Lag0012764 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012764
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCytochrome b-c1 complex subunit 9-like
Locationchr1: 44150983 .. 44153062 (+)
RNA-Seq ExpressionLag0012764
SyntenyLag0012764
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTGCAGCTCGTAGGAGCGGAGGAGGCCTTTTTGAAGGGCTTTACAGAGTTATTATGCGCCGGAACTCCGTCTATGTCACCTTCATTATCGCCGGCGCTTTTGTTGGAGAGCGGGTGAGGACCATAACTCATCTTTATATTCTGCATCCAATCCATTTCTGTTGTTCCTTTGGTTCGTTTCAAAATCAGAAGAATGATGCAATTTCGACGGGCTATAGATCGTTGTGTTGAATTAATTGATTTTTTTGGCATTAGCGGAAGTGGGATGTAGATGTAGGAGCCATTGCTTTGTAGAAAAGTTTGGAGCTTGAATAGAACTGGATTTATTATGTTTCTTCGTCGTGTTTATATGATATGATTCCTCTACTGCAGAGAAAGGGGAAAAAATGAGAACTGAGATTTGACATTTTGGTCACAAGTCGCATCCGGGGAATTCTGTAGTTCATTTTGTGATTGTGTAGAGATACATGGACTTGAAAATTGAATGTGCTATATTTTTTTAGTTCAACAATTGTGGAGGTGGAAGAATGCACTATCAACCTTTAAGATGGTATTTGGTACTTGTCCATTGAACTATACTCGGGTTGACAATTGAATGTCCTATATGGAACTTTAATGATCTAATGATATCATCTTTTATTTTCGCCTTGATTCGTACTTTGTACCCACCAGATGAGTTGCCTAAAGTTTTAAGGTGAGGGGTTGAAGTATTTCTTCCAAAAGTTTGGAATTTCATCGCTGTTCCAAGTTATTATTTTGTACCATTTTCCGGAATATGCATTCTATTATTTGCTACAAAATGACTATTGGTTTTTGTTTAGTTACTTTTTGTAATTGATGATTTATTTAGATTTTGTGGGTTTGTATAAAGAGCATCATCCAACTTCTTACCATAGATCCAAAATTTGATGAGTCTTCCTATCTCTATCAACATGTAACAAGACGAAAATGATACAGTATGAAAAAATCTTTAAAATGAGTGACTCAATCTAACTCAAACTGCATCAGCTTTGAGTCGGACTGTATTGTCATGTCTATTGTCTCATGTGTATCACTATCAACTATGGGATGACTCAAATTTTATCATGTTGCTATCCCAAATAAGATACTGAGCAGATCTACCCTTTGTGTTCTTGTTCAACCATTTACTATATCTAAACTTAACTAATTGAGGAGTGAGGGTAGTATGTCCTTTCTTATTGGTTAATGGGTATCTTAGTGCTAAGCTGTAACTTTTGATTAAATATTATGATAGAATCTTAATCTACATATTTCTATAGCTTTTTAAGAATTTATTAAATCTTCTATTTATCATTTTTTGTGTATCGAATGGAATTCATGTTTTTCTTATACTCATCGTAGTCAATAGTTGATACTGCAACTTTGGACCATGCTTCTTAGTCAATTTGGTTCTCCTGATGCAGGCCGTTGATTATGGCGTTCACAAGCTCTGGGAATACAACAACGTTGGGGTATGAGATACTGACACACTATCTTTTATTTTGCTTTTCTTCATTTAGAAGAAATTGTTTAGATTGTTCGAAGGTCAGCACTCATCATTTTTTTATTAGGCTGTGATTTCTCTATTGCTATATAAACAAACCTCCTAGCTTAGTAGCTCTGTCAAACTTTGGACGTTGGATCTGCATTTATTTGAGATTTAGCTAGTAGAAATTGAGGCTTCTGTGAATCTGTGCAACTATAGAAGATCTGAAGTTCACATCACTTTCTCATTTCATGAGGGATTTCCTGGTAAGCTTTAGAATTAATTCGTCCATCAGTGTGTGATTAGTTAGAATGATATGATTAGGCTTCAGTTTTGTTCCGTCCATCAGTCTCCTCGACCCTATCCAAATATCCAATGCTTCCCGAGGTGTTCATTGGTATACAAAATATTGAACATTGTAGAGCTCCCTAGGTGTAAAGTTGAACTTTAAGCTTGCACGGCAGAACCTTTTACTATCAGATTTGGTTGTTTCTGGACATCTGTTTTGAATTTTGATTGTGTTACCACCTTCTGCAGAAACGGTATGAGGATATTTCAGTTTTGGGGCAGAGACAATCAGAAGAATGA

mRNA sequence

ATGGATTCTGCAGCTCGTAGGAGCGGAGGAGGCCTTTTTGAAGGGCTTTACAGAGTTATTATGCGCCGGAACTCCGTCTATGTCACCTTCATTATCGCCGGCGCTTTTGTTGGAGAGCGGGCCGTTGATTATGGCGTTCACAAGCTCTGGGAATACAACAACGTTGGGAAACGGTATGAGGATATTTCAGTTTTGGGGCAGAGACAATCAGAAGAATGA

Coding sequence (CDS)

