Lag0012898 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012898
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRING-type E3 ubiquitin transferase
Locationchr1: 45457392 .. 45458024 (+)
RNA-Seq ExpressionLag0012898
SyntenyLag0012898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGAAGGTTCCTCCTTCACTTCGCCACCGCCGCTAGTCCGTCGGAGCCGCCGCAGCCCCGTCCTGGGTTCGGGAGCTTCGACATGAACGTCGTAATGGTCCTTTCCGTTCTCCTCTGCGCTCTGGTTTGCTCTCTGGGTCTGAACGCGATCCTAAAATGCGCGTTGCGGTGCTCCACTCTGGTGGCTTCCATGTCGGGCCATGGCGGCGGGAGTTTGGTGGTGCACCCGAAAGGTGTTCGACGAAATGTGTTAAAGAAATTCCCGACGGTGGAGTTCTCGAAAGAGGCCAACAAACTGCGGGGAATCGATGGGGAGTGCGTGATTTGCTTGGCGGAGTTCGAGGCTGGGGATCGGGTTCGTGTTTTGCCCAACTGCTTCCATGGCTTCCATGTTCATTGCATCGACAAGTGGCTTAGTTCCCACACTTCCTGCCCCAAGTGCCGCAATTGCCTCACTGACACTTGCAGGAAGGTCGACTCCGGTTGTGGGGCGGCGACGGCGGTGGCCGGGAGTTCGTCCTCTGTTGGGCCGCCGCAGCCAGCGGAGGAGGTGGTGGTGGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGGTGTGCAACTATAGGGAAAGTAGTAGATGA

mRNA sequence

ATGTCTAGAAGGTTCCTCCTTCACTTCGCCACCGCCGCTAGTCCGTCGGAGCCGCCGCAGCCCCGTCCTGGGTTCGGGAGCTTCGACATGAACGTCGTAATGGTCCTTTCCGTTCTCCTCTGCGCTCTGGTTTGCTCTCTGGGTCTGAACGCGATCCTAAAATGCGCGTTGCGGTGCTCCACTCTGGTGGCTTCCATGTCGGGCCATGGCGGCGGGAGTTTGGTGGTGCACCCGAAAGGTGTTCGACGAAATGTGTTAAAGAAATTCCCGACGGTGGAGTTCTCGAAAGAGGCCAACAAACTGCGGGGAATCGATGGGGAGTGCGTGATTTGCTTGGCGGAGTTCGAGGCTGGGGATCGGGTTCGTGTTTTGCCCAACTGCTTCCATGGCTTCCATGTTCATTGCATCGACAAGTGGCTTAGTTCCCACACTTCCTGCCCCAAGTGCCGCAATTGCCTCACTGACACTTGCAGGAAGGTCGACTCCGGTTGTGGGGCGGCGACGGCGGTGGCCGGGAGTTCGTCCTCTGTTGGGCCGCCGCAGCCAGCGGAGGAGGTGGTGGTGGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGGTGTGCAACTATAGGGAAAGTAGTAGATGA

Coding sequence (CDS)

ATGTCTAGAAGGTTCCTCCTTCACTTCGCCACCGCCGCTAGTCCGTCGGAGCCGCCGCAGCCCCGTCCTGGGTTCGGGAGCTTCGACATGAACGTCGTAATGGTCCTTTCCGTTCTCCTCTGCGCTCTGGTTTGCTCTCTGGGTCTGAACGCGATCCTAAAATGCGCGTTGCGGTGCTCCACTCTGGTGGCTTCCATGTCGGGCCATGGCGGCGGGAGTTTGGTGGTGCACCCGAAAGGTGTTCGACGAAATGTGTTAAAGAAATTCCCGACGGTGGAGTTCTCGAAAGAGGCCAACAAACTGCGGGGAATCGATGGGGAGTGCGTGATTTGCTTGGCGGAGTTCGAGGCTGGGGATCGGGTTCGTGTTTTGCCCAACTGCTTCCATGGCTTCCATGTTCATTGCATCGACAAGTGGCTTAGTTCCCACACTTCCTGCCCCAAGTGCCGCAATTGCCTCACTGACACTTGCAGGAAGGTCGACTCCGGTTGTGGGGCGGCGACGGCGGTGGCCGGGAGTTCGTCCTCTGTTGGGCCGCCGCAGCCAGCGGAGGAGGTGGTGGTGGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGTTTGGTGTGCAACTATAGGGAAAGTAGTAGATGA

Protein sequence

MSRRFLLHFATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESSR
Homology
[Close]
BLAST of Lag0012898 vs. NCBI nr
Match: XP_023518448.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 171/214 (79.91%), Postives = 188/214 (87.85%), Query Frame = 0 

Query: 2   SRRFLLHFATA---ASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALR 61
           SRRFLL  ATA   A+PS  PQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALR
Sbjct: 6   SRRFLLPSATATAVATPSSLPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALR 65

Query: 62  CSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI--DGECVICLAEFE 121
           CSTL+AS S   GG+L +HPKGV RN+LKKFPTVE+SK++NK RGI  DGECVICLA+FE
Sbjct: 66  CSTLLASASARHGGNLAIHPKGVGRNILKKFPTVEYSKQSNKFRGIAMDGECVICLADFE 125

Query: 122 AGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSS 181
            GDRVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCL+DT RKVD+GCG  +AV GSSSS
Sbjct: 126 PGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG--SAVEGSSSS 185

Query: 182 VGPPQPAEEVVVVNVVIAPVEREGLVCNYRESSR 211
           VGPP P+EE V+VNV IAPVEREGL C+YR+SSR
Sbjct: 186 VGPPPPSEE-VLVNVGIAPVEREGLTCSYRDSSR 216

[Close]
BLAST of Lag0012898 vs. NCBI nr
Match: KAG7027130.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.3 bits (861), Expect = 1.9e-88
Identity = 169/219 (77.17%), Postives = 189/219 (86.30%), Query Frame = 0 

Query: 1   MSRRFLLHFATA-------ASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAIL 60
           ++RRFLL  ATA       A+PS PPQPRPGFGSFD+NVVMVLSVLLCALVCSLGLNAIL
Sbjct: 5   ITRRFLLPTATATATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVCSLGLNAIL 64

Query: 61  KCALRCSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI--DGECVIC 120
           KCALRCSTL+AS S   GG++ +HPKGV RN LKKFPTVE+SK++NK RGI  DGECVIC
Sbjct: 65  KCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVIC 124

Query: 121 LAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVA 180
           LA+FE GDRVR+LP C+HGFHVHCIDKWLSSHTSCPKCRNCL+DT RKVD+GCG  +AV 
Sbjct: 125 LADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG--SAVE 184

Query: 181 GSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESSR 211
           GSSSSVGPP P+EE VVVNV IAPVEREGL C+YR+SSR
Sbjct: 185 GSSSSVGPPPPSEE-VVVNVGIAPVEREGLTCSYRDSSR 220

[Close]
BLAST of Lag0012898 vs. NCBI nr
Match: XP_038882744.1 (RING-H2 finger protein ATL78 [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 2.8e-87
Identity = 172/214 (80.37%), Postives = 184/214 (85.98%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRR LL  AT AASP E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRLLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRN+LKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNILKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCG-----AATAVAGSS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GCG        A+A SS
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCPKITAGCGQEAPITTAALAESS 185

Query: 182 SSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           SSV P  PA E V VNVVIAPVEREGL+ NYRES
Sbjct: 186 SSVDP--PAAEEVGVNVVIAPVEREGLISNYRES 217

[Close]
BLAST of Lag0012898 vs. NCBI nr
Match: XP_008441014.1 (PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa] >TYK25707.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 4.8e-87
Identity = 174/215 (80.93%), Postives = 186/215 (86.51%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRRFLL   T AASP E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRNVLKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAV------AGS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GCG  T V      A S
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAES 185

Query: 182 SSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           SSSV PP+ AEE V VNVVIAPVEREG++ NYRES
Sbjct: 186 SSSVEPPR-AEE-VEVNVVIAPVEREGMINNYRES 218

