Lag0012849 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012849
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr1: 44952902 .. 44954985 (-)
RNA-Seq Expression	Lag0012849
Synteny	Lag0012849

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAACCGATATCACATCCGAATGAGAGAGATCTTGAGGACATGAAAACAATGAACATAAAGCTTAAAAGAATTGATAAGCCTATACCAACAAGGTGCACCTTCCTTTTCGATGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGTTTAGCTTGGAGAAGCTCTATGTTAGGTGACCTCCTAGGAATTTTTCAAGAAAGGATGTGAGTGAGGACAAAGCATGCTAAAAAGACCCCGTGTTGGTTTGTGGGGTCAGTCTTCAATCTTAAAAGTAGTTTCAGACATGTATGGTGACGTCGCCAGGTCGCAGGGAATATAGGAGAATGTCGGGGTCGTCAGGTGCCAAATTCGAATTCCAAATCCTAGGTCTGTTACAATTATATAGCTCAAATTTTGTTAGTCTCGATCATGTCACCATTAGTTTGTAATTTGTCTAATTAGCTTAAAATCACATCACCTCATCTAAATTTATTTTAAAAGAGTGTTATGAGAGATATATTTAAGTGGTACATAATTAAAGACTAAAATTAATCATAATTTAAAGCTAAGGGATAGAATTGAAATTTTTTTAAATTATGAAACTACCTAGTTTTTACAAATATACAAATGCTCAAAGTATAAAGATACAAACTTACAAAAAAAAAAAAAAAAAAAATGAAACTCCTACTCTATCGATGTTAGTTCTGGTTCGGTTACTTGGTTGCAGTTCAAGGAGGCGTTCTTCCAGAAATATTACTCGGTCATTATCAGTTATAGAAAGGAGAAGGAGTTCCTAATCTTGTCGCAAGGGGAAAAGTCAGTAGAAGAGTACGAACTGGAGTTCACCCGACTGTCCCGATTCGCTCCTGAAGCGGTGGACACGGAGGTGAAGAAGACAAAGAGGTTCATTGTGGGCCTCAGAGATGACGTGCAGAGGGTGGTTGGAGCCCTTGGCCTAGCGAACTACGCATCGGCCCTTCGAGCGACCACCTTTATGGGCATGCCAACTGTTAATGCAACTCCAGTAGCCAAGGAGTCAGAGCCCAACGTAGGACAGAAGAGGAAACATGAGCAGACAACTACCAACCTCCAGCGATCTCAACCTTCATCCGAAAGTTCTAGACAAAAAACTCATCATGACAAACAGGAGGGCAATGGAGGTGAAAAACCAAAGTGCAACTCTTGTGGAAGACATCATTGGAGTCAGTGCATGGCGAGGAAAGGTGTGTGTTTCAAATGTCACCAGGAAGGGCGTATGGCTAATAACTGCCCTCAGAAGAAAACATGAGGCTCGTGAAGAAAGACCTTGCAAGGTATTTTTACACAACAACTAAATCAACAAACAAATATTTAATTAATAAAATATAATAGTGTATATACATGAAACTTTCCGTCCATCCACAAATCATATCCATGATCTAATTTACAAAGAAAAAGTAAATTTGCTAAACAAAATAAGTACACAAGTCTAAAATATTTCATCTTTGAACTAAATACCAATCAAGTGAACTGGAGGGATGGTGAAAGACATGTTTGCTATAGCTACCTCCTTAAGCCTCTTGTGTCATAGGTTAACTCTCCCAAATACATTGACACTACAACAAATTCTACCTTTAATGTCGATCAGAAAAAAAAAGCACGCGTACACAATGTCGGGCAGTGAAAATTTGTGCGGAAAAAAACAAGAAAAAATAAACATGACCGACATTAAAGGTAAACCCAAATAAAACCATTTTCAAGTTACTTTTTCTCTCCTGAAATTTTAGGTCTCTTCCTCTCTCTCCTCGAAAATGCCTCCAGCGCCGCCTCTCCCCTCTTTGCTCTCGCAACGACTGCGAATCCTCCCTCACGGCAGCAAGTAGGTCGTATCGTGGAAGTTCGCCTCCCTAAGAAACCTTCTGGTTTGAATGTTTCTGTTTCTTCTCTTGATTGTCTTGGTTTGCATTTAGGTATGTGCTTCGATTTTCATCTTCCATTTCTCCTCTTAACGTTCAATTTCTCAGCTCTAGATTTTCAATCTCTTCAGCTTTTACTTCGATTTGCTTGTTTCTTTTCAGTTTCTACTCTTGGTTGTCTCTGTGCTCGTGGAGATCCCCTGTAA

