Lag0013239 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013239
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHydroxyproline-rich glycoprotein family protein
Locationchr1: 48672781 .. 48673271 (+)
RNA-Seq ExpressionLag0013239
SyntenyLag0013239
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTCCCGATTTCTCCCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGGTTTCCCCTCGGCACGGCTCTGCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCACTGGGACAAACTCAGATCCCTCCGCCGTTCCGCTTCCCAGCCCCTGGATCACGATCACGATCTTCACCTCCGATCCTCTCCATCCAAATCTACCCCTACTTCTCTCGTAATTTCCCTGCTCCTTTCCTTCATGTTTTCTTTCTTTTTTTCCAGTTTTTGATTGTTGAAACGAGGAATTGATTTTTGTTGGAGCAGGATTTGGAGAAGAATCCAAGAGAGAGCTTATCGGTGTTGATGCCTGGAGATTCGGTTCCGAAGTTCATCGCGATGCCGTGCCCTAGGGAGCCGCCGCGGCCGGAGATGATTGAGGTGAAAGTGGAGAAGCCGCCGAAGCCGCCGCGAATTGCGGTTCCTTTCTATTAG

mRNA sequence

ATGGAGAGTCCCGATTTCTCCCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGGTTTCCCCTCGGCACGGCTCTGCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCACTGGGACAAACTCAGATCCCTCCGCCGTTCCGCTTCCCAGCCCCTGGATCACGATCACGATCTTCACCTCCGATCCTCTCCATCCAAATCTACCCCTACTTCTCTCGATTTGGAGAAGAATCCAAGAGAGAGCTTATCGGTGTTGATGCCTGGAGATTCGGTTCCGAAGTTCATCGCGATGCCGTGCCCTAGGGAGCCGCCGCGGCCGGAGATGATTGAGGTGAAAGTGGAGAAGCCGCCGAAGCCGCCGCGAATTGCGGTTCCTTTCTATTAG

Coding sequence (CDS)

ATGGAGAGTCCCGATTTCTCCCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGGTTTCCCCTCGGCACGGCTCTGCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCACTGGGACAAACTCAGATCCCTCCGCCGTTCCGCTTCCCAGCCCCTGGATCACGATCACGATCTTCACCTCCGATCCTCTCCATCCAAATCTACCCCTACTTCTCTCGATTTGGAGAAGAATCCAAGAGAGAGCTTATCGGTGTTGATGCCTGGAGATTCGGTTCCGAAGTTCATCGCGATGCCGTGCCCTAGGGAGCCGCCGCGGCCGGAGATGATTGAGGTGAAAGTGGAGAAGCCGCCGAAGCCGCCGCGAATTGCGGTTCCTTTCTATTAG

Protein sequence

MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDHDHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPPRIAVPFY
Homology
BLAST of Lag0013239 vs. NCBI nr
Match: XP_038881262.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 0

Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDH 60
           MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPL H
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPL-H 60

Query: 61  DHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVE 120
           D DLHLRSSPSKS PTS DLEKN RESLSVLMPGDS+PKFIAMPCPREPPR EMIEVKVE
Sbjct: 61  DDDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSIPKFIAMPCPREPPRAEMIEVKVE 120

Query: 121 KPPKPPRIAVPFY 134
           KPPKP RIAVPFY
Sbjct: 121 KPPKPLRIAVPFY 132

BLAST of Lag0013239 vs. NCBI nr
Match: XP_023518276.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 118/133 (88.72%), Postives = 126/133 (94.74%), Query Frame = 0

Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q L H
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVE 120
           DH L L SSPSKS PT+LDLEKN RESLSV+MPGDS+PKFIAMPCPREPPRPEMI+VKVE
Sbjct: 120 DHHL-LPSSPSKSNPTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVKVE 179

Query: 121 KPPKPPRIAVPFY 134
           KPPKPPRIA+PFY
Sbjct: 180 KPPKPPRIAIPFY 191

BLAST of Lag0013239 vs. NCBI nr
Match: XP_022962719.1 (uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypothetical protein SDJN03_11476, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026886.1 hypothetical protein SDJN02_10893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 3.9e-58
Identity = 117/133 (87.97%), Postives = 124/133 (93.23%), Query Frame = 0

Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q L H
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  DHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVE 120
           DH L L SSPSKS  T+LDLEKN RESLSV+MPGDS+PKFIAMPCPREPPRPEMI VKVE
Sbjct: 61  DHHL-LPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVE 120

Query: 121 KPPKPPRIAVPFY 134
           KPPKPPRIA+PFY
Sbjct: 121 KPPKPPRIAIPFY 132

BLAST of Lag0013239 vs. NCBI nr
Match: XP_022133072.1 (uncharacterized protein At5g65660 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 8.6e-58
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 0

Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDH 60
           MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ   H
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60

Query: 61  DHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVE 120
            H LHL SSPSKS P SLDLE N R+SLSVLMPGDS+PKFIAMPCPREPPRPEMI+VKVE
Sbjct: 61  PH-LHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVE 120

Query: 121 KPPKPPRIAVPFY 134
           KPPKPPRIAVPFY
Sbjct: 121 KPPKPPRIAVPFY 129

BLAST of Lag0013239 vs. NCBI nr
Match: XP_023003846.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57
Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0

Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q L H
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHDLHLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVE 120
           DH L L SSPSKS  T+LDLEKN RESLSV+MPGDS+PKFIAMPCPREPPRPEMI+V VE
Sbjct: 120 DHHL-LPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVE 179

Query: 121 KPPKPPRIAVPFY 134
           KPPKPPRIA+PFY
Sbjct: 180 KPPKPPRIAIPFY 191

BLAST of Lag0013239 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.1e-35
Identity = 79/134 (58.96%), Postives = 94/134 (70.15%), Query Frame = 0

Query: 5   DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLDHDHDL 64
           DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RSLRRS +   +     
Sbjct: 6   DFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLA---NGRPSA 65

Query: 65  HLRSSPSKSTPTSLDLEKNPRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPP- 124
            + S+P K  P   +++K    S+ VLMPGD+ PKFIA+PCP  PPRPE + V V+ PP 
Sbjct: 66  DIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQ 125

Query: 125 ----KPPRIAVPFY 134
               KP R  VP Y
Sbjct: 126 SPPVKPARFPVPLY 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881262.13.7e-6193.98uncharacterized protein At5g65660-like [Benincasa hispida][more]
XP_023518276.12.7e-5988.72uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo][more]
XP_022962719.13.9e-5887.97uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypoth... [more]
XP_022133072.18.6e-5890.23uncharacterized protein At5g65660 [Momordica charantia][more]
XP_023003846.11.9e-5787.22uncharacterized protein At5g65660-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LSK98.1e-3558.96Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..83
NoneNo IPR availablePANTHERPTHR34291:SF11SUBFAMILY NOT NAMEDcoord: 1..133
IPR037699Uncharacterized protein At5g65660-likePANTHERPTHR34291HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013239.1Lag0013239.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane