Lag0012894 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012894
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	autophagy-related protein 13b
Location	chr1: 45430750 .. 45431094 (-)
RNA-Seq Expression	Lag0012894
Synteny	Lag0012894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAACCCGGGGGATTTTTCCCAATTCGTAAATCTCAAGATGCTGCTGTTGGCGCCCTAGTACGTATGCTGCAAAAAGCTCCACCACTTCGCCAAGATTTCACCAATTCAACCACCGATCTTTTACGACCCTCTACACCTGATTCCCCAAGCAGAAACATCCAACAGGGAAATCAGATATCGGAGACATTGGCTTCAAAGGGTCGCTATGCTGTTTCCTCAAGTATCACAGCCTCTGGTCTTTTCATGCCCAAAACTACAGCTGATGCATTGGAAGAACTACAGAGCTACAGTGAGATGAAAAATTTGTTGCTCAGGCAGGCTGGCAAGACTCACACATAG

mRNA sequence

ATGCTGGAACCCGGGGGATTTTTCCCAATTCGTAAATCTCAAGATGCTGCTGTTGGCGCCCTAGTACGTATGCTGCAAAAAGCTCCACCACTTCGCCAAGATTTCACCAATTCAACCACCGATCTTTTACGACCCTCTACACCTGATTCCCCAAGCAGAAACATCCAACAGGGAAATCAGATATCGGAGACATTGGCTTCAAAGGGTCGCTATGCTGTTTCCTCAAGTATCACAGCCTCTGGTCTTTTCATGCCCAAAACTACAGCTGATGCATTGGAAGAACTACAGAGCTACAGTGAGATGAAAAATTTGTTGCTCAGGCAGGCTGGCAAGACTCACACATAG

Coding sequence (CDS)

ATGCTGGAACCCGGGGGATTTTTCCCAATTCGTAAATCTCAAGATGCTGCTGTTGGCGCCCTAGTACGTATGCTGCAAAAAGCTCCACCACTTCGCCAAGATTTCACCAATTCAACCACCGATCTTTTACGACCCTCTACACCTGATTCCCCAAGCAGAAACATCCAACAGGGAAATCAGATATCGGAGACATTGGCTTCAAAGGGTCGCTATGCTGTTTCCTCAAGTATCACAGCCTCTGGTCTTTTCATGCCCAAAACTACAGCTGATGCATTGGAAGAACTACAGAGCTACAGTGAGATGAAAAATTTGTTGCTCAGGCAGGCTGGCAAGACTCACACATAG

Protein sequence

MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKTHT

Homology

[Close]

BLAST of Lag0012894 vs. NCBI nr
Match: KAA0025544.1 (autophagy-related protein 13b isoform X1 [Cucumis melo var. makuwa] >TYK25704.1 autophagy-related protein 13b isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47
Identity = 102/114 (89.47%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQ 60
           MLEPGGFFP+RKSQDAAVGALVRMLQKAPPLRQDFTNST DL +P TPDSPSRNIQ GNQ
Sbjct: 1   MLEPGGFFPLRKSQDAAVGALVRMLQKAPPLRQDFTNSTADLGQPPTPDSPSRNIQLGNQ 60

Query: 61  ISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKTHT 115
           ISE+LASK RYA SSSI ASGLF+PKTTADALEELQSY EMKNLLLRQAGKTHT
Sbjct: 61  ISESLASKSRYAPSSSIAASGLFVPKTTADALEELQSYREMKNLLLRQAGKTHT 114

[Close]

BLAST of Lag0012894 vs. NCBI nr
Match: XP_008441017.1 (PREDICTED: autophagy-related protein 13b isoform X1 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47
Identity = 102/114 (89.47%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQ 60
           MLEPGGFFP+RKSQDAAVGALVRMLQKAPPLRQDFTNST DL +P TPDSPSRNIQ GNQ
Sbjct: 531 MLEPGGFFPLRKSQDAAVGALVRMLQKAPPLRQDFTNSTADLGQPPTPDSPSRNIQLGNQ 590

Query: 61  ISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKTHT 115
           ISE+LASK RYA SSSI ASGLF+PKTTADALEELQSY EMKNLLLRQAGKTHT
Sbjct: 591 ISESLASKSRYAPSSSIAASGLFVPKTTADALEELQSYREMKNLLLRQAGKTHT 644

[Close]

BLAST of Lag0012894 vs. NCBI nr
Match: XP_004148643.1 (autophagy-related protein 13b [Cucumis sativus] >KAE8647466.1 hypothetical protein Csa_003325 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQ 60
           MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNST DL +P TPDSPSRNIQ+GNQ
Sbjct: 531 MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTADLGQPPTPDSPSRNIQRGNQ 590

Query: 61  ISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKTHT 115
           ISE+LA K RYA SSSI ASGLF+PKTTADALEELQSY EMKNLL+RQAGKTHT
Sbjct: 591 ISESLALKSRYAPSSSIAASGLFVPKTTADALEELQSYREMKNLLIRQAGKTHT 644

[Close]

BLAST of Lag0012894 vs. NCBI nr
Match: XP_022132934.1 (autophagy-related protein 13b [Momordica charantia] >XP_022132935.1 autophagy-related protein 13b [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQ 60
           MLEPGGFFPIRKSQDAA+GALV MLQKAPPLRQDFTNS TD LR STPD PSRNIQQGNQ
Sbjct: 535 MLEPGGFFPIRKSQDAAIGALVCMLQKAPPLRQDFTNSATDHLRSSTPDFPSRNIQQGNQ 594

Query: 61  ISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKTHT 115
           ISET+++K RYA SSS+TASGL MPKTTADALEELQ+Y EMKNLLLRQAGKTHT
Sbjct: 595 ISETVSTKDRYAASSSVTASGLIMPKTTADALEELQNYREMKNLLLRQAGKTHT 648

[Close]

BLAST of Lag0012894 vs. NCBI nr
Match: KAG6604273.1 (Autophagy-related protein 13b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 8.4e-46
Identity = 99/112 (88.39%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQ 60
           MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFT+S  DL+RPSTPDSPSRN QQG Q
Sbjct: 523 MLEPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTDSAADLVRPSTPDSPSRNPQQGTQ 582

Query: 61  ISETLASKGRYAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQAGKT 113
           IS++L SKGRYA SSSIT SGLF+PKTTADALEELQSY EMKNLLLRQAGKT
Sbjct: 583 ISKSLGSKGRYAASSSITTSGLFVPKTTADALEELQSYREMKNLLLRQAGKT 634

[Close]

BLAST of Lag0012894 vs. ExPASy Swiss-Prot
Match: F4J8V5 (Autophagy-related protein 13b OS=Arabidopsis thaliana OX=3702 GN=ATG13B PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 3   EPGGFFPIRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQIS 62
           +  G +P +KSQDAAVGALVRML+KAPPLRQD + S       S P+  S N +      
Sbjct: 519 DSSGSYP-KKSQDAAVGALVRMLKKAPPLRQDVSES-------SRPEICSNNNKP----- 578

Query: 63  ETLASKGRYAVSSSITASGLFM-PKTTADALEELQSYSEMKNLLL 107
              A     AV +SITASG+ +  KTTADALEEL+SY EMKN LL
Sbjct: 579 ---AGAHEIAV-ASITASGIALASKTTADALEELRSYKEMKNHLL 606

[Close]

BLAST of Lag0012894 vs. ExPASy Swiss-Prot
Match: Q9SCK0 (Autophagy-related protein 13a OS=Arabidopsis thaliana OX=3702 GN=ATG13A PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-07
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 11  RKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLLRPSTPDSPSRNIQQGNQISETLASKGR 70
           R SQDAAVG LV ML+ APPLRQD           ST  +    +Q+   +S        
Sbjct: 519 RSSQDAAVGVLVHMLKTAPPLRQD----------SSTYMASMSGVQREGSVSG------- 578

Query: 71  YAVSSSITASGLFMPKTTADALEELQSYSEMKNLLLRQA 110
                  T S   M ++T+DALEEL++Y ++K+LLL ++
Sbjct: 579 -------TESEFSMARSTSDALEELRNYKQLKDLLLSKS 593

The following BLAST results are available for this feature:

BLAST of Lag0012894 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025544.1	3.4e-47	89.47	autophagy-related protein 13b isoform X1 [Cucumis melo var. makuwa] >TYK25704.1 ...	[more]
XP_008441017.1	3.4e-47	89.47	PREDICTED: autophagy-related protein 13b isoform X1 [Cucumis melo]	[more]
XP_004148643.1	7.6e-47	88.60	autophagy-related protein 13b [Cucumis sativus] >KAE8647466.1 hypothetical prote...	[more]
XP_022132934.1	3.8e-46	86.84	autophagy-related protein 13b [Momordica charantia] >XP_022132935.1 autophagy-re...	[more]
KAG6604273.1	8.4e-46	88.39	Autophagy-related protein 13b, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0012894 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4J8V5	2.0e-13	53.33	Autophagy-related protein 13b OS=Arabidopsis thaliana OX=3702 GN=ATG13B PE=2 SV=...	[more]
Q9SCK0	8.0e-07	38.38	Autophagy-related protein 13a OS=Arabidopsis thaliana OX=3702 GN=ATG13A PE=1 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58
None	No IPR available	PANTHER	PTHR13430:SF14	AUTOPHAGY-RELATED PROTEIN 13A	coord: 11..42 coord: 71..111
IPR040182	Autophagy-related protein 13	PANTHER	PTHR13430	UNCHARACTERIZED	coord: 11..42 coord: 71..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012894.1	Lag0012894.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
cellular_component	GO:1990316	Atg1/ULK1 kinase complex