Lag0012717 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012717
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Late embryogenesis abundant protein ECP63
Location	chr1: 43652657 .. 43654349 (+)
RNA-Seq Expression	Lag0012717
Synteny	Lag0012717

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATCGTTACCAGTCAGCTCCATCCCATCAGTGGCAGTCCACAAACAGCAGTCTCGGAATCATCAGCTAGCGATGGCTTGAGGGAAAGAAGAGACGGCGGCGGAGGGAGATGGGGTGCTGAAAAGGAAAAGGATGAGAGAAGTAAGAAGATGAATGCAGGGGATATCAAATAATATGAGATTTCATCTTAAAACCAATTAACAATGAGTAGAGTAGTCCATCTATCTTTTGAATTGAGAGGTCTCCACTAATCTTTTCAATGTGGAATCTTCAACATGCCTTTTAAGGATGGTGCCTCTTTGAATTCATCATTCTTGGATCAGATTCGATTTTTTTTTATTAGGTCGAATATCCGTTTGGGTTTCATGGACTCTGATTCCATATCGAATGACATGGGGTTCCATCTCAAAGCCAATTGGCAATGAGTGGAGTAACTCATACATCTTATAAATTGTGAGTTCTCCACTTATCAGTTGAGAATCCCGCATTGAAAAAATTAGTGGAGATCTCACAGCTAGAATGGTCAACCCCACTCATTGACAATTGGTTTTGAGATGCAACCTCATGTTATCTAATATGGTATCAAAGCCCATAAAACCCAAACGGATATTCGGTCCAAGAGAAAAAAAAATTGGGATCCCATCCAAGATCACAATCCATCCAATTCTAATTCTTTTTATTAACTTCGTTGGATAATGAAACATTCAGATACTTTTTTAACTTCTAAGAACGGAAAGGTCAAATGTTGGAATCATCCCACTCCAGACGTTTTTTAACTTTAAAAAAAAAAAGTTACATTTTTCGGTTTCAAAACATCTCAAAAAAAAAAAAAAAAATAGAAATAATGGAACTCTTATGGGTGGTAGTGTTTGTGGGTTTACTTCTAAAAAAAAATCTAATGGTTATAGTTGGGAGTACACTTAAAGTCCCACATTAACTAGATATCCATTGGTATGAAACCTTTTGCGGTAAAGTAAAAGTAAATTATGTACAAAGTGGACAATACCATACCATTGTGAATATATGTGGTTGTTCGGTTGTCCCTTAACAATTATCAATTTAGCTCAAAAAAAATTTTAAATGAATTTTTAATTTTATACGGTTAACTTTTAATAAATTCTTACTTAGAGCTATTTAATTTGTATACTTAAATTTTTAATTAGTTTAAAATTTTCAAAAAGTGAATGAATTTAAACACTATGATTCAAATGCAAGGATAGTCTTAAAGTGACGGGTCTGAATTGTTTAAGAAATTTATATACGTGTGAGAATTGATGAATAGGTTATTTTCAAATTGGAGATCTAAATGCATTGATGCAATTATAAAATTTCATAGGGATGAATCAACTTTTATCCAAATATAATATCTAACATAAATTTATACACATTTATAGAATTTTAGAGATATAGTTAGAGTTTTAATTGTTATACCACTCCCAAATTTTAGGGTATAATTTTTTATTTTTTTTTTCAACCGTTAGTCCCATTTAACTGATGGAATAACATTTTGATGGTTGAAGAGGAACGGCGGCAAGGCGGAACATAATGGCGGCATTTCCTAGCGTGACGGAAGCGAAAAGGTCAAAAATTACTCAGCCGACGGGCATCGTTGAAGAAACACGCGCCGCCAGAGAGCGTGGCGCTACCGGAACCGGAAGGAAAAACGACGACGACGTGGCGGAGGAGTAG

mRNA sequence

ATGCGTATCGTTACCAGTCAGCTCCATCCCATCAGTGGCAGTCCACAAACAGCAGTCTCGGAATCATCAGCTAGCGATGGCTTGAGGGAAAGAAGAGACGGCGGCGGAGGGAGATGGGGTGCTGAAAAGGAAAAGGATGAGAGAAGAACGGCGGCAAGGCGGAACATAATGGCGGCATTTCCTAGCGTGACGGAAGCGAAAAGGTCAAAAATTACTCAGCCGACGGGCATCGTTGAAGAAACACGCGCCGCCAGAGAGCGTGGCGCTACCGGAACCGGAAGGAAAAACGACGACGACGTGGCGGAGGAGTAG

Coding sequence (CDS)

ATGCGTATCGTTACCAGTCAGCTCCATCCCATCAGTGGCAGTCCACAAACAGCAGTCTCGGAATCATCAGCTAGCGATGGCTTGAGGGAAAGAAGAGACGGCGGCGGAGGGAGATGGGGTGCTGAAAAGGAAAAGGATGAGAGAAGAACGGCGGCAAGGCGGAACATAATGGCGGCATTTCCTAGCGTGACGGAAGCGAAAAGGTCAAAAATTACTCAGCCGACGGGCATCGTTGAAGAAACACGCGCCGCCAGAGAGCGTGGCGCTACCGGAACCGGAAGGAAAAACGACGACGACGTGGCGGAGGAGTAG

Protein sequence

MRIVTSQLHPISGSPQTAVSESSASDGLRERRDGGGGRWGAEKEKDERRTAARRNIMAAFPSVTEAKRSKITQPTGIVEETRAARERGATGTGRKNDDDVAEE

Homology

[Close]

BLAST of Lag0012717 vs. NCBI nr
Match: AST13894.1 (late embryogenisis abundant protein 9 [Betula platyphylla])

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-04
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 47  ERRTAARRNIMAAFPSVTEAKRSKITQPTGIVEETRAARERGATG 92
           +R TAA  NI ++ PSVTEA + K+TQP+ +V+ETRAARE G+TG
Sbjct: 376 DRGTAATANIFSSLPSVTEAIKRKLTQPSDVVDETRAAREHGSTG 420

[Close]

BLAST of Lag0012717 vs. NCBI nr
Match: CAA79329.1 (BP8 [Betula pendula])

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-04
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 47  ERRTAARRNIMAAFPSVTEAKRSKITQPTGIVEETRAARERGATG 92
           +R TAA  NI ++ PSVTEA + K+TQP+ +V+ETRAARE G+TG
Sbjct: 376 DRGTAATANIFSSLPSVTEAIKRKLTQPSDVVDETRAAREHGSTG 420

[Close]

BLAST of Lag0012717 vs. ExPASy Swiss-Prot
Match: Q9SKP0 (Late embryogenesis abundant protein ECP63 OS=Arabidopsis thaliana OX=3702 GN=ECP63 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 16  QTAVSESSASDGLRERRDGGGGRWGAEKEKDE---RRTAARRNIMAAFPSVTEAKRSKIT 75
           +       AS   RE  + G  +  AE+ KD    R   A+  I  A  +VTEA +SK+T
Sbjct: 324 EAGAKAQEASQKTRESTESGAQK--AEETKDSAAVRGNEAKGTIFGALGNVTEAIKSKLT 383

Query: 76  QPTGIVEETRAARERGATG 92
            P+ IVEETRAARE G TG
Sbjct: 384 MPSDIVEETRAAREHGGTG 400

The following BLAST results are available for this feature:

BLAST of Lag0012717 vs. NCBI nr


Match Name	E-value	Identity	Description
AST13894.1	9.4e-04	60.00	late embryogenisis abundant protein 9 [Betula platyphylla]	[more]
CAA79329.1	9.4e-04	60.00	BP8 [Betula pendula]	[more]

BLAST of Lag0012717 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKP0	2.0e-04	43.04	Late embryogenesis abundant protein ECP63 OS=Arabidopsis thaliana OX=3702 GN=ECP...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012717.1	Lag0012717.1	mRNA