Lag0012895 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012895
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr1: 45431658 .. 45434335 (+)
RNA-Seq ExpressionLag0012895
SyntenyLag0012895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTGGTCAGGAGATATCTTGCACTTAGCACGGAAAGGAATACAATTAGAGAGGGTGGAGAGAAATCTCATGAGAAGTATTTAAAGCTCAAGACATCTCATCCTACCATGGAGCCATGCGGTAGGCCAAGAGGCATTCTGATAACTCAAGACGAGTTTGAATATCAAGTTCAAGTAGTAGTGGCTGATGCCACCACTCATATGGAAAATATACAGCCTAGGTCTGACTGGTAGTTCTGAGATATTTATAGCCATCATTATCATTAAAGGAATGTATTTTGCTTTGACTTGTTTGGAAGAGGTTATGGAGCTTCTGGGAGAGTTTAATATCAGTAATTCAACCAGGGAAAGTGTGGTGGATCAGTGGCTGGGAACTACGAATTGCTGTAATAAATCAATGAAGAATAATTTCCTAATTTATTTTCCTCTTAGAAGCAAGGACATAGATATAGATACTAAATAGAAGCACGAAAGTGAGCATAGCTCAATAGTAATTGACATGTATCCTCGACCAAAAGGTTAGAGATTCAAATCCCAGACCCTCAAATGTTATTAAACTCAAATATATATATATATATATATAAAGTACATGAAATGAATACATCAATTCAACATTTTCAAGAAAAATTGGGAACGAACCAAAAAATACATTCAATATAATTTACGTATGAAAATTATATTTGTATACTTTTACACGTTTCAGTGCTTTTAATATGATGTAAAATTTAAATATTACATATTCTCATTGTATGAACTGTCGTAACTATACATATTTTCCTTTTTGAAGAGGAAATGAGACTTTTCATTAATGCTGAAAAAGGTAGAAAAGATAATAGAAACCAAGCCTACAATAGTAGACTATGGAAGAAGAAAGCAGTGAAAAACTGAAGCTAACTATACATATTGTCATTGTAATTTACAATAGTAGATTAATCAATTTATAATATTCAGTTTTAAGGAGATTTTTAGTATCTTTAGCTAAACTACATTTTCCAAGAACAAATACAGTCAAATCTCCCCATAAAATATTCAGATAACATTTTTCAAGGACAAATACAGTCAAATATCCCCATAAAATAAACAATTTTTTTAAAAAAACTGTTCATCTCATATATCATTACACACCTTCTCACACTACATGAAGAGCAATTCTACCCTGTCCAAGGTCCACCACTTTTCAGTTTCTAATGATTAGTGTACCCTCATTTTAAGTAAGCTAGGGTCTCCAAGTTCATTCGCACAGTGTAAACGTCATTGAATCATATTAGAGGTGGGGTGTATTCATATAGGTACCATACAAAAGTCCTCGGAAGTCATTTCAACTCTTTTGGATTATGGACTGTTTCTTACTCTTTTCAAGATAGTGATGGTAGTTCGACCTGTTCCTAGAAGAGTTCTTGGAGTGCTGAGGGATGCGCTCACATAGCGGTAGAGTTCGTTCTCTTTGTCTTAAAAGAAGATGGTCAAGCATTAGATGGACTATCATTTGATAGGAAGTAGATGAATAGAGATTCTAGGAATTCTGATTTTCTCCTTGTATCACTTATCAGTCCACAAATTGAAGATTTTGGGAACCAGAGGCGCAAAAAACAAAAACAAAGACAAAACATACAAAAACAATTCCCAGTAGTTGATAATAAAAATAAGGAAATAAATAAAGAGGAAAACCACTTAACAAACTACAACCAGAAAATAAAATAAAATGTCAATCTAGGAGGCCATTTCCCTGGTCTCTAAACAGCCAAAATTCCAAAGAAATCTAAATCTTTTATATGAGATCTCTTGATCGTATATTGAATAGTGTCCAAGGAATGATTAGTTGTCTTTGGTGAAGCTAATGCAGGAGACGGTCATCCTCGTCACCTCTTTTCCCAAAGAATTTTTGCATGCAGCCTCAGGAACAGACAATGTTTACCTTCAAAGTTCAACCTATCTCTGGGCTTGTTTGGAATGACTTTCCAAGTACTTGAAAAGTCATTCCAAACAAGCCCATGGTAAGCCTCCAAATTGATTAAGGATTTCTTTCTGTGAACACTCCCTCCAATAATAAAACTAAACTCTGAACTTTCTCCCCGTACTCCAATGGGGAAGGAATCTTTGATGGAAGGTTTGCACAAAATATTTCCGGACAGAGAGAAGAAAGTTAAGGAGAAACATGATTCTATTATATAATTTCTCTTCTTAGGATGTTTTTTTTTTAATAGGAAACAAAGACCATTCATTGATATGATGAAATGGATAACAAAAGGGTCCTATCGGATGTTAACTAGAAGGAATCGTGCTTGATGAATACAAGTGCAAGAGAAAGAAGGGTTGGGTCGTCAAGCTTGATGTCGAGAAGGTTAATGACATGTTGGATTGAGATTTTCTCTTGAAAGTCTTGCATAGAAAAGGCTTTGAGCTGAGATGGATCTCGTGGATAAAACTTAGAAAGCTGCATATCTAATACTTCTCCCACTTATGTGAATGGCAGGCTGAGATGGCTCATTCAGGTTTTTAAAGGTCTTATGCAAATGGACCCCTCGGCCCACTCCCTTTTTGGCATTGTTGCTGATGTGTTTAGCTTGCTAGCAGATAAAGGCTTTGAGCATGGCTGCCTTCAAGGTTTTGTTGTGGGTAGTAATTCCATTCGCATAAACCACCTTCAATTTGCTAAAGAAACTAAAGCTAAATAA

mRNA sequence

ATGGCCCTGGTCAGGAGATATCTTGCACTTAGCACGGAAAGGAATACAATTAGAGAGGGTGGAGAGAAATCTCATGAGAAGTATTTAAAGCTCAAGACATCTCATCCTACCATGGAGCCATGCGGTAGGCCAAGAGGCATTCTGATAACTCAAGACGAGTTTGAATATCAAGTTCAAGTAGTAGTGGCTGATGCCACCACTCATATGGAAAATATACAGCCTAGGTCTGACTGGAGACGGTCATCCTCGTCACCTCTTTTCCCAAAGAATTTTTGCATGCAGCCTCAGGAACAGACAATGTTTACCTTCAAAGTTCAACCTATCTCTGGGCTTGTTTGGAATGACTTTCCAAAAAGCTGCATATCTAATACTTCTCCCACTTATGTGAATGGCAGGCTGAGATGGCTCATTCAGGTTTTTAAAGGTCTTATGCAAATGGACCCCTCGGCCCACTCCCTTTTTGGCATTGTTGCTGATGTGTTTAGCTTGCTAGCAGATAAAGGCTTTGAGCATGGCTGCCTTCAAGGTTTTGTTGTGGGTAGTAATTCCATTCGCATAAACCACCTTCAATTTGCTAAAGAAACTAAAGCTAAATAA

Coding sequence (CDS)

ATGGCCCTGGTCAGGAGATATCTTGCACTTAGCACGGAAAGGAATACAATTAGAGAGGGTGGAGAGAAATCTCATGAGAAGTATTTAAAGCTCAAGACATCTCATCCTACCATGGAGCCATGCGGTAGGCCAAGAGGCATTCTGATAACTCAAGACGAGTTTGAATATCAAGTTCAAGTAGTAGTGGCTGATGCCACCACTCATATGGAAAATATACAGCCTAGGTCTGACTGGAGACGGTCATCCTCGTCACCTCTTTTCCCAAAGAATTTTTGCATGCAGCCTCAGGAACAGACAATGTTTACCTTCAAAGTTCAACCTATCTCTGGGCTTGTTTGGAATGACTTTCCAAAAAGCTGCATATCTAATACTTCTCCCACTTATGTGAATGGCAGGCTGAGATGGCTCATTCAGGTTTTTAAAGGTCTTATGCAAATGGACCCCTCGGCCCACTCCCTTTTTGGCATTGTTGCTGATGTGTTTAGCTTGCTAGCAGATAAAGGCTTTGAGCATGGCTGCCTTCAAGGTTTTGTTGTGGGTAGTAATTCCATTCGCATAAACCACCTTCAATTTGCTAAAGAAACTAAAGCTAAATAA

Protein sequence

MALVRRYLALSTERNTIREGGEKSHEKYLKLKTSHPTMEPCGRPRGILITQDEFEYQVQVVVADATTHMENIQPRSDWRRSSSSPLFPKNFCMQPQEQTMFTFKVQPISGLVWNDFPKSCISNTSPTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKETKAK
Homology
[Close]
BLAST of Lag0012895 vs. NCBI nr
Match: RVW53508.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-10
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W  + + C+S+ S    VNG  +  ++  KGL Q DP +H LF IVADV S +  K  E 
Sbjct: 565 WRIWMRGCLSSVSYAILVNGNAKEWVKASKGLRQGDPLSHFLFTIVADVLSRMMLKAEEK 624

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N IR++HLQFA +T
Sbjct: 625 SALEGFRVGRNRIRVSHLQFADDT 648

[Close]
BLAST of Lag0012895 vs. NCBI nr
Match: CAN65815.1 (hypothetical protein VITISV_000091 [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W  + + C+S+ S    VNG  +W ++  +GL Q +P +  LF IVADV S +  K  E 
Sbjct: 663 WRKWMRGCLSSVSFAVLVNGNXKWWVKASRGLRQGBPLSPFLFXIVADVLSRMLLKAEEX 722

