Lag0013167 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013167
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cyclin-D1-1-like
Location	chr1: 47988459 .. 47990421 (-)
RNA-Seq Expression	Lag0013167
Synteny	Lag0013167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTCGTGATTCAGCACCCTGGGAATCACAAGATCGAGAGGATTTATTGGTCTGTAAGTGCACACCAGATCATGAACTCTAATCCTGGCCACTACGTTGCGCTCGTTGTCACCTCCTCCACTTTGAAGTCCGAAAATGGGACCTCCATGAAGCAGCTCAAGCTCCTCCGCCCCGATGACACGCTTCTCATCGGCCATGTCTATCGTCTCATCACCTTCGAAGGTAATTCATCTTCCCCCATTTCTGCTTAAATATTCAATATTGGTTTCAGCTATTGATTGACGGTAAACTGCCTTTTAGTAAAACTTCTTATAGATTATTACTTTATTTTTATATAAATTATTTAAGAGGTTGAAACTATTATTTGATGGGTGGATGTATAAAAAGAAATAAAAAACAAAAATTATATTTTCAAAGGTAACCTACATATTGAAAAGTTTGCATGCCGCCCACTCTAGATGTTCTTGAACTAAAAAAATAAAAATAAAAATAAAAGAAAGAAACAAGAGATTCAAACCTCTTCCAACTTTTTGGTCATACTTGTACGATTGCATTTCACTAATTTTTCAAAAAATTAGTTTTTTATTTTACTTAGATGGTATGGGTTTTATTTTTCCCTTTTTGGGTTTTGATGTGTATCAAGATAGAATCAACCTTTATTTTGTCTAAAATTGGGAGTTTCTTCCTTTTTTTTTTTTTTTTCAGATGTATTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAGCTGGGGAAGTTGCTGAAGGAGGGAGGAGTTCTTTCGGTTGGGATGAAGATAAAGGATTCGGATTCTGCTTCAAATCCGAATGCAAATTCTAAATCCGAAAATTACATGAAGGTAATCAAATACCCATAAGCCTTAATCATGCTCCAAATCCCATAAAGTGGATCTTTTTTCCTTTTTTTTTTTTCTTTTCAAAAGACCTAAATTCTAGTATGGAAATATTTCAAAAAGAAAAAAAAAAAGTCTAGTTTGGAAAAACAATAAAGAAATAGCATGGGAAGATATCGATTTCTTGAATTTCTTTTTCATGATTGCACTCTGATTAAAATCCAAAACTAAAAGAAAAAACAAAAAGTTGTTTTTTCTGAATAAAGAAGCATCTGAAATTGGTTTTAAATTTAAGGCCACGGATATCAAGGCAAAGGCTTTTTATGGGTCACTTCATGAATCTTGTCAGGAATTTAAGTAGAGCTGTAGAGTGCACAGGTATTCAATTATATATCATCAAGTCAAATATATATTTCCAGACTCAATCCATTTCCTTCTTTTTTTTTTTTTTTTTTTTAATAAATAAAAAAAACTCGTATTTTTATTAGCTTTTGCAAGCGGTGGCTTATGGATTTAGAAAAGGAAAATACAGTTTCCTTAACTTAAAAGCTGAACTAATTATTCAAGGACCAAATCATAATGGGTTTTAGCCTGTATTTTAGAACGTACTCATTTTGAATTTGAGTTCCATTTCCCACTAACTTCAACAACAATTTAAGCATTTAAATTTAAAGAGGGCTCTTTTACAAAAAGAACACTTTCCTTTCCCCCTCTTTTGCTTCTAAAATGTTTTATTTTACTAACATGAGATTTCCTTTGATTATAATCATAAAGTTAAAAGAGATATTTATTTGCTCGCTTTCTTTTTCCCCCTTCGCAAAGTCCAAAAAATATCTTCAGATAAACGTGAACATTCCCACTTTATCATCATTGGAGTCGAATCCAAAAATATTGCTGAAATAATTATTTTAAAAATGGTCAGGCGGAGCAGGAGGCGGGCCGTCGCCAGGAAAGCAGCGACGCCGGCAGCAGCGGCGGCGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTACGGTGGTGGTTCGGGTCAATGGAGGCCAGCCTTACAGAGCATCGCAGAAGTTGGAATTAATTGA