[Close]
BLAST of Lag0012898 vs. NCBI nr
Match: XP_004148642.1 (RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein Csa_003943 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-86
Identity = 172/212 (81.13%), Postives = 186/212 (87.74%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRRFL+  AT AA+P E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRNVLKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAV---AGSSSS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GC   T V   A SSSS
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAAESSSS 185

Query: 182 VGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           V PP+ AEE V VNVVIAPVEREG++ NYRES
Sbjct: 186 VEPPR-AEE-VGVNVVIAPVEREGMINNYRES 215

[Close]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-47
Identity = 103/198 (52.02%), Postives = 130/198 (65.66%), Query Frame = 0 

Query: 2   SRRFLLHFATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCST 61
           SR+ L H     SP+  P P  G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS 
Sbjct: 27  SRKLLFH-THDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSN 86

Query: 62  LVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDRV 121
           LV S +G     + +   GV+R  LK F TV +S E N L G+D EC ICL+EF A +RV
Sbjct: 87  LVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 122 RVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPPQ 181
           ++LP C HGFHV CIDKWLSSH+SCP CR+CL  TC K+        A    +SS+   Q
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI--------ADCSQTSSLNSTQ 206

Query: 182 PAEEVVVVNVVIAPVERE 200
           P ++ +++   IAP+E E
Sbjct: 207 PPQDSIILQ--IAPLEPE 212

[Close]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-39
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           +SR+ LLH          FA A SP    +      +   NV+M+LS+L+C ++C LGL+
Sbjct: 22  VSRKLLLHNPFDHNTQRAFAVAPSPLITHE-----NNLSGNVMMLLSILICGIICCLGLH 81

Query: 61  AILKCALRCSTL------VASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CALR ST       V S+S   G S     KG+++  L+ FP V +S E N L G+
Sbjct: 82  YIIRCALRRSTRFMISEPVPSLSSTRGSS----NKGIKKKALRMFPVVSYSPEMN-LPGL 141

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
           D ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCRNCL +TC+K+    
Sbjct: 142 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDF 201

Query: 181 GAATAVAGSSS-----SVGPPQPAEEVVV----------VNVVIAPVEREGLVCNYRESS 210
             A +V    +     ++ P +P E V+V          V V+IAP+E EG V   RE S
Sbjct: 202 SQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTEIVIVMIAPLEPEGRVNTIREIS 251

[Close]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-36
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 0 

Query: 23  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA-LRCSTLV----ASMSGHGGGSLVVH 82
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA +R  + +     S+      S V  
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 83  PKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDRVRVLPNCFHGFHVHCID 142
            KG+++  LK  P V +S E N L G+  ECVICL++F AG+++RVLP C HGFH+ CID
Sbjct: 103 NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCID 162

Query: 143 KWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVE 202
           KWL+ H +CPKCR+CL DTC+KV S C AA  VA +++             +++ I+P+E
Sbjct: 163 KWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATE-----------SIDIRISPLE 220

Query: 203 REGLVCNYRESS 210
            E  V  +RESS
Sbjct: 223 PEARVATFRESS 220

[Close]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-36
Identity = 91/225 (40.44%), Postives = 132/225 (58.67%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           ++R+ LLH          FA A SP    +      +   NV+M+LSVL+C ++C LGL+
Sbjct: 22  VTRKLLLHDPFDHNSLRVFAVAPSPLITHE-----NNLKGNVLMLLSVLICGIICCLGLH 81

Query: 61  AILKCALRCSTL------VASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CA R S+       ++S+S     S     KG+++  L+ FP V +S+E N L GI
Sbjct: 82  YIIRCAFRRSSRFMISEPISSLSTPRSSS----NKGIKKKALRMFPVVSYSREMN-LPGI 141

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
             ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCR+CL +TC+K+    
Sbjct: 142 GEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDF 201

Query: 181 GAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESS 210
             A ++A +        P E V+   V I P+E EG V  +RESS
Sbjct: 202 SQADSMAST--------PTESVI---VRIDPLEPEGRVNTFRESS 225

[Close]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.9e-36
Identity = 93/225 (41.33%), Postives = 127/225 (56.44%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           +SR+ LLH          FA A SP    +      +   NV+M+LSVL+C ++C LGL+
Sbjct: 23  VSRKLLLHNPFDHNTQRAFAVAPSPLITHE-----NNLSGNVLMLLSVLICGIICCLGLH 82

