Lag0013121 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAACATATTATCTATCCTTATTCAAACTGCCGGGAAAGGTTGCAAAAACTCTTGATAAGTTGTTTCGTGATTTCTTTTGGGAGGGATCTAGAAGTGATGGTGGTATGCACAATATTAACTGGGCAACAGTACAACTTCCACATTTGATGGGGGGTATTGGTATTGGTAACTTTCAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATTTGGAGATTTTTACACGAGGAAAATTCTCTATGGTATAGGCTGATTGTAGCTAAATATTATAACTCTGAGTTGCCTAGTCTTTGGCCTAGCATTATTCAAAAAAGTTCTCACAAATCTCCTTGGCGATTCATTACGTCTACTATTGACCTTGTATCTTCACGTGTTAAAAGAAGGTTGGGTAATGGTCTTGATACTTCTTTCTGGCATGATTCATGGTTAAGTTGTGGTATTCTGGCTACAAATTTTCCTCGCCTTTATCGTTTAACAGATCGTCCGAGGAGTTTGGTTGGTGAAACATGGATTGCTTCTCAAACAACATGGGATCCGAGTCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGCTTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACTGTACTGATTCCTGGATTTGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGACTTAGTAGACTATCCGAATATGGCAAATGATCTATATAAGGTCATTTGGACAGATTTTTATCCAAAGAAGATCAAGATTTTTTTATGGGAGCTTAGTCATGGTGCTATTAATACTGCTGATCGACTTCAACGACGAATGCCTCATTTTCATTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGTTCAGAACATTCTAGGCATCTATTTGTTCACTGTACCTTCGCATCCAGATATTGGTCAGAGATTCTAGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAAAGATGTTCTTACTCTCATTTTTGTGGATCATCCATTTCGTGGAGAAAAGAAGATCTTGTGGCTTGCTTTGAACAGAGTTTTCTTCTGGTTTTTATGGGGCGAACGAAATTCTCGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTTATGGATTTAATTCTCTTTCAGGCTTTGTATTGGTGTAAACGTAAACACCCTTTCTCTTATTATAGTTTATCCTTTTTGATTTCCAATTGGAAAGCTTTTATGTAATTCACCCTTTGGTGACCGGAGTTTTTCTCCTCATTTCATTCATCAATGAAATTCGTTTCTCTTCTCAAAAAAATCTTTTGGTGTGCACAAGCTTCTGTCCCCTAAACTTAGCTTTGTTTGAAGGATGAAGGATCCAAGTCTAGAGCTCAAATCTCCCTCCCCAAATGTTACACACTCACCAAGAGATCCTAACATGCATGTTCCTCCTGTCTTTAGTATTAAAAAAAAAAAGTTTCTTCTGTTTTGCTTTAATAACATTAGAGATAAAAACAAAACAGAACAAAACACTGGAGATAGAAAACAGGAAAGACGGACCTCGAACTTGAGAAAACTTTTAGCTTCATATCAGGAAAGCTTCGTGCAAATGATCTTCCTTGATGCACAGTGCACACTAATAAAAGGCTACTACCTGCAAACTAAACCACAGTGTTACAGTCTAACCTATCAGAGTTCAACTCTCCTTGATGTTAATGCAACTCTTGCTCCATTGTCACAAAATGGAAATCTCAAATGCCCTGTATATTTCGGTAAACTAAACAATAGCAGCATAGAGTTTCAGTCCTTCCAGAAACTTCTTTAAGGCCACCTCATAAGGTGAAACTGCTTTCTTGGATGCCATGAATAGTGAAAAGCTTTTATCAATGGTCAATATGATCCATTAAGAGTCTACTAATGCATTACTTCATTTTTTTAAAAATTAAGGCCACCTTCCACGTTTTAGAAATATTGTTTCACAGTAGCAATTACAAAGAAGTTAAATCTTGAATACACCAAATAAAAAATGCTAGCCAAGACAGAACCAATAAACCAAACTACCTTAAGATGGAGGCTTAAAGAACTACTTGATGGTATAAACTCATTAAAAAAATATTGAAGTTCGATAATTAAAAAAAAAAAAAAACTCTGTGTTTTTTTCTTTTGGCTCCGACCATCAACCTAAGTTCTCTTTATGTTCCTCTCAATTCCCTCATCTTGAATGATGCCTGCCTATCTATAGATGATTTGGACATTTTCTCATTGCGTTAGGCTGGCGGTGGCTGGTTTACTTATTGAATTCAGCCCTGTGGTGGAATGCTTGAAGTGCTCTTTATTGGATACAGGAGTTTTTAGATTTTTTGGCCGAATTCATTTCTGTAGCCTCCAATGA