Lag0012856 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012856
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 44990994 .. 44993589 (-)
RNA-Seq Expression	Lag0012856
Synteny	Lag0012856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGCTATTGCTCCAGCTCCAGGTCCAACTCCGATTGTCTCTAGTGACGACTCATATGTGCAAGCAATGGGAAATTTTGCCGTGAAGGAGTATCTACTCGGAGTGTTAGGTGTAAATATGTCGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTATGGTGGAGGTGTGGGAAGAACCAGTGGTTCCAAATCCTCAACCATCTAGAGAGGTATATGTGGCTGGTGTGATACATAATGCAGATGAAAAATCTTGGACATTCATCAATTGTTTTAAACCTGTGGACTTGGCACCCTATTGTCCTTAATTGTCAATGTCTAGTTTGATGAAGGAAGTTATCTTTTCTACTTTAGATGATGCCTAAGTTGCATTATCTTTATCTATCAAATATGATATGAGAATAAAGTAAAGAGTATATCTATGTTTAATCTTCTACTAAAATGAGGTTGTCTCTTTATTTTTACCCTTTACGTTCACTTGCCCAAATTTCATCACCTCATCAACAATTAATATATAATTATTATGAATCAAAGGCACATGTTTAGACAAGTTGTTTTAAGTAGTTTTAACTACAACCTTTTATGTAGGTGCTTGTATAAATTTATGCGAATATTTTTCTCAAATGTCTTATGACATATTTTCAGTAGAGTCTACATAAGATTACATATCAAGAATTATTACCTCCACACTAGCAACAATTCGAATTGTAACTCCAAAATTTAATTAACCTTAATTGCTTATGTGACTACAAGTTCGTAATTAATTGTCTAATTCCTTTCATCTAAATTTATCTTTGAGTGTCTCATATCACATTGTTTAAATGATATATAGAGATTTGAATGAAGCATGATTTAGAGCTCAAAGACGTTATTAATATTAAAACTTTTAAAGTTATGAGTTATGTAGATGCAAGCTTCACATGATTTATAATTTAACATAAAAAATCACCTATAGTTGGAAGAAAGATCTGCTCAATCACGTATCTCTTTTAATTTTTTTTTTTATACCATGTGAATATCCCATAAACTCATGAGCTGGACAAATTATTTTTTATTTTCCTGCATTTTAATTTCTAAGGCCCCGTTTGAGATCAAGTGTGTCTTTAACAAAAATGAAAACCATGGTGAGGAAATTTAAAGAAAACAAGCCTAATTTTCAAAAACCAAAAACAAAAAACCAAATGGTTATCAAACGGAGCCTAATTAATTGTTAGTGTCGATAATTTGAATTCCAAGTCTTGAAGTTGGGTGTTACACTTTTATGTCTAATAATATTCTTTGTGCTAAAAATTAAATCTTTTTGTGTGTGTCCATTCTGAGTCAATACTAATTAAAAGTAAAAAAAAAAATGAAATATATCAGGTGCAATTTGATTTTTATTCCAAACATATGAAGAATAATCCGTGCAAGCAGTGAGTGTGAAAAAAGAAGGGAGACAAGGTAAAAGTGACAAAAATTCATTTCTGATCTCCAAAATAAAAAAGAACAAAAATAACTCTATGATCAACTTGAAATTAGATTGATTGAGCATATAACACATTTACTTAAAGAAAGATTAAAGCAGTTAAGCATATATCCCTTTTCCATTTTATTTCACTCAATAACACCTAATATTTTTCCTCTCAAAATTATATGAAATCCATTTGGTTAATGAACCTAGATGGTTAATTAAGTTCCATAAAATAAACGAAATTTAACTATGTTTTTAAACTAACTACATATAGAGCCTCACATTTTCATTGTCTACCCACTATATCTCACATTGCATTTTATTTATTCTCAAACGGTAAATAGCTACTATAGTGTGGTTTCTTTTGTCGAGTTTTGCGCTTTAAAGTGGAATAATATTTTGTAAACAGAATTGACAATGTTAAGCTAATTGAAAGTTATGTTACAATGCACAAATACATGCTATAAACTACACGTTTCGAAGGATAATTTTCAACATTAAGATAACAAAATAATGCTCCTAACTAAATGAATTGGATTCGGAGCTATCTTGTAATTAGTCATGAAAATCTTATTGGCAATTTCTTTTGATGACATTCACACATAGCAAGATTCCATAATATCAAGTTCTACTGTTGAATGATTCTTCGAGTCCAAAAATTAAATTCCTTGATATCCATTTCTAGGGTTCAAGCCAACTCTAATCTATAAATTTAGAACTTCCGCTACGGATTGATTGCAAACCACCATTACAAAGTTTCCTTAGCCTTCAACTCAAACTATCAATCAAGAGTTACGATGGCTGCTATTGCTCCGCTTGCCTCCAGTGACTCCTATGTGCAAGCAATGGGAAATTTTGCAGTGAAGGAGCATCCCATAATTTTTGGGATAAATATAAGTTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATCATGCAAGGTCAAAATACAACCTTCTGGTGGAGGTGTGGGTAGAACAAGTGGTTCTAAATCCTCAACCATATAGAGATGTATATGTGGCTGGTGTGATACATAATGCAGATGAAAAATCTTGGAAAGCCGTCCATTGGTTTAAACCTATAGACTTGGCACCCTATTGTCTGTGA

mRNA sequence

ATGGCTGCTGCTATTGCTCCAGCTCCAGGTCCAACTCCGATTGTCTCTAGTGACGACTCATATGTGCAAGCAATGGGAAATTTTGCCGTGAAGGAGTATCTACTCGGAGTGTTAGGTGTAAATATGTCGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTATGGTGGAGGTGTGGGAAGAACCAGTGGTTCCAAATCCTCAACCATCTAGAGAGAACTTCCGCTACGGATTGATTGCAAACCACCATTACAAAGTTTCCTTAGCCTTCAACTCAAACTATCAATCAAGAGTTACGATGGCTGCTATTGCTCCGCTTGCCTCCAGTGACTCCTATGTGCAAGCAATGGGAAATTTTGCAGTGAAGGAGCATCCCATAATTTTTGGGATAAATATAAGTTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATCATGCAAGGTCAAAATACAACCTTCTGGTGGAGGTGTGGGTAGAACAAGTGGTTCTAAATCCTCAACCATATAGAGATGTATATGTGGCTGGTGTGATACATAATGCAGATGAAAAATCTTGGAAAGCCGTCCATTGGTTTAAACCTATAGACTTGGCACCCTATTGTCTGTGA

Coding sequence (CDS)

ATGGCTGCTGCTATTGCTCCAGCTCCAGGTCCAACTCCGATTGTCTCTAGTGACGACTCATATGTGCAAGCAATGGGAAATTTTGCCGTGAAGGAGTATCTACTCGGAGTGTTAGGTGTAAATATGTCGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTATGGTGGAGGTGTGGGAAGAACCAGTGGTTCCAAATCCTCAACCATCTAGAGAGAACTTCCGCTACGGATTGATTGCAAACCACCATTACAAAGTTTCCTTAGCCTTCAACTCAAACTATCAATCAAGAGTTACGATGGCTGCTATTGCTCCGCTTGCCTCCAGTGACTCCTATGTGCAAGCAATGGGAAATTTTGCAGTGAAGGAGCATCCCATAATTTTTGGGATAAATATAAGTTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATCATGCAAGGTCAAAATACAACCTTCTGGTGGAGGTGTGGGTAGAACAAGTGGTTCTAAATCCTCAACCATATAGAGATGTATATGTGGCTGGTGTGATACATAATGCAGATGAAAAATCTTGGAAAGCCGTCCATTGGTTTAAACCTATAGACTTGGCACCCTATTGTCTGTGA

Protein sequence

MAAAIAPAPGPTPIVSSDDSYVQAMGNFAVKEYLLGVLGVNMSFIRVVKYEILKLDNARSKYNLMVEVWEEPVVPNPQPSRENFRYGLIANHHYKVSLAFNSNYQSRVTMAAIAPLASSDSYVQAMGNFAVKEHPIIFGINISFIRVVKYEILKLDHARSKYNLLVEVWVEQVVLNPQPYRDVYVAGVIHNADEKSWKAVHWFKPIDLAPYCL

Homology

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BLAST of Lag0012856 vs. NCBI nr
Match: KAG6604292.1 (putative cysteine proteinase inhibitor 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 5.1e-04
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 15 VSSDDSYVQAMGNFAVKEYLLGVLGVNMSFIRVVKYEILKLDNARSKYNLMVEVWEEPVV 74
          V+  D YVQ +G FAV E++ G+ GV M+FIRVV  E  K+     KY+L+VEV E PV+
Sbjct: 26 VNVHDQYVQELGRFAVMEHVHGLCGVGMTFIRVVSGE-SKMVCEGKKYSLVVEVKEVPVL 85

Query: 75 PNPQPS 81
          P+  P+
Sbjct: 86 PHLCPA 90

The following BLAST results are available for this feature:

BLAST of Lag0012856 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604292.1	5.1e-04	48.48	putative cysteine proteinase inhibitor 7, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0012856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012856 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 106..206 e-value: 7.5E-6 score: 28.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012856.1	Lag0012856.1	mRNA