mRNA sequence

ATGAATGAACCGATATCACATCCGAATGAGAGAGATCTTGAGGACATGAAAACAATGAACATAAAGCTTAAAAGAATTGATAAGCCTATACCAACAAGGTGCACCTTCCTTTTCGATGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGTTTAGCTTGGAGAAGCTCTATTTCAAGGAGGCGTTCTTCCAGAAATATTACTCGGTCATTATCAGTTATAGAAAGGAGAAGGAGTTCCTAATCTTGTCGCAAGGGGAAAAGTCAGTAGAAGAGTACGAACTGGAGTTCACCCGACTGTCCCGATTCGCTCCTGAAGCGGTGGACACGGAGGTGAAGAAGACAAAGAGGTTCATTGTGGGCCTCAGAGATGACGTGCAGAGGGTGGTTGGAGCCCTTGGCCTAGCGAACTACGCATCGGCCCTTCGAGCGACCACCTTTATGGGCATGCCAACTGTTAATGCAACTCCAGTAGCCAAGGAGTCAGAGCCCAACGTAGGACAGAAGAGGAAACATGAGCAGACAACTACCAACCTCCAGCGATCTCAACCTTCATCCGAAAGTTCTAGACAAAAAACTCATCATGACAAACAGGAGGGCAATGGAGGTGAAAAACCAAAGTGCAACTCTTGTGGAAGACATCATTGGAGTCAGTGCATGGCGAGGAAAGGTCTCTTCCTCTCTCTCCTCGAAAATGCCTCCAGCGCCGCCTCTCCCCTCTTTGCTCTCGCAACGACTGCGAATCCTCCCTCACGGCAGCAAGTAGGTCGTATCGTGGAAGTTCGCCTCCCTAAGAAACCTTCTGGTTTGAATGTTTCTGTTTCTTCTCTTGATTGTCTTGGTTTGCATTTAGTTTCTACTCTTGGTTGTCTCTGTGCTCGTGGAGATCCCCTGTAA

Coding sequence (CDS)

ATGAATGAACCGATATCACATCCGAATGAGAGAGATCTTGAGGACATGAAAACAATGAACATAAAGCTTAAAAGAATTGATAAGCCTATACCAACAAGGTGCACCTTCCTTTTCGATGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGTTTAGCTTGGAGAAGCTCTATTTCAAGGAGGCGTTCTTCCAGAAATATTACTCGGTCATTATCAGTTATAGAAAGGAGAAGGAGTTCCTAATCTTGTCGCAAGGGGAAAAGTCAGTAGAAGAGTACGAACTGGAGTTCACCCGACTGTCCCGATTCGCTCCTGAAGCGGTGGACACGGAGGTGAAGAAGACAAAGAGGTTCATTGTGGGCCTCAGAGATGACGTGCAGAGGGTGGTTGGAGCCCTTGGCCTAGCGAACTACGCATCGGCCCTTCGAGCGACCACCTTTATGGGCATGCCAACTGTTAATGCAACTCCAGTAGCCAAGGAGTCAGAGCCCAACGTAGGACAGAAGAGGAAACATGAGCAGACAACTACCAACCTCCAGCGATCTCAACCTTCATCCGAAAGTTCTAGACAAAAAACTCATCATGACAAACAGGAGGGCAATGGAGGTGAAAAACCAAAGTGCAACTCTTGTGGAAGACATCATTGGAGTCAGTGCATGGCGAGGAAAGGTCTCTTCCTCTCTCTCCTCGAAAATGCCTCCAGCGCCGCCTCTCCCCTCTTTGCTCTCGCAACGACTGCGAATCCTCCCTCACGGCAGCAAGTAGGTCGTATCGTGGAAGTTCGCCTCCCTAAGAAACCTTCTGGTTTGAATGTTTCTGTTTCTTCTCTTGATTGTCTTGGTTTGCATTTAGTTTCTACTCTTGGTTGTCTCTGTGCTCGTGGAGATCCCCTGTAA