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N  R++HLQFA +T
Sbjct: 723 NVLEGFRVGRNRTRVSHLQFADDT 746

[Close]
BLAST of Lag0012895 vs. NCBI nr
Match: CAN62231.1 (hypothetical protein VITISV_010992 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-09
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E 
Sbjct: 610 WKNWMRGCLSSVSYAILVNGNAKGWVEAYRGLRQGDPLSHFLFTIVANVLSRMMLRAKER 669

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N  R++HLQFA +T
Sbjct: 670 SLLEGFKVGRNRTRVSHLQFADDT 693

[Close]
BLAST of Lag0012895 vs. NCBI nr
Match: RVX19788.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-09
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E 
Sbjct: 11  WKNWMRGCLSSVSYAILVNGNAKGWVEAYRGLRQGDPLSHFLFTIVANVLSRMMLRAKER 70

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N  R++HLQFA +T
Sbjct: 71  SLLEGFKVGRNRTRVSHLQFADDT 94

[Close]
BLAST of Lag0012895 vs. NCBI nr
Match: RVW19681.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-09
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 110 GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKG 169
           GL W  + + C+S+ S    VNG ++  ++  +GL Q DP +  LF IVADV S +  K 
Sbjct: 92  GLRWRKWMRGCLSSISFAVLVNGNVKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKA 151

Query: 170 FEHGCLQGFVVGSNSIRINHLQFAKET 196
            E   L+GF VG N  R++HLQFA +T
Sbjct: 152 EERNVLEGFRVGRNRTRVSHLQFADDT 178

[Close]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match: A0A438F0I1 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_485 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.8e-10
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W  + + C+S+ S    VNG  +  ++  KGL Q DP +H LF IVADV S +  K  E 
Sbjct: 565 WRIWMRGCLSSVSYAILVNGNAKEWVKASKGLRQGDPLSHFLFTIVADVLSRMMLKAEEK 624

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N IR++HLQFA +T
Sbjct: 625 SALEGFRVGRNRIRVSHLQFADDT 648

[Close]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match: A0A803PZR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.2e-10
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 110 GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKG 169
           G  W  + + C+S TS   +VNGR R   +  +GL Q DP +  LF +VAD+   + DK 
Sbjct: 540 GSTWRKWIRGCLSTTSFSIFVNGRPRGKFRASRGLRQGDPLSPFLFTLVADILGRMVDKA 599

Query: 170 FEHGCLQGFVVGSNSIRINHLQFAK 194
              G L GF VG + I+I+HLQF K
Sbjct: 600 VNSGSLSGFRVGKDKIQISHLQFVK 624

[Close]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match: A5BLZ9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000091 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W  + + C+S+ S    VNG  +W ++  +GL Q +P +  LF IVADV S +  K  E 
Sbjct: 663 WRKWMRGCLSSVSFAVLVNGNXKWWVKASRGLRQGBPLSPFLFXIVADVLSRMLLKAEEX 722

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N  R++HLQFA +T
Sbjct: 723 NVLEGFRVGRNRTRVSHLQFADDT 746

[Close]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W  + + C+S+TS   +VNGR+R      +GL Q DP +  LF +VADV   + DK  E 
Sbjct: 607 WRKWIRGCVSSTSFSIFVNGRVRGKFHGSRGLRQGDPLSPFLFTLVADVLGRMVDKAVET 666

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
               GF +G ++IR++HLQFA +T
Sbjct: 667 EAFSGFQIGKDNIRLSHLQFADDT 690

[Close]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match: A5C9R9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_010992 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 113 WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEH 172
           W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E 
Sbjct: 610 WKNWMRGCLSSVSYAILVNGNAKGWVEAYRGLRQGDPLSHFLFTIVANVLSRMMLRAKER 669

Query: 173 GCLQGFVVGSNSIRINHLQFAKET 196
             L+GF VG N  R++HLQFA +T
Sbjct: 670 SLLEGFKVGRNRTRVSHLQFADDT 693

The following BLAST results are available for this feature:
BLAST of Lag0012895 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW53508.19.9e-1045.24Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
CAN65815.12.2e-0941.67hypothetical protein VITISV_000091 [Vitis vinifera][more]
CAN62231.12.9e-0940.48hypothetical protein VITISV_010992 [Vitis vinifera][more]
RVX19788.12.9e-0940.48putative ribonuclease H protein [Vitis vinifera][more]
RVW19681.13.8e-0942.53putative mitochondrial protein [Vitis vinifera][more]
BLAST of Lag0012895 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438F0I14.8e-1045.24Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A803PZR98.2e-1042.35Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A5BLZ91.1e-0941.67Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A803P8A01.1e-0941.67Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A5C9R91.4e-0940.48Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
BLAST of Lag0012895 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012895.1Lag0012895.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050789 regulation of biological process
cellular_component GO:0110165 cellular anatomical entity