Lag0013011 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013011
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Locationchr1: 46596912 .. 46597519 (-)
RNA-Seq ExpressionLag0013011
SyntenyLag0013011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGGTAATTAACAACTCGAATTCCTCATGTATATTTCTTTTTTTTTAGTATCAATTTTAGAGTTTGAAACGTTCTTCTTTGGTTGTTTCTAGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG

mRNA sequence

ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG

Coding sequence (CDS)

ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG

Protein sequence

MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRILNT
Homology
BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132593.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-41
Identity = 92/141 (65.25%), Postives = 105/141 (74.47%), Query Frame = 0

Query: 4   PLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLT 63
           PL SNI+L+PP FF I+LQ NL+HKKLMIP+ FV +YGKFLS S+ L+L DG EWK+GLT
Sbjct: 8   PLCSNIILNPPQFFKIVLQRNLEHKKLMIPKKFVTDYGKFLSTSVRLRLLDGMEWKIGLT 67

Query: 64  RAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIE--- 123
            A NGAVWLQNGW  FAEHYSLEFGS LVFRFDG S+FHT IF   GSEIKY        
Sbjct: 68  TAANGAVWLQNGWHPFAEHYSLEFGSLLVFRFDGCSTFHTTIFDITGSEIKYRCNFNDSS 127

Query: 124 -DFEESNDVFSQPKEEEKASF 141
            DFEE +D  +  K+ EK SF
Sbjct: 128 GDFEEEDDA-NYSKQREKPSF 147

BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132589.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 9.8e-38
Identity = 94/169 (55.62%), Postives = 113/169 (66.86%), Query Frame = 0

Query: 14  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQ 73
           PHFF I++Q NL+ ++LMIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQ
Sbjct: 6   PHFFKIVMQRNLEDQRLMIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQ 65

Query: 74  NGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF----------- 133
           NGW  FAEHY L+ GS LV R D NS+F T+IF  +GSEI+Y  K  DF           
Sbjct: 66  NGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEESDDD 125

Query: 134 -EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI 170
            +ES ++F Q  K+ EK S  +S Q RKKMR E   F P M P+EG  I
Sbjct: 126 SDESFEIFHQHSKKREKPSLPSS-QSRKKMRSEG-SFSPKMVPQEGRHI 172

BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132700.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-36
Identity = 91/165 (55.15%), Postives = 112/165 (67.88%), Query Frame = 0

Query: 13  PPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWL 72
           PPHFF ++LQ +++ K+LMIP+ FV +YGKFLS+SI LKLPDG EWKVGL  A NG+VWL
Sbjct: 7   PPHFFKMVLQKSIEDKQLMIPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWL 66

Query: 73  QNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF---------- 132
           +NGW  FAEHY LE GS LV R DG S+FHT+IF   GSEI+Y   ++DF          
Sbjct: 67  RNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEYSFDLKDFGGDFQEESDD 126

Query: 133 --EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPE 165
             +ES + F Q  K+ EK SF +S Q  KKMR E   F P MEP+
Sbjct: 127 DSDESLESFPQHSKKREKPSFPSS-QSPKKMRNEG-SFSPKMEPK 169

BLAST of Lag0013011 vs. NCBI nr
Match: XP_031743781.1 (B3 domain-containing transcription factor VRN1-like [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-34
Identity = 79/138 (57.25%), Postives = 95/138 (68.84%), Query Frame = 0

Query: 1   MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKV 60
           MASP S   VLH PHFF IIL   L+ +KLMIP+ F+ +YGKFLSN I LK PDG EWKV
Sbjct: 1   MASPRSKAKVLHHPHFFKIILHATLEDQKLMIPKKFITDYGKFLSNPICLKTPDGLEWKV 60

Query: 61  GLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIE 120
             T   NG VWLQNGW +F+ HY L+ GS LVFR DGNS+FHT+IF+ N SEI+Y     
Sbjct: 61  ESTTTPNGTVWLQNGWQEFSNHYGLKSGSLLVFRLDGNSTFHTLIFNQNCSEIQYSSNYI 120

Query: 121 DFEESN--DVFSQPKEEE 137
              ESN  +  ++P+ EE
Sbjct: 121 GHVESNQEEYTTRPQTEE 138

BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132590.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia] >XP_022132592.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-31
Identity = 85/152 (55.92%), Postives = 99/152 (65.13%), Query Frame = 0

Query: 31  MIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSF 90
           MIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQNGW  FAEHY L+ GS 
Sbjct: 1   MIPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSM 60