Protein sequence

MNEPISHPNERDLEDMKTMNIKLKRIDKPIPTRCTFLFDGSIIGTLKLSVFSLEKLYFKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKGLFLSLLENASSAASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLGLHLVSTLGCLCARGDPL

Homology

[Close]

BLAST of Lag0012849 vs. NCBI nr
Match: XP_038880159.1 (uncharacterized protein LOC120071839 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-24
Identity = 73/168 (43.45%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F++KY+S  + Y K+ EF+ L QG  +VEEYE +FTRLS FAP+ V TE K+ +RF
Sbjct: 43  FKEQFYEKYFSAHVRYNKQAEFMNLKQGTMTVEEYEEKFTRLSCFAPDLVSTEAKRAERF 102

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           + GLRD+V+ +V AL   NYA+A RA   +G P+      +   EP  GQKRK EQ    
Sbjct: 103 VQGLRDEVRGIVQALEPPNYATAFRAAARVGYPSGIEFSKSLTEEPASGQKRKVEQKALG 162

Query: 178 LQRSQPSSESSR--QKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKG 224
             +   S++ S+   + H     G   E+P C SCG+HHW  C+   G
Sbjct: 163 PSQKVQSTDRSQGHAQRHATASGGVWRERPVCKSCGKHHWGYCLIGTG 210

[Close]

BLAST of Lag0012849 vs. NCBI nr
Match: XP_038891712.1 (uncharacterized protein LOC120081110 [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-20
Identity = 67/171 (39.18%), Postives = 94/171 (54.97%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F+ KY+S  + Y K++EFL L QG +SVEEY+ EF  LSRFAPE V TE  + +RF
Sbjct: 125 FKERFYAKYFSANLRYNKQREFLELRQGHRSVEEYDQEFDALSRFAPELVATEAMRAERF 184

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           I GL++ ++ +V A     +  ALR    +   + +   +   + P+ GQKRK +Q    
Sbjct: 185 IQGLKESIRGIVQAFKPTTHVEALRLAAEVDPQSGDEFSLVFGAGPSSGQKRKADQKDFK 244

Query: 178 LQRSQPSSESSRQKTHHDKQEGNGGE----KPKCNSCGRHHWSQCMARKGL 225
               Q    S R   H  +Q    G     +P C+SCGR HW QC+A  G+
Sbjct: 245 PHPHQKVQGSDRSLRHFRQQAAETGAVERMRPVCSSCGRRHWGQCLAGTGV 295

[Close]

BLAST of Lag0012849 vs. NCBI nr
Match: XP_023537968.1 (uncharacterized protein LOC111798850 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-19
Identity = 70/176 (39.77%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKEAF+++YYS     +K++EF  L+Q  +SV  Y  +F RL RFA E VDTE+KK +RF
Sbjct: 171 FKEAFWEEYYSEEARLQKQQEFTQLTQNGRSVGTYGKDFIRLMRFALELVDTEIKKVQRF 230

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           I GL ++++ +VGA+    Y  ALR+ T +   +V          P VGQKR ++Q    
Sbjct: 231 IFGLDEEIRCIVGAIAPTTYDDALRSATALEGDSVEELWRPIVLTPVVGQKRHYDQVA-- 290

Query: 178 LQRSQPSSESSRQKTHHDK----------QEGNGGEKPKCNSCGRHHWSQCMARKG 224
            Q  QP  +  +Q   + K          Q G G  KP C  CG++HW QC+AR G
Sbjct: 291 -QHHQPLIQPQQQVGRYHKKPKRGQQPGRQRGRGDYKPLCCECGKNHWGQCLARSG 343

[Close]

BLAST of Lag0012849 vs. NCBI nr
Match: XP_038882311.1 (uncharacterized protein LOC120073551 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-17
Identity = 75/202 (37.13%), Postives = 102/202 (50.50%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F++KY+S    Y K+ EFL   QG  SVEEYE +F +LS FAP+ V TE  +T  F
Sbjct: 88  FKECFYEKYFSANTWYNKQAEFLNFKQGVMSVEEYEQDFDKLSHFAPKLVATETIRTNSF 147

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESE--PNVGQKRKHEQTT 177
           I GL+  ++ +V AL L  YA+AL A   +   +       +      + GQKRK  Q T
Sbjct: 148 IQGLKSRLRGMVHALELKTYAAALWAAVRIDADSQLGEDYRRSLRIGTSAGQKRKAYQKT 207

Query: 178 TNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA 237
           +  Q+ +P +                 EKP CNSC +HHW +C+AR G+     +    A
Sbjct: 208 SESQQKKPVTIKE--------------EKPICNSCRKHHWGRCLARVGVCYRYGQKGHMA 267

Query: 238 -ASPLFALATTANPPSRQ-QVG 256
              P  +     N PS Q QVG
Sbjct: 268 YECPNRSTTNDRNQPSGQDQVG 275

[Close]

BLAST of Lag0012849 vs. NCBI nr
Match: XP_023546459.1 (uncharacterized protein LOC111805576 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-17
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FK AF ++YY   +  RK++EF  LSQ  +SV  Y  EF++L RFAPE V+T+ +  +RF
Sbjct: 159 FKSAFTEEYYLEDVQLRKQQEFTQLSQRGRSVTTYVREFSKLKRFAPELVNTDYRTARRF 218

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFM-GMPTVNATPVAKESEPNVGQKRKHEQTTT 177
           ++GL   + + V A+ LA YA ALRA   M G+ + + TP       +VGQKR+H     
Sbjct: 219 VLGLDTKICKTVEAIALATYAVALRAAKSMEGLDSSHETP-----SSSVGQKRRH----- 278

Query: 178 NLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCM 220
                           H ++ +G    KPKCN CG++HW +C+
Sbjct: 279 ---------------AHENELDG----KPKCNKCGKNHWGKCL 292

[Close]

BLAST of Lag0012849 vs. ExPASy TrEMBL
Match: A0A5A7UJ81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00550 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 78/226 (34.51%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE+F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F
Sbjct: 176 FKESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKF 235

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHE-QTTT 177
           + GLR D+Q +V AL  A +A ALR    + +P    +  A      +GQKRK E Q   
Sbjct: 236 VRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGSTLGQKRKVETQLDV 295

Query: 178 NLQRSQPSSESSRQKTHHDKQEGNG-GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA 237
             QR+  S    ++        G   GE P C +CGR H  +C+A  G+     +   +A
Sbjct: 296 APQRTLRSGGVFQRHRRELAAAGRTLGELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTA 355

Query: 238 -ASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG 281
              P     TT   PS  Q GR+      +      V   +L  LG
Sbjct: 356 DVCPRKPFETTPPQPSAAQQGRVFATTRQEAERAGTVVTGTLPILG 401

[Close]

BLAST of Lag0012849 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-17
Identity = 77/228 (33.77%), Postives = 111/228 (48.68%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           F+E+F+ K++S  + + K +EFL L QG+ SVE+Y+ EF  LSRFAP+ V  E  +T+RF
Sbjct: 193 FRESFYAKFFSANVKHAKLQEFLNLEQGKLSVEQYDAEFDLLSRFAPDVVRDEAARTERF 252

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           + GLR D+Q  V AL    +A ALR    + +           +    GQKRK E     
Sbjct: 253 VNGLRLDLQGFVRALRPTTHADALRIALDLSLHERAGQSKVVGTGSASGQKRKAEAQPDV 312

Query: 178 LQRSQPSSESSRQKTHHDKQEGNGG----EKPKCNSCGRHHWSQCMARKGLFLSLLENAS 237
           + +  P S    Q+  H ++    G    E P C +CG+ H  QC+A  G+     +   
Sbjct: 313 IPQRTPRSGGVFQR--HRRELAAAGRTLRELPTCTTCGKVHGGQCLAGSGVCFRCRQPGH 372

Query: 238 SA-ASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG 281
           +A A P   L TT   PS  Q GR+      +      V   +L  LG
Sbjct: 373 TADACPRKPLETTPRQPSAPQQGRVFATNRQEAERASTVVTGTLPILG 418

[Close]

