Lag0013116 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013116
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGibberellin regulated protein
Locationchr1: 47584326 .. 47584728 (-)
RNA-Seq ExpressionLag0013116
SyntenyLag0013116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTGCTTCAGTCAGTTTGGTTGTTGTTTCATTGATTCTGAGCTCCTTCCTCCTCCAATATGCCATTGCTGATTCCTCTACAACCTATGCTCCAAGTAAGATAAATGCTTTACCATTAATATCAAAACTATTTGCAATGAATATACAACCAAGAGACTAACTGGTTTATTGTTTTTCCCTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGGAAGGTGTTTGTGATTCAAAATGTGGGGTAAGATGTTTGAATGCAGGGGTGAAGGACAGGTGCTTGAAGTATTGTGGACTCTGCTGCCAACAGTGCAATTGTGTGCCCTCTGGAACCTATGGAAATAAGTCGGAATGCCCTTGTTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA

mRNA sequence

ATGGAATCTGCTTCAGTCAGTTTGGTTGTTGTTTCATTGATTCTGAGCTCCTTCCTCCTCCAATATGCCATTGCTGATTCCTCTACAACCTATGCTCCAAGGGTGAAGGACAGGTGCTTGAAGTATTGTGGACTCTGCTGCCAACAGTGCAATTGTGTGCCCTCTGGAACCTATGGAAATAAGTCGGAATGCCCTTGTTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA

Coding sequence (CDS)

ATGGAATCTGCTTCAGTCAGTTTGGTTGTTGTTTCATTGATTCTGAGCTCCTTCCTCCTCCAATATGCCATTGCTGATTCCTCTACAACCTATGCTCCAAGGGTGAAGGACAGGTGCTTGAAGTATTGTGGACTCTGCTGCCAACAGTGCAATTGTGTGCCCTCTGGAACCTATGGAAATAAGTCGGAATGCCCTTGTTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA

Protein sequence

MESASVSLVVVSLILSSFLLQYAIADSSTTYAPRVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Homology
BLAST of Lag0013116 vs. NCBI nr
Match: KAG6595002.1 (Snakin-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 8.9e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPRVKDRCLKYCGLCCQQCNCVPSGTYGN 60
          M+S S+SLV+VSL+LSSFLLQ+AIADSS TYAPRVKDRCLKYCGLCCQQC CVPSGTYGN
Sbjct: 1  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPRVKDRCLKYCGLCCQQCKCVPSGTYGN 60

Query: 61 KSECPCYRDKLNSKGKSKCP 81
          KSECPCYRDKLNSKGKSKCP
Sbjct: 61 KSECPCYRDKLNSKGKSKCP 80

BLAST of Lag0013116 vs. NCBI nr
Match: KAE8647513.1 (hypothetical protein Csa_002853 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 72/80 (90.00%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPRVKDRCLKYCGLCCQQCNCVPSGTYGN 60
          M+S SV+LV++SLILSSF LQYA ADSSTTYAPRVKDRCLKYCGLCCQQC CVPSGTYGN
Sbjct: 1  MKSVSVTLVLLSLILSSFFLQYATADSSTTYAPRVKDRCLKYCGLCCQQCKCVPSGTYGN 60

Query: 61 KSECPCYRDKLNSKGKSKCP 81
          KSECPCYRDKLNSKGKSKCP
Sbjct: 61 KSECPCYRDKLNSKGKSKCP 80

BLAST of Lag0013116 vs. NCBI nr
Match: TYK12845.1 (peamaclein-like [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPRVKDRCLKYCGLCCQQCNCVPSGTYGN 60
          M+S SV+LV++S ILSSF LQY  ADSSTTYAPRVKDRCLKYCGLCCQQC CVPSGTYGN
Sbjct: 1  MKSLSVTLVLLSFILSSFFLQYGTADSSTTYAPRVKDRCLKYCGLCCQQCKCVPSGTYGN 60

Query: 61 KSECPCYRDKLNSKGKSKCP 81
          KSECPCYRDKLNSKGKSKCP
Sbjct: 61 KSECPCYRDKLNSKGKSKCP 80

BLAST of Lag0013116 vs. NCBI nr
Match: XP_038880848.1 (peamaclein-like [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/94 (78.72%), Postives = 78/94 (82.98%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPR--------------VKDRCLKYCGLC 60
          M+SASV LV++SLILSSFLLQYAIADSSTTYAP               VKDRCLKYCG+C
Sbjct: 1  MKSASVILVLLSLILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGIC 60

Query: 61 CQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP 81
          CQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Sbjct: 61 CQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP 94

BLAST of Lag0013116 vs. NCBI nr
Match: XP_031742787.1 (peamaclein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.7e-30
Identity = 71/95 (74.74%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPR---------------VKDRCLKYCGL 60
          M+S SV+LV++SLILSSF LQYA ADSSTTYAP+               VKDRCLKYCGL
Sbjct: 1  MKSVSVTLVLLSLILSSFFLQYATADSSTTYAPKGVCDSKCGVRCLNAGVKDRCLKYCGL 60

Query: 61 CCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP 81
          CCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Sbjct: 61 CCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP 95

BLAST of Lag0013116 vs. ExPASy Swiss-Prot
Match: Q948Z4 (Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 6  VSLVVVSLILSSFLLQYAIADSS--------TTYAPRVKDRCLKYCGLCCQQCNCVPSGT 65
          ++L++V+L+++  L+Q  +A SS              + DRCLKYCG+CC++C CVPSGT
Sbjct: 6  LTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGT 65

Query: 66 YGNKSECPCYRDKLNSKGKSKCP 81
          YGNK ECPCYRDK NSKGKSKCP
Sbjct: 66 YGNKHECPCYRDKKNSKGKSKCP 88

BLAST of Lag0013116 vs. ExPASy Swiss-Prot
Match: Q8LFM2 (Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSS---------TTYAPRVKDRCLKYCGLCCQQCN 60
          M+  +V ++++SL+++S L   + ADSS          + A R +DRCLKYC +CC++CN
Sbjct: 1  MKFPAVKVLIISLLITSSLFILSTADSSPCGGKCNVRCSKAGR-QDRCLKYCNICCEKCN 60

Query: 61 -CVPSGTYGNKSECPCYRDKLNSKGKSKCP 81
           CVPSGTYGNK ECPCYRD  NSKG SKCP
Sbjct: 61 YCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

BLAST of Lag0013116 vs. ExPASy Swiss-Prot
Match: O82328 (Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 35  VKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP 81
           +KDRCLKYCG+CC+ C CVPSGTYGNK EC CYRDKL+SKG  KCP
Sbjct: 63  MKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

BLAST of Lag0013116 vs. ExPASy Swiss-Prot
Match: O80641 (Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-17
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MESASVSLVVVSLILSSFLLQYAIADSSTTYAPRVK-------DRCLKYCGLCCQQCNCV 60
          M+   V   ++SL+L+S     + ADSS      V+       + CLKYC +CCQ+CNCV
Sbjct: 1  MKLVVVQFFIISLLLTSSFSVLSSADSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCV 60

Query: 61 PSGTYGNKSECPCYRDKLNSKGKSKCP 81
          PSGT+G+K ECPCYRD  NSKG SKCP
Sbjct: 61 PSGTFGHKDECPCYRDMKNSKGGSKCP 87

BLAST of Lag0013116 vs. ExPASy Swiss-Prot
Match: P86888 (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-17
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 36 KDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP 81
          ++RCLKYCG+CC++C+CVPSGTYGNK ECPCYRD  NSKG  KCP
Sbjct: 19 QERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595002.18.9e-3490.00Snakin-1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAE8647513.11.2e-3390.00hypothetical protein Csa_002853 [Cucumis sativus][more]
TYK12845.11.3e-3287.50peamaclein-like [Cucumis melo var. makuwa][more]
XP_038880848.11.1e-3178.72peamaclein-like [Benincasa hispida][more]
XP_031742787.12.7e-3074.74peamaclein-like isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q948Z44.4e-2055.42Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1[more]
Q8LFM23.2e-1853.33Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 ... [more]
O823281.2e-1778.26Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV... [more]
O806413.5e-1750.57Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=... [more]
P868883.5e-1775.56Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003854Gibberellin regulated proteinPFAMPF02704GASAcoord: 35..80
e-value: 2.1E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR23201:SF54SUBFAMILY NOT NAMEDcoord: 7..80
NoneNo IPR availablePANTHERPTHR23201EXTENSIN, PROLINE-RICH PROTEINcoord: 7..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013116.1Lag0013116.1mRNA