Query: 61  AILKCALR------CSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CA R       S  +A +S   G S     KG+ +  L+ FP V +S E N L G+
Sbjct: 83  YIIRCAFRRTSSFMISEPIAGLSTPCGSS----NKGINKKALRMFPVVSYSPEMN-LPGL 142

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
             ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCR+CL +TC+K+    
Sbjct: 143 GEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDF 202

Query: 181 GAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESS 210
             A  VA +        P   V+   V IAP+E EG V   RESS
Sbjct: 203 SQADQVAAT--------PTASVI---VRIAPLEPEGRVNILRESS 226

[Close]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match: A0A5A7SLG8 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00380 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.3e-87
Identity = 174/215 (80.93%), Postives = 186/215 (86.51%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRRFLL   T AASP E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRNVLKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAV------AGS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GCG  T V      A S
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAES 185

Query: 182 SSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           SSSV PP+ AEE V VNVVIAPVEREG++ NYRES
Sbjct: 186 SSSVEPPR-AEE-VEVNVVIAPVEREGMINNYRES 218

[Close]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match: A0A1S3B203 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.3e-87
Identity = 174/215 (80.93%), Postives = 186/215 (86.51%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRRFLL   T AASP E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRNVLKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAV------AGS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GCG  T V      A S
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAATAAES 185

Query: 182 SSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           SSSV PP+ AEE V VNVVIAPVEREG++ NYRES
Sbjct: 186 SSSVEPPR-AEE-VEVNVVIAPVEREGMINNYRES 218

[Close]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match: A0A0A0KF92 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.7e-87
Identity = 172/212 (81.13%), Postives = 186/212 (87.74%), Query Frame = 0 

Query: 2   SRRFLLHFAT-AASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCS 61
           SRRFL+  AT AA+P E  QPRPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS
Sbjct: 6   SRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCS 65

Query: 62  TLVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGD 121
           TL+A++S G GGG+LVVHPKGVRRNVLKKFPTVE+SKE NKLRGIDGECVICL EFEAGD
Sbjct: 66  TLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGD 125

Query: 122 RVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAV---AGSSSS 181
           RVRVLP C+HGFHVHCIDKWLSSHTSCPKCRNCLTDTC K+ +GC   T V   A SSSS
Sbjct: 126 RVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAAESSSS 185

Query: 182 VGPPQPAEEVVVVNVVIAPVEREGLVCNYRES 209
           V PP+ AEE V VNVVIAPVEREG++ NYRES
Sbjct: 186 VEPPR-AEE-VGVNVVIAPVEREGMINNYRES 215

[Close]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match: A0A6J1HJ58 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111463410 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.4e-86
Identity = 166/216 (76.85%), Postives = 185/216 (85.65%), Query Frame = 0 

Query: 1   MSRRFLLHFATA---ASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           ++RRFLL  ATA   A+PS PPQPRPGFGSFD+NVVMVLSVLLCALV SLGLNAILKCAL
Sbjct: 5   ITRRFLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAILKCAL 64

Query: 61  RCSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI--DGECVICLAEF 120
           RCSTL+AS S   GG++ +HPKGV RN LKKFPTVE+SK++NK RGI  DGECVICLA+F
Sbjct: 65  RCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADF 124

Query: 121 EAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSS 180
           E GDRVR+LP C+HGFHVHCIDKWLSSHTSCPKCRNCL+DT RKVD+GCG  +AV GSSS
Sbjct: 125 EPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG--SAVEGSSS 184

Query: 181 SVG-PPQPAEEVVVVNVVIAPVEREGLVCNYRESSR 211
           SVG PP P  E VVVNV IAPVEREGL C+YR+S R
Sbjct: 185 SVGPPPPPPSEEVVVNVGIAPVEREGLRCSYRDSGR 218

[Close]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match: A0A6J1GCL7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.0e-82
Identity = 162/208 (77.88%), Postives = 172/208 (82.69%), Query Frame = 0 

Query: 2   SRRFLLHFATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCST 61
           SRR LL  A  ASP    QPRPGFGSFDMNVVMVLSVLLCALVCSLGLNA+LKCALRCS+
Sbjct: 6   SRRLLLP-AVTASPPVSAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNALLKCALRCSS 65