ATGGATTCTGCAGCTCGTAGGAGCGGAGGAGGCCTTTTTGAAGGGCTTTACAGAGTTATTATGCGCCGGAACTCCGTCTATGTCACCTTCATTATCGCCGGCGCTTTTGTTGGAGAGCGGGCCGTTGATTATGGCGTTCACAAGCTCTGGGAATACAACAACGTTGGGAAACGGTATGAGGATATTTCAGTTTTGGGGCAGAGACAATCAGAAGAATGA

Protein sequence

MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYEDISVLGQRQSEE
Homology
[Close]
BLAST of Lag0012764 vs. NCBI nr
Match: KAB2631534.1 (cytochrome b-c1 complex subunit 9-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          MDSAARRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFIGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLG RQSEE
Sbjct: 61 DISVLGTRQSEE 72

[Close]
BLAST of Lag0012764 vs. NCBI nr
Match: XP_022972621.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita maxima] >XP_023518855.1 cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo] >KAG6595181.1 Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027197.1 hypothetical protein SDJN02_11208 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-31
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLGQR SEE
Sbjct: 61 DISVLGQRPSEE 72

[Close]
BLAST of Lag0012764 vs. NCBI nr
Match: XP_009336941.1 (PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X2 [Pyrus x bretschneideri] >XP_009366673.1 PREDICTED: cytochrome b-c1 complex subunit 9-like [Pyrus x bretschneideri] >XP_009374719.1 PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X2 [Pyrus x bretschneideri] >XP_028946075.1 cytochrome b-c1 complex subunit 9-like [Malus domestica] >KAB2607794.1 cytochrome b-c1 complex subunit 9-like [Pyrus ussuriensis x Pyrus communis] >TQD83341.1 hypothetical protein C1H46_031128 [Malus baccata])

HSP 1 Score: 143.7 bits (361), Expect = 6.3e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          MDSAARRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLG RQSEE
Sbjct: 61 DISVLGTRQSEE 72

[Close]
BLAST of Lag0012764 vs. NCBI nr
Match: XP_015898756.1 (cytochrome b-c1 complex subunit 9 [Ziziphus jujuba])

HSP 1 Score: 143.7 bits (361), Expect = 6.3e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHK+WEYNNVGKRYE
Sbjct: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKIWEYNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DI VLGQRQSEE
Sbjct: 61 DIPVLGQRQSEE 72

[Close]
BLAST of Lag0012764 vs. NCBI nr
Match: XP_038881020.1 (cytochrome b-c1 complex subunit 9-like isoform X3 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          MDSAARRSGGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1  MDSAARRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLGQR SEE
Sbjct: 61 DISVLGQRPSEE 72

[Close]
BLAST of Lag0012764 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-27
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          M+ AARR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVGKRYE
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLGQR  EE
Sbjct: 61 DISVLGQRPVEE 72

[Close]
BLAST of Lag0012764 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-25
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1  MDSAARRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYE 60
          M+SAARRSGGG+ EG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVGKRYE
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYE 60

Query: 61 DISVLGQRQSEE 73
          DISVLGQR  +E
Sbjct: 61 DISVLGQRPVDE 72

[Close]
BLAST of Lag0012764 vs. ExPASy Swiss-Prot
Match: Q7SGT7 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=qcr9 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-04
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 16 LYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYEDI 63
          LY +I R N+ +V  + AGAF  E A D G+ K+W+  N G++++DI
Sbjct: 4  LYNLIFRNNTAFVGAVFAGAFAFELAYDNGMDKVWDKINKGRQWKDI 50

[Close]
BLAST of Lag0012764 vs. ExPASy Swiss-Prot
Match: Q6CJX2 (Cytochrome b-c1 complex subunit 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=QCR9 PE=3 SV=3)

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-04
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 16 LYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRYEDI 63
          LY+ + +RNSV+V  + A AFV + A D GV   +E +N GK ++DI
Sbjct: 7  LYKTVFKRNSVFVGTVFASAFVFQAAFDTGVTSWYENHNKGKLWKDI 53

The following BLAST results are available for this feature:
BLAST of Lag0012764 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB2631534.13.7e-3195.83cytochrome b-c1 complex subunit 9-like [Pyrus ussuriensis x Pyrus communis][more]
XP_022972621.14.8e-3197.22cytochrome b-c1 complex subunit 9-like [Cucurbita maxima] >XP_023518855.1 cytoch... [more]
XP_009336941.16.3e-3195.83PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X2 [Pyrus x bretschnei... [more]
XP_015898756.16.3e-3195.83cytochrome b-c1 complex subunit 9 [Ziziphus jujuba][more]
XP_038881020.11.1e-3097.22cytochrome b-c1 complex subunit 9-like isoform X3 [Benincasa hispida][more]
BLAST of Lag0012764 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXJ27.5e-2781.94Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
P462701.4e-2576.39Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
Q7SGT72.4e-0442.55Cytochrome b-c1 complex subunit 9, mitochondrial OS=Neurospora crassa (strain AT... [more]
Q6CJX25.2e-0444.68Cytochrome b-c1 complex subunit 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CB... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 15..63
e-value: 2.7E-22
score: 78.4
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 1..72
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyGENE3D1.20.5.260coord: 10..64
e-value: 3.0E-25
score: 89.7
IPR036656Cytochrome b-c1 complex subunit 9 superfamilySUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 12..62
NoneNo IPR availablePANTHERPTHR12980:SF4CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKEcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012764.1Lag0012764.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III