ATGCCAACATATTATCTATCCTTATTCAAACTGCCGGGAAAGGTTGCAAAAACTCTTGATAAGTTGTTTCGTGATTTCTTTTGGGAGGGATCTAGAAGTGATGGTGGTATGCACAATATTAACTGGGCAACAGTACAACTTCCACATTTGATGGGGGGTATTGGTATTGGTAACTTTCAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATTTGGAGATTTTTACACGAGGAAAATTCTCTATGGTATAGGCTGATTGTAGCTAAATATTATAACTCTGAGTTGCCTAGTCTTTGGCCTAGCATTATTCAAAAAAGTTCTCACAAATCTCCTTGGCGATTCATTACGTCTACTATTGACCTTGTATCTTCACGTGTTAAAAGAAGGTTGGGTAATGGTCTTGATACTTCTTTCTGGCATGATTCATGGTTAAGTTGTGGTATTCTGGCTACAAATTTTCCTCGCCTTTATCGTTTAACAGATCGTCCGAGGAGTTTGGTTGGTGAAACATGGATTGCTTCTCAAACAACATGGGATCCGAGTCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGCTTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACTGTACTGATTCCTGGATTTGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGACTTAGTAGACTATCCGAATATGGCAAATGATCTATATAAGGTCATTTGGACAGATTTTTATCCAAAGAAGATCAAGATTTTTTTATGGGAGCTTAGTCATGGTGCTATTAATACTGCTGATCGACTTCAACGACGAATGCCTCATTTTCATTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGTTCAGAACATTCTAGGCATCTATTTGTTCACTGTACCTTCGCATCCAGATATTGGTCAGAGATTCTAGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAAAGATGTTCTTACTCTCATTTTTGTGGATCATCCATTTCGTGGAGAAAAGAAGATCTTGTGGCTTGCTTTGAACAGAGTTTTCTTCTGGCTGGCGGTGGCTGGTTTACTTATTGAATTCAGCCCTGTGGTGGAATGCTTGAAGTGCTCTTTATTGGATACAGGAGTTTTTAGATTTTTTGGCCGAATTCATTTCTGTAGCCTCCAATGA ATGCCAACATATTATCTATCCTTATTCAAACTGCCGGGAAAGGTTGCAAAAACTCTTGATAAGTTGTTTCGTGATTTCTTTTGGGAGGGATCTAGAAGTGATGGTGGTATGCACAATATTAACTGGGCAACAGTACAACTTCCACATTTGATGGGGGGTATTGGTATTGGTAACTTTCAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATTTGGAGATTTTTACACGAGGAAAATTCTCTATGGTATAGGCTGATTGTAGCTAAATATTATAACTCTGAGTTGCCTAGTCTTTGGCCTAGCATTATTCAAAAAAGTTCTCACAAATCTCCTTGGCGATTCATTACGTCTACTATTGACCTTGTATCTTCACGTGTTAAAAGAAGGTTGGGTAATGGTCTTGATACTTCTTTCTGGCATGATTCATGGTTAAGTTGTGGTATTCTGGCTACAAATTTTCCTCGCCTTTATCGTTTAACAGATCGTCCGAGGAGTTTGGTTGGTGAAACATGGATTGCTTCTCAAACAACATGGGATCCGAGTCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGCTTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACTGTACTGATTCCTGGATTTGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGACTTAGTAGACTATCCGAATATGGCAAATGATCTATATAAGGTCATTTGGACAGATTTTTATCCAAAGAAGATCAAGATTTTTTTATGGGAGCTTAGTCATGGTGCTATTAATACTGCTGATCGACTTCAACGACGAATGCCTCATTTTCATTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGTTCAGAACATTCTAGGCATCTATTTGTTCACTGTACCTTCGCATCCAGATATTGGTCAGAGATTCTAGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAAAGATGTTCTTACTCTCATTTTTGTGGATCATCCATTTCGTGGAGAAAAGAAGATCTTGTGGCTTGCTTTGAACAGAGTTTTCTTCTGGCTGGCGGTGGCTGGTTTACTTATTGAATTCAGCCCTGTGGTGGAATGCTTGAAGTGCTCTTTATTGGATACAGGAGTTTTTAGATTTTTTGGCCGAATTCATTTCTGTAGCCTCCAATGA MPTYYLSLFKLPGKVAKTLDKLFRDFFWEGSRSDGGMHNINWATVQLPHLMGGIGIGNFQNRNLALLAKWIWRFLHEENSLWYRLIVAKYYNSELPSLWPSIIQKSSHKSPWRFITSTIDLVSSRVKRRLGNGLDTSFWHDSWLSCGILATNFPRLYRLTDRPRSLVGETWIASQTTWDPSLRRNLNDVETEEWMALSLILSSISLQNCTDSWIWPLESSNIFSVKSLMEDLVDYPNMANDLYKVIWTDFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSRHLFVHCTFASRYWSEILDAFGWSTVFPNCIKDVLTLIFVDHPFRGEKKILWLALNRVFFWLAVAGLLIEFSPVVECLKCSLLDTGVFRFFGRIHFCSLQ Homology