Query: 62  LVASMS-GHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDR 121
           L+A+MS G GGG   VHPKGVRRNVLKKFPTVE+ KE NKLRGIDGECVICL+EFE GDR
Sbjct: 66  LLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDR 125

Query: 122 VRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPP 181
           VRVLP CFHGFHVHCIDKWLSSH SCPKCRNCLTDTC K+ SG G+  A  G   ++ PP
Sbjct: 126 VRVLPICFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASG-GSQEAPDGEFIAIDPP 185

Query: 182 QPAE--EVVVVNVVIAPVEREGLVCNYR 207
            P    E VVVNVVIAPVEREGLVCNYR
Sbjct: 186 PPPPPGEEVVVNVVIAPVEREGLVCNYR 211

[Close]
BLAST of Lag0012898 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-49
Identity = 103/198 (52.02%), Postives = 130/198 (65.66%), Query Frame = 0 

Query: 2   SRRFLLHFATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCST 61
           SR+ L H     SP+  P P  G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS 
Sbjct: 27  SRKLLFH-THDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSN 86

Query: 62  LVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDRV 121
           LV S +G     + +   GV+R  LK F TV +S E N L G+D EC ICL+EF A +RV
Sbjct: 87  LVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 122 RVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPPQ 181
           ++LP C HGFHV CIDKWLSSH+SCP CR+CL  TC K+        A    +SS+   Q
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKI--------ADCSQTSSLNSTQ 206

Query: 182 PAEEVVVVNVVIAPVERE 200
           P ++ +++   IAP+E E
Sbjct: 207 PPQDSIILQ--IAPLEPE 212

[Close]
BLAST of Lag0012898 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 162.2 bits (409), Expect = 4.7e-40
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           +SR+ LLH          FA A SP    +      +   NV+M+LS+L+C ++C LGL+
Sbjct: 22  VSRKLLLHNPFDHNTQRAFAVAPSPLITHE-----NNLSGNVMMLLSILICGIICCLGLH 81

Query: 61  AILKCALRCSTL------VASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CALR ST       V S+S   G S     KG+++  L+ FP V +S E N L G+
Sbjct: 82  YIIRCALRRSTRFMISEPVPSLSSTRGSS----NKGIKKKALRMFPVVSYSPEMN-LPGL 141

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
           D ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCRNCL +TC+K+    
Sbjct: 142 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDF 201

Query: 181 GAATAVAGSSS-----SVGPPQPAEEVVV----------VNVVIAPVEREGLVCNYRESS 210
             A +V    +     ++ P +P E V+V          V V+IAP+E EG V   RE S
Sbjct: 202 SQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLEPTEIVIVMIAPLEPEGRVNTIREIS 251

[Close]
BLAST of Lag0012898 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-37
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 0 

Query: 23  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA-LRCSTLV----ASMSGHGGGSLVVH 82
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA +R  + +     S+      S V  
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSV-- 102

Query: 83  PKGVRRNVLKKFPTVEFSKEANKLRGIDGECVICLAEFEAGDRVRVLPNCFHGFHVHCID 142
            KG+++  LK  P V +S E N L G+  ECVICL++F AG+++RVLP C HGFH+ CID
Sbjct: 103 NKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCID 162

Query: 143 KWLSSHTSCPKCRNCLTDTCRKVDSGCGAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVE 202
           KWL+ H +CPKCR+CL DTC+KV S C AA  VA +++             +++ I+P+E
Sbjct: 163 KWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATE-----------SIDIRISPLE 220

Query: 203 REGLVCNYRESS 210
            E  V  +RESS
Sbjct: 223 PEARVATFRESS 220

[Close]
BLAST of Lag0012898 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-37
Identity = 91/225 (40.44%), Postives = 132/225 (58.67%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           ++R+ LLH          FA A SP    +      +   NV+M+LSVL+C ++C LGL+
Sbjct: 22  VTRKLLLHDPFDHNSLRVFAVAPSPLITHE-----NNLKGNVLMLLSVLICGIICCLGLH 81

