Lag0012957 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012957
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Location	chr1: 46109798 .. 46111387 (+)
RNA-Seq Expression	Lag0012957
Synteny	Lag0012957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCGGAAGGAGGTCGTTTTTCTCTCTGTTTTGCTTTGCTGCTTCTGTGATTGTATTTTTTCTTGTTTCTTGCTCTGTTTCTGTTGATGTTAGTTTCCGTAGAGAATCCTAGGGTTTCGTTTTGTTCTTTGCGTTCTTTGCTTGTGAAAGAGAGGAAATGCGTAAGTTTCTTGATCTGAGTTGAATAGTTCGGCGCGACTCTTGAGGAGCTCAGATTGTTGTTTCTTTGGTGTTCAACCTCGCCTAATGAAAACAATCATAGAAGCACCAGAATCTCGTAATTATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTGGTCAAACTGTGAATTGAGTTTGAAATGTTGCTCTGTTGTTTGTTTCTTTTGAGCGTAATCATCGCTGTTTTCGTGGCATTTCATTCATCTTGCACATGCATATGTATTTTTATTTTCCTGTTTGGATTTGAGATTTGATTCTTCTTTTTCCTTATATTTCCGCCGTTTTTCGGTCGGAATTTCTCACATTGCTCTTAAAATTCAGAAACGTAATTTGATTAGTTCGATGGCTTGGATCGATTTGGAAGTCTGTGTTTTGTCACGGGAGAAATTGGCGATGTGCTTTTTGCTTTTTAACCGTTTATGATTAATTCACGGAGGCAATCAAGTCACTTTTTCTAAGCTGGGAAGCAGTCAAACCTGTCAACTTTTTCTTCCATCCTCTCGGCAATTATTTTCCTATGGTTCCCAAACTTCAACGCTTTAGGCGATGAGTTTTCTTCAGCTGTTCTTCTATTTCAACTATTGACTTTTTATTTGTTTATTTATATTTTAACATGTTTTGGAGACTGGAAAATAAAATTTTAGAAAAGTTGCTGTCACTGACTTTGAAATGGAAAAACTTATCCAATTATTATACTCCACAGATAACTAATCGAACTTTAATTTGATTTATAAAAAAAAAAAAAAAAAAAAGGAGAAGGAATTTTGTTGGCTCTAATAAGATAGTAAATTGGAAACAGAGAAAAGATAAATCTAAAATGGTCGGTTACCGATACGCTGTGCATGTTATTTTCCTAATTCTAATGAGAAGCAAGTAATGAATTAGACAATGAGAGGTTACTGTGCAAATCCCTGATGTGGTGTGTGTTTTAGTGACAACTGGACCATAAATATGTTAGTTCTTTAAAATAGAAAATCTGTAGAGTTTTATAATTGGTGTTCTTTTTTCTTAAAAACAAAATAAATCTAAGATGTAAGTATGTAACTGACATTCTTGGCTTCAACTTAGAGATGCGTTACTTTTGTTTTCTGCAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCTCTTGATTTTTCAAAAATTAGGGAAAATAGGAAACAAAACAAGAGAGACGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCATGGCCTCAGCCGCTCCCCCAACCACAACAGACTCTTTCCCCACTGAAAACCATCACCCCTACCATCAGAGTCACCATCCTCCACCAGTAAGATTCTTGCTCCTCCTCCCTAAGATTTGA

mRNA sequence

ATGGATGATCGGAAGGAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCTCTTGATTTTTCAAAAATTAGGGAAAATAGGAAACAAAACAAGAGAGACGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCATGGCCTCAGCCGCTCCCCCAACCACAACAGACTCTTTCCCCACTGAAAACCATCACCCCTACCATCAGAGTCACCATCCTCCACCAGTAAGATTCTTGCTCCTCCTCCCTAAGATTTGA

Coding sequence (CDS)

ATGGATGATCGGAAGGAGAAAACTGCTCCCTGGCTTTCAGTGCCACAGTTTGGAGATTGGGACCAGAAGGGACAGCTGCCTGACTACTCTCTTGATTTTTCAAAAATTAGGGAAAATAGGAAACAAAACAAGAGAGACGTGTCTCGGGCGAGTCTTGGAAATGAAGAGGAGCTCATGGCCTCAGCCGCTCCCCCAACCACAACAGACTCTTTCCCCACTGAAAACCATCACCCCTACCATCAGAGTCACCATCCTCCACCAGTAAGATTCTTGCTCCTCCTCCCTAAGATTTGA

Protein sequence

MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMASAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLLLPKI

Homology

[Close]

BLAST of Lag0012957 vs. NCBI nr
Match: KAG7027104.1 (hypothetical protein SDJN02_11115 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMA 60
          MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSKIRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1  MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDVSRASLGNEEELIA 60

Query: 61 SAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLLLPKI 98
           AAPPTTTDSFPTENHH Y QSHHP PVR LLL PKI
Sbjct: 61 PAAPPTTTDSFPTENHHSYRQSHHPSPVRLLLLRPKI 97

[Close]

BLAST of Lag0012957 vs. NCBI nr
Match: XP_022977957.1 (uncharacterized protein LOC111478092 [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMA 60
          MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSKIRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1  MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDVSRASLGNEEELIA 60

Query: 61 SAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLL 94
          SAAPPTTTDSFPT+NHHPYHQSHH PP R  +L
Sbjct: 61 SAAPPTTTDSFPTDNHHPYHQSHHSPPTRKSIL 93

[Close]

BLAST of Lag0012957 vs. NCBI nr
Match: XP_022133053.1 (uncharacterized protein LOC111005740 isoform X2 [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMA 60
          MDDRKEKTAPWLSVPQFGDWDQKG LPDYSLDFSKIRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1  MDDRKEKTAPWLSVPQFGDWDQKGPLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELIA 60

Query: 61 SAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLL 94
          SA PPT TDSFPTENHHPYHQSHHPPP R  +L
Sbjct: 61 SATPPTVTDSFPTENHHPYHQSHHPPPTRKSIL 93

[Close]

BLAST of Lag0012957 vs. NCBI nr
Match: XP_038881128.1 (uncharacterized protein LOC120072730 [Benincasa hispida])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMA 60
          MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSK+RENRKQNKR+VSRASLGNEEEL+ 
Sbjct: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKLRENRKQNKREVSRASLGNEEELIT 60

Query: 61 SAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLL 94
          SAAPPTTT+SFPT+NHHPYHQSHHPPP R  +L
Sbjct: 61 SAAPPTTTESFPTDNHHPYHQSHHPPPTRKSIL 93

[Close]

BLAST of Lag0012957 vs. NCBI nr
Match: XP_023545041.1 (uncharacterized protein LOC111804467 [Cucurbita pepo subsp. pepo] >KAG6604236.1 hypothetical protein SDJN03_04845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDDRKEKTAPWLSVPQFGDWDQKGQLPDYSLDFSKIRENRKQNKRDVSRASLGNEEELMA 60
          MDDRKEKTAPWLSVPQFGDWDQKGQ+PDYSLDFSKIRENRKQNKRDVSRASLGNEEEL+A
Sbjct: 1  MDDRKEKTAPWLSVPQFGDWDQKGQMPDYSLDFSKIRENRKQNKRDVSRASLGNEEELIA 60

Query: 61 SAAPPTTTDSFPTENHHPYHQSHHPPPVRFLLL 94
          SAAPPTTT+SFPT+NHHPYHQSHH PP R  +L
Sbjct: 61 SAAPPTTTNSFPTDNHHPYHQSHHSPPTRKSIL 93

The following BLAST results are available for this feature:

BLAST of Lag0012957 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027104.1	2.0e-43	91.75	hypothetical protein SDJN02_11115 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022977957.1	3.7e-42	91.40	uncharacterized protein LOC111478092 [Cucurbita maxima]	[more]
XP_022133053.1	6.3e-42	91.40	uncharacterized protein LOC111005740 isoform X2 [Momordica charantia]	[more]
XP_038881128.1	1.1e-41	89.25	uncharacterized protein LOC120072730 [Benincasa hispida]	[more]
XP_023545041.1	1.4e-41	90.32	uncharacterized protein LOC111804467 [Cucurbita pepo subsp. pepo] >KAG6604236.1 ...	[more]

BLAST of Lag0012957 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..75
None	No IPR available	PANTHER	PTHR33882:SF10	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012957.1	Lag0012957.1	mRNA