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Lag0013011 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGGTAATTAACAACTCGAATTCCTCATGTATATTTCTTTTTTTTTAGTATCAATTTTAGAGTTTGAAACGTTCTTCTTTGGTTGTTTCTAGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGTCGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAAATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGATCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCGTAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRILNT Homology
BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132593.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia]) HSP 1 Score: 179.9 bits (455), Expect = 1.9e-41 Identity = 92/141 (65.25%), Postives = 105/141 (74.47%), Query Frame = 0
BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132589.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia]) HSP 1 Score: 167.5 bits (423), Expect = 9.8e-38 Identity = 94/169 (55.62%), Postives = 113/169 (66.86%), Query Frame = 0
BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132700.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia]) HSP 1 Score: 162.2 bits (409), Expect = 4.1e-36 Identity = 91/165 (55.15%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of Lag0013011 vs. NCBI nr
Match: XP_031743781.1 (B3 domain-containing transcription factor VRN1-like [Cucumis sativus]) HSP 1 Score: 155.2 bits (391), Expect = 5.0e-34 Identity = 79/138 (57.25%), Postives = 95/138 (68.84%), Query Frame = 0
BLAST of Lag0013011 vs. NCBI nr
Match: XP_022132590.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia] >XP_022132592.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia]) HSP 1 Score: 147.1 bits (370), Expect = 1.4e-31 Identity = 85/152 (55.92%), Postives = 99/152 (65.13%), Query Frame = 0
BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 7.3e-20 Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 0
BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12 Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0
BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2) HSP 1 Score: 68.6 bits (166), Expect = 8.1e-11 Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 0
BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10 Identity = 47/156 (30.13%), Postives = 77/156 (49.36%), Query Frame = 0
BLAST of Lag0013011 vs. ExPASy Swiss-Prot
Match: Q10GM4 (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622100 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10 Identity = 26/85 (30.59%), Postives = 49/85 (57.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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