Query: 61  AILKCALRCSTL------VASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CA R S+       ++S+S     S     KG+++  L+ FP V +S+E N L GI
Sbjct: 82  YIIRCAFRRSSRFMISEPISSLSTPRSSS----NKGIKKKALRMFPVVSYSREMN-LPGI 141

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
             ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCR+CL +TC+K+    
Sbjct: 142 GEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDF 201

Query: 181 GAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESS 210
             A ++A +        P E V+   V I P+E EG V  +RESS
Sbjct: 202 SQADSMAST--------PTESVI---VRIDPLEPEGRVNTFRESS 225

[Close]
BLAST of Lag0012898 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-37
Identity = 93/225 (41.33%), Postives = 127/225 (56.44%), Query Frame = 0 

Query: 1   MSRRFLLH----------FATAASPSEPPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLN 60
           +SR+ LLH          FA A SP    +      +   NV+M+LSVL+C ++C LGL+
Sbjct: 23  VSRKLLLHNPFDHNTQRAFAVAPSPLITHE-----NNLSGNVLMLLSVLICGIICCLGLH 82

Query: 61  AILKCALR------CSTLVASMSGHGGGSLVVHPKGVRRNVLKKFPTVEFSKEANKLRGI 120
            I++CA R       S  +A +S   G S     KG+ +  L+ FP V +S E N L G+
Sbjct: 83  YIIRCAFRRTSSFMISEPIAGLSTPCGSS----NKGINKKALRMFPVVSYSPEMN-LPGL 142

Query: 121 DGECVICLAEFEAGDRVRVLPNCFHGFHVHCIDKWLSSHTSCPKCRNCLTDTCRKVDSGC 180
             ECVICL++F +G+++R+LP C HGFHV CIDKWL  H +CPKCR+CL +TC+K+    
Sbjct: 143 GEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDF 202

Query: 181 GAATAVAGSSSSVGPPQPAEEVVVVNVVIAPVEREGLVCNYRESS 210
             A  VA +        P   V+   V IAP+E EG V   RESS
Sbjct: 203 SQADQVAAT--------PTASVI---VRIAPLEPEGRVNILRESS 226

The following BLAST results are available for this feature:
BLAST of Lag0012898 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518448.11.1e-8879.91RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo][more]
KAG7027130.11.9e-8877.17RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_038882744.12.8e-8780.37RING-H2 finger protein ATL78 [Benincasa hispida][more]
XP_008441014.14.8e-8780.93PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 fin... [more]
XP_004148642.11.4e-8681.13RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein ... [more]
BLAST of Lag0012898 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQG71.3e-4752.02RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1[more]
P0C0346.6e-3941.25RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1[more]
Q9LS991.8e-3643.75RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1[more]
Q6NML06.8e-3640.44E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ... [more]
Q94BY68.9e-3641.33RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1[more]
BLAST of Lag0012898 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SLG82.3e-8780.93RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3B2032.3e-8780.93RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 ... [more]
A0A0A0KF926.7e-8781.13RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE... [more]
A0A6J1HJ584.4e-8676.85RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111463410... [more]
A0A6J1GCL75.0e-8277.88RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965... [more]
BLAST of Lag0012898 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G49230.19.4e-4952.02RING/U-box superfamily protein [more]
AT1G49220.14.7e-4041.25RING/U-box superfamily protein [more]
AT3G18773.11.3e-3743.75RING/U-box superfamily protein [more]
AT1G49210.14.8e-3740.44RING/U-box superfamily protein [more]
AT1G49200.16.3e-3741.33RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 108..149
e-value: 4.9E-6
score: 36.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 107..150
e-value: 1.6E-13
score: 50.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 108..150
score: 12.031935
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 73..155
e-value: 1.9E-21
score: 77.5
IPR044602RING-H2 finger protein ATL10/ATL75-79PANTHERPTHR46905RING-H2 FINGER PROTEIN ATL78coord: 2..207
NoneNo IPR availablePANTHERPTHR46905:SF7RING-H2 FINGER PROTEIN ATL78coord: 2..207
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 107..150
e-value: 1.5227E-15
score: 65.7861
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 107..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012898.1Lag0012898.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016740 transferase activity