKTIQFDGYGREAGAQTEACNSQVRQFYQSGQ
Homology
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BLAST of Lag0013303 vs. NCBI nr
Match: KAG6594886.1 (hypothetical protein SDJN03_11439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-19
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 47  LHSRDFYTGNEDYNSNGETSGWEPATCFLHVMEATRCDIYPIKTIQFDGYGREAGAQTEA 106
           +H   FYTGNED NSNGET+GWEPA+CF HVME   C  YPI+TIQF G GREAGAQTEA
Sbjct: 366 VHPGTFYTGNEDNNSNGETAGWEPASCFFHVMEDMTCSTYPIETIQFGGCGREAGAQTEA 425

Query: 107 CNSQVRQ 114
           C  QVRQ
Sbjct: 426 C--QVRQ 430

The following BLAST results are available for this feature:
BLAST of Lag0013303 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594886.17.0e-1973.13hypothetical protein SDJN03_11439, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0013303 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013303.1Lag0013303.1mRNA