mRNA sequence

ATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTCGTGATTCAGCACCCTGGGAATCACAAGATCGAGAGGATTTATTGGTCTGTAAGTGCACACCAGATCATGAACTCTAATCCTGGCCACTACGTTGCGCTCGTTGTCACCTCCTCCACTTTGAAGTCCGAAAATGGGACCTCCATGAAGCAGCTCAAGCTCCTCCGCCCCGATGACACGCTTCTCATCGGCCATGTCTATCGTCTCATCACCTTCGAAGATGTATTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAGCTGGGGAAGTTGCTGAAGGAGGGAGGAGTTCTTTCGGTTGGGATGAAGATAAAGGATTCGGATTCTGCTTCAAATCCGAATGCAAATTCTAAATCCGAAAATTACATGAAGGCGGAGCAGGAGGCGGGCCGTCGCCAGGAAAGCAGCGACGCCGGCAGCAGCGGCGGCGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTACGGTGGTGGTTCGGGTCAATGGAGGCCAGCCTTACAGAGCATCGCAGAAGTTGGAATTAATTGA

Coding sequence (CDS)

ATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTCGTGATTCAGCACCCTGGGAATCACAAGATCGAGAGGATTTATTGGTCTGTAAGTGCACACCAGATCATGAACTCTAATCCTGGCCACTACGTTGCGCTCGTTGTCACCTCCTCCACTTTGAAGTCCGAAAATGGGACCTCCATGAAGCAGCTCAAGCTCCTCCGCCCCGATGACACGCTTCTCATCGGCCATGTCTATCGTCTCATCACCTTCGAAGATGTATTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAGCTGGGGAAGTTGCTGAAGGAGGGAGGAGTTCTTTCGGTTGGGATGAAGATAAAGGATTCGGATTCTGCTTCAAATCCGAATGCAAATTCTAAATCCGAAAATTACATGAAGGCGGAGCAGGAGGCGGGCCGTCGCCAGGAAAGCAGCGACGCCGGCAGCAGCGGCGGCGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTACGGTGGTGGTTCGGGTCAATGGAGGCCAGCCTTACAGAGCATCGCAGAAGTTGGAATTAATTGA

Protein sequence

MGNCQAAEAATVVIQHPGNHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTSMKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSDSASNPNANSKSENYMKAEQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPALQSIAEVGIN

Homology

[Close]

BLAST of Lag0013167 vs. NCBI nr
Match: XP_023003398.1 (uncharacterized protein LOC111497021 [Cucurbita maxima])

HSP 1 Score: 315.1 bits (806), Expect = 4.1e-82
Identity = 167/188 (88.83%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTS 60
           MGNCQAAEAATVVIQHPG N +IERIYWSVSAHQIMNSNPGHYVALVVTSSTLK++NGT 
Sbjct: 1   MGNCQAAEAATVVIQHPGINPRIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  MKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSDS 120
           +K LKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGG LS+GMK KD+DS
Sbjct: 61  IKHLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKKKDTDS 120

Query: 121 ASNPNANSKSENYMKAEQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPALQ 180
           ASNPN+NSKS+NYMKAEQE GRR E+ DAGSS GGRGGGG RGMGRHYGGG GQWRPALQ
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGG-GQWRPALQ 180

Query: 181 SIAEVGIN 188
           SIAEVGIN
Sbjct: 181 SIAEVGIN 187

[Close]

BLAST of Lag0013167 vs. NCBI nr
Match: XP_022963138.1 (uncharacterized protein LOC111463436 [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 5.4e-82
Identity = 167/188 (88.83%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTS 60
           MGNCQAAEAATVVIQHPG N KIERIYWSVSAHQIMNSNPGHYVALVVTSSTLK++NGT 
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  MKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSDS 120
           +KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGG LS+GMKI D++S
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKINDTNS 120

Query: 121 ASNPNANSKSENYMKAEQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPALQ 180
           ASNPN+NSKS+NYMKAEQE GRR E+ DAGS  GGRGGGG RGMGRHYGGG GQWRPALQ
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSRSGGRGGGGPRGMGRHYGGG-GQWRPALQ 180

Query: 181 SIAEVGIN 188
           SIAEVGIN
Sbjct: 181 SIAEVGIN 187

[Close]

BLAST of Lag0013167 vs. NCBI nr
Match: XP_038883937.1 (uncharacterized protein LOC120074768 [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 4.6e-81
Identity = 167/188 (88.83%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTSM 60
           MGNCQAAEAATVVIQHPGN KIERIYWSVSAH+IMNSNPGHYVAL++TSST K+ENGT +
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTTKTENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSD-S 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGG LSVGMKIK SD S
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDNS 120

Query: 121 ASNPNANSKSENYMKAEQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPALQ 180
           ASNPNANSKS+NYMK EQ+ GR    SDAGSSGGGRGGGGQRGMGRHYGGGS QWRPALQ
Sbjct: 121 ASNPNANSKSQNYMKPEQDGGR----SDAGSSGGGRGGGGQRGMGRHYGGGS-QWRPALQ 180

Query: 181 SIAEVGIN 188
           SIAE+GIN
Sbjct: 181 SIAEIGIN 183

[Close]

BLAST of Lag0013167 vs. NCBI nr
Match: XP_004141857.1 (uncharacterized protein LOC101222947 [Cucumis sativus] >KGN48621.1 hypothetical protein Csa_004276 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 4.6e-81
Identity = 164/187 (87.70%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTSM 60
           MGNCQAAEAATVVIQHPGN KIERIYWSVSAH+IMNSNPGHYVAL++TSST+KSENGT +
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSDSA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGG LSVGMKIK SDS 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSENYMKAEQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPALQS 180
           SNPNANSKS+NYMK EQ+A  R E+S+AGSSGGGR   GQRGMGRHYGGGS QWRPALQS
Sbjct: 121 SNPNANSKSQNYMKPEQDAEHRLENSNAGSSGGGR---GQRGMGRHYGGGS-QWRPALQS 180

Query: 181 IAEVGIN 188
           IAE+GIN
Sbjct: 181 IAEIGIN 183

[Close]

BLAST of Lag0013167 vs. NCBI nr
Match: XP_016899236.1 (PREDICTED: uncharacterized protein LOC103484864 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 2.3e-80
Identity = 166/189 (87.83%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNHKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKSENGTSM 60
           MGNCQAAEAATVVIQHPGN KIERIYWSVSAH+IMNSNPGHYVAL++TSSTLKSENGT +
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTLKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGVLSVGMKIKDSDSA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGG LSVGMKIK SDS 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSENYMKA--EQEAGRRQESSDAGSSGGGRGGGGQRGMGRHYGGGSGQWRPAL 180
           SNPNANSKS+NYMK+  EQ A  R E+SDAGSSGGGR   GQRGMGRHYGGGS QWRPAL
Sbjct: 121 SNPNANSKSQNYMKSQPEQNAEHRLENSDAGSSGGGR---GQRGMGRHYGGGS-QWRPAL 180

Query: 181 QSIAEVGIN 188
           QSIAE+GIN
Sbjct: 181 QSIAEIGIN 185

The following BLAST results are available for this feature:

BLAST of Lag0013167 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003398.1	4.1e-82	88.83	uncharacterized protein LOC111497021 [Cucurbita maxima]	[more]
XP_022963138.1	5.4e-82	88.83	uncharacterized protein LOC111463436 [Cucurbita moschata]	[more]
XP_038883937.1	4.6e-81	88.83	uncharacterized protein LOC120074768 [Benincasa hispida]	[more]
XP_004141857.1	4.6e-81	87.70	uncharacterized protein LOC101222947 [Cucumis sativus] >KGN48621.1 hypothetical ...	[more]
XP_016899236.1	2.3e-80	87.83	PREDICTED: uncharacterized protein LOC103484864 [Cucumis melo]	[more]

BLAST of Lag0013167 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..183 e-value: 9.2E-32 score: 110.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..133
None	No IPR available	PANTHER	PTHR33413:SF1	EXPRESSED PROTEIN	coord: 1..184
None	No IPR available	PANTHER	PTHR33413	EXPRESSED PROTEIN	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013167.1	Lag0013167.1	mRNA