BLAST of Lag0013121 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 248.4 bits (633), Expect = 1.0e-61 Identity = 123/362 (33.98%), Postives = 193/362 (53.31%), Query Frame = 0
BLAST of Lag0013121 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 248.1 bits (632), Expect = 1.3e-61 Identity = 122/335 (36.42%), Postives = 185/335 (55.22%), Query Frame = 0
BLAST of Lag0013121 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 246.9 bits (629), Expect = 2.9e-61 Identity = 122/335 (36.42%), Postives = 184/335 (54.93%), Query Frame = 0
BLAST of Lag0013121 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis]) HSP 1 Score: 238.8 bits (608), Expect = 8.0e-59 Identity = 135/366 (36.89%), Postives = 190/366 (51.91%), Query Frame = 0
BLAST of Lag0013121 vs. NCBI nr
Match: TQD93576.1 (hypothetical protein C1H46_020784 [Malus baccata]) HSP 1 Score: 233.4 bits (594), Expect = 3.3e-57 Identity = 130/364 (35.71%), Postives = 188/364 (51.65%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.5e-28 Identity = 99/323 (30.65%), Postives = 143/323 (44.27%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 4.6e-09 Identity = 40/148 (27.03%), Postives = 72/148 (48.65%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 4.9e-62 Identity = 123/362 (33.98%), Postives = 193/362 (53.31%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 6.4e-62 Identity = 122/335 (36.42%), Postives = 185/335 (55.22%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61 Identity = 122/335 (36.42%), Postives = 184/335 (54.93%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 3.9e-59 Identity = 135/366 (36.89%), Postives = 190/366 (51.91%), Query Frame = 0
BLAST of Lag0013121 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58 Identity = 126/344 (36.63%), Postives = 183/344 (53.20%), Query Frame = 0
BLAST of Lag0013121 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 112.1 bits (279), Expect = 1.0e-24 Identity = 93/330 (28.18%), Postives = 136/330 (41.21%), Query Frame = 0
BLAST of Lag0013121 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 63.9 bits (154), Expect = 3.3e-10 Identity = 40/148 (27.03%), Postives = 72/148 (48.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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