BLAST of Lag0012849 vs. ExPASy TrEMBL
Match: A0A5D3E340 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00220 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-17
Identity = 79/234 (33.76%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F
Sbjct: 14  FKENFYAKFFSANVKHAKLQEFLNLEQGDLTVEQYDAEFDMLSRFAPKVVRDEATRTEKF 73

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           + GLR D+Q +V AL  A +A+ALR    + +        A     ++GQKRK E     
Sbjct: 74  VRGLRLDLQGIVRALRPATHANALRIALDLSLQKRVDPSKAAGRGSSLGQKRKAE----- 133

Query: 178 LQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLS 237
              SQP+    R        + H  K    G    E P C  CGR H   C+   G+   
Sbjct: 134 ---SQPALAPQRDLRTRGVFQWHRQKLAAAGRTLRELPPCGRCGRVHGGHCLLESGVCFR 193

Query: 238 LLENASSA-ASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG 281
             ++  +A A P     TT + PS  Q GR+      K      V   +L  LG
Sbjct: 194 CRQSGHTADACPRKPFETTPHQPSASQQGRVFATTRHKAERAGTVVTGTLPILG 239

[Close]

BLAST of Lag0012849 vs. ExPASy TrEMBL
Match: A0A5D3E628 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003330 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-17
Identity = 79/234 (33.76%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F
Sbjct: 14  FKENFYAKFFSANVKHAKLQEFLNLEQGDLTVEQYDAEFDMLSRFAPKVVRDEATRTEKF 73

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           + GLR D+Q +V AL  A +A+ALR    + +        A     ++GQKRK E     
Sbjct: 74  VRGLRLDLQGIVRALRPATHANALRIALDLSLQKRVDPSKAAGRGSSLGQKRKAE----- 133

Query: 178 LQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLS 237
              SQP+    R        + H  K    G    E P C  CGR H   C+   G+   
Sbjct: 134 ---SQPALAPQRDLRTRGVFQWHRQKLAAAGRTLRELPPCGRCGRVHGGHCLLESGVCFR 193

Query: 238 LLENASSA-ASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG 281
             ++  +A A P     TT + PS  Q GR+      K      V   +L  LG
Sbjct: 194 CRQSGHTADACPRKPFETTPHQPSASQQGRVFATTRHKAERAGTVVTGTLPILG 239

[Close]

BLAST of Lag0012849 vs. ExPASy TrEMBL
Match: A0A5A7TG66 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00050 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-17
Identity = 75/227 (33.04%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 58  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRF 117
           FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F
Sbjct: 176 FKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKF 235

Query: 118 IVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTN 177
           + GLR D+Q +V AL  A +A ALR    + +P  + +  A      +GQKRK E T  +
Sbjct: 236 VRGLRLDLQGIVRALRPATHADALRIALDLSLPERDDSSKAAGRGSALGQKRKVE-TQPD 295

Query: 178 LQRSQPSSESSRQKTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASS 237
           +   +        + H  +   +G    E P C +CGR H  +C+A  G+     ++  +
Sbjct: 296 VVPQRTLRSGGVFQRHRRELAASGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQSGHT 355

Query: 238 A-ASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG 281
           A   P     TT   PS  Q GR+      +      V   +L  LG
Sbjct: 356 ADVCPRKPFETTPPQPSASQQGRVYATTRQEAERAGTVVTGTLPILG 401

The following BLAST results are available for this feature:

BLAST of Lag0012849 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880159.1	1.6e-24	43.45	uncharacterized protein LOC120071839 [Benincasa hispida]	[more]
XP_038891712.1	7.1e-20	39.18	uncharacterized protein LOC120081110 [Benincasa hispida]	[more]
XP_023537968.1	2.1e-19	39.77	uncharacterized protein LOC111798850 [Cucurbita pepo subsp. pepo]	[more]
XP_038882311.1	2.5e-17	37.13	uncharacterized protein LOC120073551 [Benincasa hispida]	[more]
XP_023546459.1	4.3e-17	38.04	uncharacterized protein LOC111805576 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0012849 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012849 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ81	2.7e-17	34.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7TP01	8.0e-17	33.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5D3E340	8.0e-17	33.76	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E628	8.0e-17	33.76	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TG66	8.0e-17	33.04	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Lag0012849 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 58..123 e-value: 5.1E-8 score: 33.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..206
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 53..226
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 53..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012849.1	Lag0012849.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity