Lag0013163 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013163
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	50S ribosomal protein L7/L12
Location	chr1: 47954241 .. 47954747 (+)
RNA-Seq Expression	Lag0013163
Synteny	Lag0013163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCAATTGCCTCCAAACTCCCAGCCAAATCTCTAGTGAGACTTCTCACTGTCGCTCCGAAACCATCACTTGTTCGCTCACTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGCGGATCGCCGATGAACTCCTTGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCAGGGCTAAGCGCACCAGGTTCGGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCCGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATTAAGGAGGTGAGGACGTTCACTGAGTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTACCTGTAGTGCTGAAGAAGGGAGTAACGAAAGATCAAGGAAATCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

mRNA sequence

ATGCCATCAATTGCCTCCAAACTCCCAGCCAAATCTCTAGTGAGACTTCTCACTGTCGCTCCGAAACCATCACTTGTTCGCTCACTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGCGGATCGCCGATGAACTCCTTGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCAGGGCTAAGCGCACCAGGTTCGGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCCGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATTAAGGAGGTGAGGACGTTCACTGAGTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTACCTGTAGTGCTGAAGAAGGGAGTAACGAAAGATCAAGGAAATCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Coding sequence (CDS)

ATGCCATCAATTGCCTCCAAACTCCCAGCCAAATCTCTAGTGAGACTTCTCACTGTCGCTCCGAAACCATCACTTGTTCGCTCACTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGCGGATCGCCGATGAACTCCTTGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTAAACAAGTACGGGCCTGCAGTTTCAGGGCTAAGCGCACCAGGTTCGGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCCGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATTAAGGAGGTGAGGACGTTCACTGAGTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTACCTGTAGTGCTGAAGAAGGGAGTAACGAAAGATCAAGGAAATCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Protein sequence

MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE

Homology

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BLAST of Lag0013163 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 2.3e-76
Identity = 163/168 (97.02%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAP+P LVRSLSTVS+ERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSKERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of Lag0013163 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLTVAP+P LVRSLSTV+EERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of Lag0013163 vs. NCBI nr
Match: XP_022977261.1 (uncharacterized protein LOC111477630 [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA +P LVRSLSTVSEERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of Lag0013163 vs. NCBI nr
Match: XP_022132437.1 (uncharacterized protein LOC111005295 [Momordica charantia])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAP+P LVRSLSTVS+ER QKLERIADELL L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLNKYGPAVSGLSAPGSA+AGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of Lag0013163 vs. NCBI nr
Match: XP_008440399.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12806.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MPSIASKLPAKSLVRLLTVAPKPSLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+AP+P LVRSLSTV+EERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-16
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 40  LERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I ++L  LT ++  + +     + G++   P     SA G +AA         AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAA-------VAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  TELGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 38  QKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +   G+AA G A+AE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 37  TQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEA 96
           ++K + I D L  L+ +E  +         G++    A   ++APG+    SA+ EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 40  LERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I ++L  LT I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVS--------ASAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ T+LGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot
Match: Q7U3T9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 39  KLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEK 98
           K + I + L  L+ +E  +         G++    A   ++APG+AA G     A+  EK
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAE--EK 63

Query: 99  TVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

The following BLAST results are available for this feature:

BLAST of Lag0013163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882677.1	2.3e-76	97.02	50S ribosomal protein L7/L12 [Benincasa hispida]	[more]
XP_004141864.1	2.0e-75	95.83	uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical ...	[more]
XP_022977261.1	1.7e-74	95.83	uncharacterized protein LOC111477630 [Cucurbita maxima]	[more]
XP_022132437.1	1.7e-74	95.24	uncharacterized protein LOC111005295 [Momordica charantia]	[more]
XP_008440399.1	6.3e-74	94.05	PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosom...	[more]

BLAST of Lag0013163 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41189	8.2e-16	42.19	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
A6LKB9	1.2e-14	44.03	50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI...	[more]
A9BDG4	2.6e-14	37.88	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]
Q9L5W4	3.4e-14	40.63	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494...	[more]
Q7U3T9	7.7e-14	37.69	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rp...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 101..167 e-value: 1.3E-20 score: 73.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 93..167 e-value: 1.6E-20 score: 75.0
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 97..167
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 3..168
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 39..167 e-value: 1.03274E-30 score: 106.086
None	No IPR available	PANTHER	PTHR45987:SF11	50S RIBOSOMAL PROTEIN L7/L12	coord: 3..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013163.1	Lag0013163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome