Lag0012867 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012867
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionphotosystem I reaction center subunit N, chloroplastic
Locationchr1: 45079800 .. 45080749 (+)
RNA-Seq ExpressionLag0012867
SyntenyLag0012867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCATGAATTCCAGCGTTTTGGCCTGCAACTACGCCATTTCAGGCGCTGGATCGGCCGAGCTTAACTCCAAACTCAGCGCTGTGCCTTCTGTCGCATCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCCATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTTCCTTGGTGCTTCCCTCTTTACTGCGGCTGCGGCTGCCTCCAACTCTTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGTAGCTACTCTTTGCTAACCAGAATATTCATGAGAGTTCATACTGCATATACTTTCAAATACTCTGTTTCGATTCTCTGACTTTGCACCAAAATGTATATGAAACAAAAGATGTTATATGGTACATGTATTTTAAGCTAGAAGTATCTGTTGGGTATGTATTTTATGTTCAATGTTAAATTGAAGTTTAAAGCTGAAATGAATTTGTATCGAAGTTCAGGGACTAAGATAGAATGATTCGAAGTATAAAGATCGAAGTAAAGGGACCGAAATAGGATTGAGATGAAAAATCTACCATGTTTCTAAGCCTGTTCTTGCAACAGGAATTGAATGACAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTGAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAGCAAAAGGTTTGAACATTGTTTAAGTTGTAGTCACTTTTGGGTTTGAAATGTTGACAATATGTGATGGGTTTTTGCTGAGTACTAAGTTAGTTCTCTGTTCTGTTTTTGATGGATGCAGAAAGTTCCATTTATCTCAGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

mRNA sequence

ATGGCGACCATGAATTCCAGCGTTTTGGCCTGCAACTACGCCATTTCAGGCGCTGGATCGGCCGAGCTTAACTCCAAACTCAGCGCTGTGCCTTCTGTCGCATCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCCATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTTCCTTGGTGCTTCCCTCTTTACTGCGGCTGCGGCTGCCTCCAACTCTTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTGAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAGCAAAAGAAAGTTCCATTTATCTCAGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGCGTTTTGGCCTGCAACTACGCCATTTCAGGCGCTGGATCGGCCGAGCTTAACTCCAAACTCAGCGCTGTGCCTTCTGTCGCATCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCCATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTTCCTTGGTGCTTCCCTCTTTACTGCGGCTGCGGCTGCCTCCAACTCTTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTGAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAGCAAAAGAAAGTTCCATTTATCTCAGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEGRRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Homology
[Close]
BLAST of Lag0012867 vs. NCBI nr
Match: XP_023518442.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 4.8e-85
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAV SVASPGVSGYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLFLGASLF AAAA+SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. NCBI nr
Match: XP_023003251.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAV SVASPGVSGYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLFLGASLF AAAA+SNS+ANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLFLGASLFAAAAASSNSTANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. NCBI nr
Match: KAG6595132.1 (Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAV SVASPGVSGYKLPAIRAQQARVPE+KNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPESKNEG 60

Query: 61  RRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLFLGASLF AAAA+SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. NCBI nr
Match: XP_022963255.1 (photosystem I reaction center subunit N, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAV SVASPGVSGYKLPAIRA+QARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAKNEG 60

Query: 61  RRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLFLGASLF AAAA+SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. NCBI nr
Match: XP_038883748.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 6.9e-84
Identity = 163/171 (95.32%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+AVPSVASPGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALL+LGA+LF AAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           VEFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. ExPASy Swiss-Prot
Match: P49107 (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-57
Identity = 118/173 (68.21%), Postives = 140/173 (80.92%), Query Frame = 0 

Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVPSVASPGVSGYK-LPAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS ELN K+  V S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLFLGASLFTAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A++FL A+LF+ AA   ++SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FGSCKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]
BLAST of Lag0012867 vs. ExPASy Swiss-Prot
Match: P31093 (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.5e-45
Identity = 99/144 (68.75%), Postives = 108/144 (75.00%), Query Frame = 0 

Query: 28  SAVPSVASPGVSGYKLPAIRAQQARVPEAKNEGRRTALLFLGASLFTAAAAASNSSANAG 87
           +AVP  ASP           A   RV  A  + RR+ALL L A    AA AAS  SA A 
Sbjct: 15  AAVPQSASP-----------AAAKRVQVAPAKDRRSALLGLAAVF--AATAASAGSARAS 74

Query: 88  VIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFI 147
           V +EYLEKSK NKELNDKKR ATSGANFARAYTV+FGSCKFP NFTGCQDLAKQKKVPFI
Sbjct: 75  VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 134

Query: 148 SDDLELECEGKDKYKCGSNVFWKW 172
           +DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 135 TDDLEIECEGKEKFKCGSNVFWKW 145

[Close]
BLAST of Lag0012867 vs. ExPASy Swiss-Prot
Match: O65107 (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=PSAN PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.8e-42
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 80  SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLA 139
           +  SA A + +EYLEKSKANKELNDKKRLATSGANFARAYTVEFGSC+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]
BLAST of Lag0012867 vs. ExPASy Swiss-Prot
Match: Q9SBN5 (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067 GN=PSAN PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-24
Identity = 68/132 (51.52%), Postives = 86/132 (65.15%), Query Frame = 0 

Query: 45  AIRAQQARVPEAK-----------NEGRRTALLFLGASLFTAAAAASNSSANAGVIEEYL 104
           A+RAQ A+V  A+           +   R  LL LG  L    AAA   +ANAGV+E+ L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLL---GAAALAPAANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFISDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  G+C+FPENF GC++LA  K V +I++DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

The following BLAST results are available for this feature:
BLAST of Lag0012867 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518442.14.8e-8597.66photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita pep... [more]
XP_023003251.11.1e-8497.08photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita max... [more]
KAG6595132.11.1e-8497.08Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyr... [more]
XP_022963255.11.4e-8497.08photosystem I reaction center subunit N, chloroplastic-like isoform X1 [Cucurbit... [more]
XP_038883748.16.9e-8495.32photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa his... [more]
BLAST of Lag0012867 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P491071.1e-5768.21Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana O... [more]
P310936.5e-4568.75Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=451... [more]
O651076.8e-4285.87Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX... [more]
Q9SBN56.4e-2451.52Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008796Photosystem I reaction centre subunit N, chloroplasticPFAMPF05479PsaNcoord: 44..171
e-value: 6.7E-66
score: 220.5
IPR008796Photosystem I reaction centre subunit N, chloroplasticPANTHERPTHR36814PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTICcoord: 1..171
IPR044907Photosystem I reaction centre subunit N superfamilyGENE3D4.10.1190.10coord: 87..171
e-value: 1.3E-52
score: 178.0
NoneNo IPR availablePANTHERPTHR36814:SF1PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTICcoord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012867.1Lag0012867.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009522 photosystem I