Query: 91  LVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF------------EESNDVFSQ-PKEEEK 150
           LV R D NS+F T+IF  +GSEI+Y  K  DF            +ES ++F Q  K+ EK
Sbjct: 61  LVLRLDENSTFQTLIFEPSGSEIEYSFKFNDFGGDFQEESDDDSDESFEIFHQHSKKREK 120

Query: 151 ASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI 170
            S  +S Q RKKMR E   F P M P+EG  I
Sbjct: 121 PSLPSS-QSRKKMRSEG-SFSPKMVPQEGRHI 150

BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-20
Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 0

Query: 14  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQ 73
           P F  +I    +Q K+L +P+ FV ++   LS +++L +PDG  W+VGL +A+N  +W Q
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADN-KIWFQ 63

Query: 74  NGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY 116
           +GW +F + YS+  G  L+FR++GNS+F   IF+ + SEI Y
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104

BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 16  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNG 75
           FF ++L   ++ K + IP  FV   G  LS  ++L+ P G +  + L R     +W   G
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRI-GEEIWFHEG 89

Query: 76  WDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY 116
           W +FAE +S+E G FL+F +  NSSF  +IF+ +  E KY
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKY 128

BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-11
Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 16  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNG 75
           F  IIL   +  K + +P  FV  +G  L+++++L+ P G +  + + R     VW + G
Sbjct: 34  FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRI-GDEVWFEKG 93

Query: 76  WDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDFEESNDVFSQPKEE 135
           W +FAE +SL  G FL F ++G+S F  +IF  + SEI+Y   ++D +++ +      E+
Sbjct: 94  WSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEY--PLDDTDDNREEVMDDDEQ 153

Query: 136 EKASFTTSLQIRKKMRKEELL 157
               F +S    + +  +ELL
Sbjct: 154 GFTGFESSDDDGEVVDMDELL 170

BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 47/156 (30.13%), Postives = 77/156 (49.36%), Query Frame = 0

Query: 16  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNG 75
           FF ++L   ++ K + IP  FV   G  LS  ++L  P G +  + L R     +W   G
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRI-GEEIWFHEG 89

Query: 76  WDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY-FRKIEDFEESNDVFSQPKE 135
           W +FAE +S+E G FL+F +  NSSF  +IF+ +  E  Y    +   +  +DV     +
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAVHIIDSDDDVIEITGK 149

Query: 136 EEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRIL 171
           E    F T  + + K R  ++ F  I+   + M++L
Sbjct: 150 E----FDT--EHKSKKRPRDIEFDKILHDVDVMQVL 178

BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q10GM4 (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622100 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10
Identity = 26/85 (30.59%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 28  KKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEF 87
           + +++P  F   +   +S  ++LK P GK W +G+  ++ G + L++GW +F +   ++ 
Sbjct: 42  ESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQE 101

Query: 88  GSFLVFRFDGNSSFHTMIFHTNGSE 113
              L+FR+ G SSF  +IF  +G E
Sbjct: 102 NDCLLFRYSGVSSFDVLIFDPSGCE 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132593.11.9e-4165.25B3 domain-containing transcription factor VRN1-like [Momordica charantia][more]
XP_022132589.19.8e-3855.62B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charan... [more]
XP_022132700.14.1e-3655.15B3 domain-containing transcription factor VRN1-like [Momordica charantia][more]
XP_031743781.15.0e-3457.25B3 domain-containing transcription factor VRN1-like [Cucumis sativus][more]
XP_022132590.11.4e-3155.92B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charan... [more]
Match NameE-valueIdentityDescription
Q8L3W17.3e-2041.18B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q84R273.3e-1237.00B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18... [more]
Q9XIB48.1e-1130.50B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49... [more]
Q9ZSH71.1e-1030.13B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01... [more]
Q10GM46.9e-1030.59B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=399... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 16..109
e-value: 4.1E-16
score: 69.5
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 24..106
e-value: 3.4E-14
score: 52.5
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 15..109
score: 14.649287
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 14..106
e-value: 5.06621E-17
score: 70.4345
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 10..110
e-value: 2.4E-24
score: 87.2
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 13..109
NoneNo IPR availablePANTHERPTHR31920:SF26TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATEDcoord: 11..153
NoneNo IPR availablePANTHERPTHR31920B3 DOMAIN-CONTAININGcoord: 11..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013011.1Lag0013011.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding